>ref|XM_464574.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 236  tttcttgaagggatccgtttcctgtcccaacgacttgggctgtcgtttctaccgcctctg 295
            ||||||| || || || ||||||| |||||| ||||| || || ||||| |||| || ||
Sbjct: 1795 tttcttggagagaaccatttcctgacccaacaacttgagcagttgtttcgaccgtctttg 1736

                                                                        
Query: 296  ctttcagcttctgttccctctccagatcttgctttgccaggggagagaactgcgagtcaa 355
            |||||||| | |  ||| |||| || |||||||||||||| || |||||||| |||||||
Sbjct: 1735 ctttcagcattttctccttctcaagctcttgctttgccagtggggagaactgtgagtcaa 1676

                                  
Query: 356  gggaccttacggcgcccaacca 377
            |||||||||| || ||||||||
Sbjct: 1675 gggaccttacagcacccaacca 1654

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                           
Query: 236     tttcttgaagggatccgtttcctgtcccaacgacttgggctgtcgtttctaccgcctctg 295
               ||||||| || || || ||||||| |||||| ||||| || || ||||| |||| || ||
Sbjct: 6059004 tttcttggagagaaccatttcctgacccaacaacttgagcagttgtttcgaccgtctttg 6058945

                                                                           
Query: 296     ctttcagcttctgttccctctccagatcttgctttgccaggggagagaactgcgagtcaa 355
               |||||||| | |  ||| |||| || |||||||||||||| || |||||||| |||||||
Sbjct: 6058944 ctttcagcattttctccttctcaagctcttgctttgccagtggggagaactgtgagtcaa 6058885

                                     
Query: 356     gggaccttacggcgcccaacca 377
               |||||||||| || ||||||||
Sbjct: 6058884 gggaccttacagcacccaacca 6058863

>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_A02
          Length = 175153

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                         
Query: 236   tttcttgaagggatccgtttcctgtcccaacgacttgggctgtcgtttctaccgcctctg 295
             ||||||| || || || ||||||| |||||| ||||| || || ||||| |||| || ||
Sbjct: 24486 tttcttggagagaaccatttcctgacccaacaacttgagcagttgtttcgaccgtctttg 24427

                                                                         
Query: 296   ctttcagcttctgttccctctccagatcttgctttgccaggggagagaactgcgagtcaa 355
             |||||||| | |  ||| |||| || |||||||||||||| || |||||||| |||||||
Sbjct: 24426 ctttcagcattttctccttctcaagctcttgctttgccagtggggagaactgtgagtcaa 24367

                                   
Query: 356   gggaccttacggcgcccaacca 377
             |||||||||| || ||||||||
Sbjct: 24366 gggaccttacagcacccaacca 24345

>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F05
          Length = 147472

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                         
Query: 236   tttcttgaagggatccgtttcctgtcccaacgacttgggctgtcgtttctaccgcctctg 295
             ||||||| || || || ||||||| |||||| ||||| || || ||||| |||| || ||
Sbjct: 79843 tttcttggagagaaccatttcctgacccaacaacttgagcagttgtttcgaccgtctttg 79784

                                                                         
Query: 296   ctttcagcttctgttccctctccagatcttgctttgccaggggagagaactgcgagtcaa 355
             |||||||| | |  ||| |||| || |||||||||||||| || |||||||| |||||||
Sbjct: 79783 ctttcagcattttctccttctcaagctcttgctttgccagtggggagaactgtgagtcaa 79724

                                   
Query: 356   gggaccttacggcgcccaacca 377
             |||||||||| || ||||||||
Sbjct: 79723 gggaccttacagcacccaacca 79702

>gb|AY090536.1| Deschampsia antarctica unknown cold induced protein mRNA, partial
           cds; nuclear gene for plastid product
          Length = 424

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 136/165 (82%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                       
Query: 41  ctgctgcctttcccagcagctccccgtggcaggcccaaccaagcaacgtttgcttccatc 100
           |||||||||| || ||||||||||| ||||||||| ||  ||||||| |||| |||| | 
Sbjct: 276 ctgctgccttccctagcagctccccatggcaggcctaagtaagcaacatttggttccttt 217

                                                                       
Query: 101 aaaaactcgtactaactaaatttctggggatgtaaacttattgagacttcttgctagatt 160
           |||  |  ||||| || |||||||| |||| | || |||||||||||| || || |||||
Sbjct: 216 aaaggcctgtactgacaaaatttcttgggaagcaa-cttattgagactgctggccagatt 158

                                                        
Query: 161 tttcagtggtggcactttcgggttcttgcgactgtttgatgaccg 205
           |||||| ||  | ||| ||||||||||||||| ||||||||||||
Sbjct: 157 tttcagagggagtactctcgggttcttgcgacggtttgatgaccg 113



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 291 ctctgctttcagcttctgttccctctccagatc 323
           ||||| || |||| |||||||||||||||||||
Sbjct: 33  ctctgattccagcgtctgttccctctccagatc 1

>gb|BT024163.1| Zea mays clone EL01N0429C01 mRNA sequence
          Length = 1204

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 322 tcttgctttgccaggggagagaactgcgagtcaagggaccttacggcgcccaaccacgcg 381
           |||||||| ||||||| ||||||||||  ||| ||||||||||| || |||| ||| |||
Sbjct: 787 tcttgcttcgccagggaagagaactgcaggtcgagggaccttacagcacccagccatgcg 728

                                  
Query: 382 atgacaatcaccagcaatattcc 404
           | ||| |||||||| | ||||||
Sbjct: 727 aggacgatcaccaggagtattcc 705

>gb|AY107360.1| Zea mays PCO098455 mRNA sequence
          Length = 1866

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 322  tcttgctttgccaggggagagaactgcgagtcaagggaccttacggcgcccaaccacgcg 381
            |||||||| ||||||| ||||||||||  ||| ||||||||||| || |||| ||| || 
Sbjct: 1330 tcttgcttcgccagggaagagaactgcaggtcgagggaccttacagcacccagccatgca 1271

                                   
Query: 382  atgacaatcaccagcaatattcc 404
            | |||||||||||| | ||||||
Sbjct: 1270 aggacaatcaccaggagtattcc 1248

>ref|XM_387398.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07222.1)
            partial mRNA
          Length = 4839

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 136  acttattgagacttcttgctagattt 161
            |||| |||||||||||||||||||||
Sbjct: 1031 acttcttgagacttcttgctagattt 1006

>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete
             sequence
          Length = 223854

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 11    aacaggccatcttattttcctt 32
             ||||||||||||||||||||||
Sbjct: 37157 aacaggccatcttattttcctt 37136

>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete
              sequence
          Length = 218144

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 140    attgagacttcttgctagatttttc 164
              ||||||| |||||||||||||||||
Sbjct: 170235 attgagagttcttgctagatttttc 170211

>emb|AL360089.13| Human DNA sequence from clone RP11-284P20 on chromosome 9 Contains the
             3' end of a novel gene, a pescadillo homolog 1, containing
             BRCT domain (zebrafish) (PES1) pseudogene, a novel gene
             and a ribosomal protein L3 (RPL3) pseudogene, complete
             sequence
          Length = 129263

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   cctctgctttcagcttctgtt 310
             |||||||||||||||||||||
Sbjct: 70561 cctctgctttcagcttctgtt 70581

>ref|XM_226563.3| PREDICTED: Rattus norvegicus similar to TRIM9-like protein TNL
            (LOC307938), mRNA
          Length = 2874

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  ttcagcttctgttccctctcc 318
            |||||||||||||||||||||
Sbjct: 1784 ttcagcttctgttccctctcc 1764

>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 140   attgagacttcttgctagatttttc 164
             |||||||||||||| ||||||||||
Sbjct: 78474 attgagacttcttggtagatttttc 78498

>gb|AC102490.7| Mus musculus chromosome 1, clone RP24-512M8, complete sequence
          Length = 133883

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 285   taccgcctctgctttcagcttctgttcc 312
             |||||||  |||||||||||||||||||
Sbjct: 97992 taccgcccatgctttcagcttctgttcc 98019

>gb|AC138676.9| Mus musculus chromosome 3, clone RP23-381I16, complete sequence
          Length = 204781

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 289    gcctctgctttcagcttctgttcc 312
              ||||||||| ||||||||||||||
Sbjct: 153223 gcctctgctctcagcttctgttcc 153200

>ref|XM_419476.1| PREDICTED: Gallus gallus similar to dishevelled associated activator
            of morphogenesis 2; dishevelled-associated activator of
            morphogenesis 2 (LOC421422), mRNA
          Length = 3762

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  tctccagatcttgctttgcc 333
            ||||||||||||||||||||
Sbjct: 3331 tctccagatcttgctttgcc 3312

>gb|AC163215.4| Mus musculus chromosome 3, clone RP24-61G19, complete sequence
          Length = 184123

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 289   gcctctgctttcagcttctgttcc 312
             ||||||||| ||||||||||||||
Sbjct: 41102 gcctctgctctcagcttctgttcc 41079

>emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chromosome 9 Contains three
             novel genes, the 5' end of a novel gene, a novel
             pseudogene and seven CpG islands, complete sequence
          Length = 165696

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tgcctttcccagcagctccc 64
             ||||||||||||||||||||
Sbjct: 67132 tgcctttcccagcagctccc 67151

>gb|AC004106.1| Homo sapiens Xp22 BAC GSHB-45N23 (Genome Systems Human BAC library)
              complete sequence
          Length = 190482

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    taaacttattgagacttctt 152
              ||||||||||||||||||||
Sbjct: 135362 taaacttattgagacttctt 135381

>ref|XM_962688.1| PREDICTED: Tribolium castaneum similar to Protein FRA10AC1
           (LOC656139), mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  atcttattttccttgtaata 38
           ||||||||||||||||||||
Sbjct: 281 atcttattttccttgtaata 262

>gb|AC117521.2| Homo sapiens chromosome 5 clone RP11-1015H3, complete sequence
          Length = 171405

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    tggcactttcgggttcttgc 189
              ||||||||||||||||||||
Sbjct: 103822 tggcactttcgggttcttgc 103841

>gb|AC097533.2| Homo sapiens BAC clone RP11-770K15 from 4, complete sequence
          Length = 174696

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    agcttctgttccctctccag 320
              ||||||||||||||||||||
Sbjct: 125666 agcttctgttccctctccag 125647

>gb|AC010448.7| Homo sapiens chromosome 5 clone CTD-2237D2, complete sequence
          Length = 140090

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   tggcactttcgggttcttgc 189
             ||||||||||||||||||||
Sbjct: 88330 tggcactttcgggttcttgc 88311

>gb|AC125680.4| Rattus norvegicus X BAC CH230-10I21 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 139727

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  tcttgctagatttttcagtggtgg 172
            |||||||| |||||||||||||||
Sbjct: 8010 tcttgctacatttttcagtggtgg 7987

>gb|AC025731.12|AC025731 Homo sapiens BAC clone RP11-48H21 from Y, complete sequence
          Length = 91654

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    catcttattttccttgtaat 37
             ||||||||||||||||||||
Sbjct: 61661 catcttattttccttgtaat 61680

>gb|AC103916.5| Homo sapiens BAC clone RP11-614N24 from 2, complete sequence
          Length = 82711

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   taaacttattgagacttctt 152
             ||||||||||||||||||||
Sbjct: 79935 taaacttattgagacttctt 79916

>gb|AC062016.5| Homo sapiens BAC clone RP11-59P4 from 2, complete sequence
          Length = 187799

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    ttctgttccctctccagatc 323
              ||||||||||||||||||||
Sbjct: 153303 ttctgttccctctccagatc 153322

>gb|AC010283.5|AC010283 Homo sapiens chromosome 5 clone CTC-555J2, complete sequence
          Length = 157896

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    tggcactttcgggttcttgc 189
              ||||||||||||||||||||
Sbjct: 108926 tggcactttcgggttcttgc 108907

>emb|AL596139.1|CNS07EGR BAC A of library A from Tetraodon nigroviridis, T-cell receptor alpha
             delta locus (germline)
          Length = 74861

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    tttcccagcagctccccgtg 68
             ||||||||||||||||||||
Sbjct: 45579 tttcccagcagctccccgtg 45560

>gb|AC148095.5| Mus musculus chromosome 3, clone RP23-36C9, complete sequence
          Length = 194212

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 289    gcctctgctttcagcttctgttcc 312
              ||||||||| ||||||||||||||
Sbjct: 174485 gcctctgctctcagcttctgttcc 174462

>emb|BX001053.7| Mouse DNA sequence from clone RP23-199B9 on chromosome 4, complete
             sequence
          Length = 111777

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    tattttccttgtaatactct 42
             ||||||||||||||||||||
Sbjct: 86119 tattttccttgtaatactct 86100

>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete
              sequence
          Length = 189970

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     ctgcctttcccagcagctcc 63
              ||||||||||||||||||||
Sbjct: 152535 ctgcctttcccagcagctcc 152554

>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete
            sequence
          Length = 204907

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  ctggggatgtaaacttattg 143
            ||||||||||||||||||||
Sbjct: 7360 ctggggatgtaaacttattg 7341

>dbj|AP000346.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1572G7
          Length = 151600

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tgcctttcccagcagctccc 64
             ||||||||||||||||||||
Sbjct: 40167 tgcctttcccagcagctccc 40148

>dbj|AP000345.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB208E9
          Length = 113255

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tgcctttcccagcagctccc 64
             ||||||||||||||||||||
Sbjct: 77582 tgcctttcccagcagctccc 77563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,599,215
Number of Sequences: 3902068
Number of extensions: 3599215
Number of successful extensions: 98991
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98916
Number of HSP's gapped (non-prelim): 74
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)