ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63m11 |
|---|---|
| Clone Library Name | barley_pub |
>KU86_MOUSE (P27641) ATP-dependent DNA helicase 2 subunit 2 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 80 kDa subunit) (Ku autoantigen protein p86 homolog) (Ku80) (CTC box-binding factor 85 kDa subunit) (CTCBF) (CTC85) (Nuclear factor IV) (DNA-repair pro Length = 731 Score = 61.2 bits (147), Expect = 2e-09 Identities = 34/130 (26%), Positives = 73/130 (56%) Frame = -3 Query: 610 KIGDVNPVKDFEAMLAERSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRK 431 K+G VNPV++F ++ ++ +S ++A ++ + ++ + + Y+ K+++C A R+ Sbjct: 588 KVGSVNPVENFRFLVRQKIAS--FEEASLQLISHIEQFLDTN-ETLYFMKSMDCIKAFRE 644 Query: 430 ACIIEQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARS 251 I E + +N F+ L E++ ++ + F++++ V LI K+EAP S +T E A+ Sbjct: 645 EAIQFSEEQRFNSFLEALREKV-EIKQLNHFWEIVVQDGVTLITKDEAPGSSITAEEAKK 703 Query: 250 FFLKTEISSE 221 F + + E Sbjct: 704 FLAPKDKAKE 713
>KU86_HUMAN (P13010) ATP-dependent DNA helicase 2 subunit 2 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 80 kDa subunit) (Lupus Ku autoantigen protein p86) (Ku86) (Ku80) (86 kDa subunit of Ku antigen) (Thyroid-lupus autoantigen) (TLAA) (CTC box-binding fac Length = 731 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/120 (25%), Positives = 67/120 (55%) Frame = -3 Query: 607 IGDVNPVKDFEAMLAERSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKA 428 +G VNP ++F ++ ++ +S ++A ++ + ++ + + Y+ K+++C A R+ Sbjct: 588 VGSVNPAENFRVLVKQKKAS--FEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREE 644 Query: 427 CIIEQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSF 248 I E + +N F+ L E++ ++ + F++++ + LI KEEA S VT E A+ F Sbjct: 645 AIKFSEEQRFNNFLKALQEKV-EIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKF 703
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 33.9 bits (76), Expect = 0.38 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%) Frame = -3 Query: 535 KAMEEMKKYTTA-----LIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTKLYE 371 KA EE K +T L+ ++PQ EK +E F + C+ Q EE Q KL E Sbjct: 392 KAYEEQKAFTNENDQAKLMISNPQ----EKEIERFQEILN-CLF-QNREEIRQEYLKL-E 444 Query: 370 RLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSFFLKTEIS 227 L K +++ F+Q K + ++C E+ + + R LKT S Sbjct: 445 MLLKENELKSFYQQQCHKQIEMMCSEDKVEKATGKRDHRLAMLKTRRS 492
>CCNF_MOUSE (P51944) G2/mitotic-specific cyclin-F| Length = 776 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 9/75 (12%) Frame = -3 Query: 478 GDYYEKALECFVALRKACIIEQEPEEYNQ---------FVTKLYERLKKVDDVVKFFQLL 326 G Y + C ++L K C + P++Y Q F K YE + + ++V+ + L Sbjct: 479 GFSYSDLVPCVLSLHKKCFHDDAPKDYRQISLTAVKQRFEDKCYEEISQ-EEVLSYADLC 537 Query: 325 SSKNVLLICKEEAPD 281 S+ V K+E+P+ Sbjct: 538 SAIGV----KQESPE 548
>SACB5_NEIMA (Q84D00) Capsular polysaccharide phosphotransferase sacB (EC| 2.7.-.-) (Stealth protein sacB) Length = 545 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/112 (23%), Positives = 52/112 (46%) Frame = -3 Query: 559 RSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTK 380 R+++T ++K E KK+TT L +SPQ ++R + E E + +F Sbjct: 400 RNANTLLEK---EFKKFTTKLHTHSPQ------------SMRTDILFEMEKKYPEEFNRT 444 Query: 379 LYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSFFLKTEISS 224 L+ + + +DD+ L + L+ SD TE + ++ K ++++ Sbjct: 445 LHNKFRSLDDIAVTGYLY--HHYALLSGRALQSSDKTELVQQNHDFKKKLNN 494
>SACB4_NEIMA (Q84CZ9) Capsular polysaccharide phosphotransferase sacB (EC| 2.7.-.-) (Stealth protein sacB) Length = 545 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/112 (23%), Positives = 52/112 (46%) Frame = -3 Query: 559 RSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTK 380 R+++T ++K E KK+TT L +SPQ ++R + E E + +F Sbjct: 400 RNANTLLEK---EFKKFTTKLHTHSPQ------------SMRTDILFEMEKKYPEEFNRT 444 Query: 379 LYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSFFLKTEISS 224 L+ + + +DD+ L + L+ SD TE + ++ K ++++ Sbjct: 445 LHNKFRSLDDIAVTGYLY--HHYALLSGRALQSSDKTELVQQNHDFKKKLNN 494
>SACB3_NEIMA (Q83U59) Capsular polysaccharide phosphotransferase sacB (EC| 2.7.-.-) (Stealth protein sacB) Length = 545 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/112 (23%), Positives = 52/112 (46%) Frame = -3 Query: 559 RSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTK 380 R+++T ++K E KK+TT L +SPQ ++R + E E + +F Sbjct: 400 RNANTLLEK---EFKKFTTKLHTHSPQ------------SMRTDILFEMEKKYPEEFNRT 444 Query: 379 LYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSFFLKTEISS 224 L+ + + +DD+ L + L+ SD TE + ++ K ++++ Sbjct: 445 LHNKFRSLDDIAVTGYLY--HHYALLSGRALQSSDKTELVQQNHDFKKKLNN 494
>SACB2_NEIMA (O68215) Capsular polysaccharide phosphotransferase sacB (EC| 2.7.-.-) (Stealth protein sacB) Length = 545 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/112 (23%), Positives = 52/112 (46%) Frame = -3 Query: 559 RSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTK 380 R+++T ++K E KK+TT L +SPQ ++R + E E + +F Sbjct: 400 RNANTLLEK---EFKKFTTKLHTHSPQ------------SMRTDILFEMEKKYPEEFNRT 444 Query: 379 LYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSFFLKTEISS 224 L+ + + +DD+ L + L+ SD TE + ++ K ++++ Sbjct: 445 LHNKFRSLDDIAVTGYLY--HHYALLSGRALQSSDKTELVQQNHDFKKKLNN 494
>SACB1_NEIMA (Q9JWW8) Capsular polysaccharide phosphotransferase sacB (EC| 2.7.-.-) (Stealth protein sacB) Length = 545 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/112 (23%), Positives = 52/112 (46%) Frame = -3 Query: 559 RSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTK 380 R+++T ++K E KK+TT L +SPQ ++R + E E + +F Sbjct: 400 RNANTLLEK---EFKKFTTKLHTHSPQ------------SMRTDILFEMEKKYPEEFNRT 444 Query: 379 LYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDVTEEMARSFFLKTEISS 224 L+ + + +DD+ L + L+ SD TE + ++ K ++++ Sbjct: 445 LHNKFRSLDDIAVTGYLY--HHYALLSGRALQSSDKTELVQQNHDFKKKLNN 494
>MUTS2_CLOPE (Q8XJ80) MutS2 protein| Length = 786 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -3 Query: 466 EKALECFVALRKACIIEQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSKNVLLICKEEA 287 EK+++ R+A I+ + E+Y + +ER++ V D V +K +L KEEA Sbjct: 525 EKSIKAENDAREAAILRNDAEKYKNRYKEKFERIESVRDNVYADARREAKQILDSAKEEA 584
>SYI_MESFL (Q6F175) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 908 Score = 30.8 bits (68), Expect = 3.3 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%) Frame = -3 Query: 418 EQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSKNVL---------LICKEEAPDSDVTE 266 +Q+ E N+FVTK + DDV K ++ + ++ + K+E + + T Sbjct: 785 KQDFIESNEFVTKWNNIMVLRDDVNKALEIAREQKIINKGFEATVKVCLKDEFKNIESTT 844 Query: 265 EMARSFFLKTEISSE*DCSGSSRQ 194 E+ + F+ +S DCSG S Q Sbjct: 845 ELEK-IFIVNSLSFTNDCSGLSEQ 867
>MTD_METKA (P94951) F420-dependent methylenetetrahydromethanopterin| dehydrogenase (EC 1.5.99.9) (MTD) (Coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin dehydrogenase) Length = 282 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = -3 Query: 433 KACIIEQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDSDV 272 + C +EQ+ E Y V +E ++K ++ + L N ++ APD V Sbjct: 218 EGCFVEQDKERYVPIVASAHEMMRKAAELADEARELEKSNDAVLRTPHAPDGKV 271
>SCPA_MYCGA (Q7NB76) Segregation and condensation protein A| Length = 592 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = -3 Query: 538 QKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTKLYER--- 368 +K +E+ KY L+ + DY + FV L + +EY+QFV + +ER Sbjct: 100 KKTIEQAIKYADQLVISKLNADY---GCDLFVNLNYDDFSLVQTKEYDQFVVEYWERKPN 156 Query: 367 LKKVDDVVK 341 KK +D+++ Sbjct: 157 TKKPEDLIE 165
>CCNF_HUMAN (P41002) G2/mitotic-specific cyclin-F| Length = 786 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%) Frame = -3 Query: 478 GDYYEKALECFVALRKACIIEQEPEEYNQ---------FVTKLYERLKKVDDVVKFFQLL 326 G YE + C ++L K C + P++Y Q F K Y + + ++V+ + QL Sbjct: 479 GFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKRYGEISQ-EEVLSYSQLC 537 Query: 325 SSKNVLLICKEEAPD 281 ++ V +++PD Sbjct: 538 AALGV----TQDSPD 548
>TLK2_MOUSE (O55047) Serine/threonine-protein kinase tousled-like 2 (EC| 2.7.11.1) (Tousled-like kinase 2) Length = 718 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/70 (24%), Positives = 33/70 (47%) Frame = -3 Query: 496 IENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSK 317 +ENS D +K LR C + ++ +E + + K ERL + + K + SK Sbjct: 188 LENSKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKMLEKYKERLNRCVTMSKKLLIEKSK 247 Query: 316 NVLLICKEEA 287 + C++++ Sbjct: 248 QEKMACRDKS 257
>TACY_CLOPE (P19995) Perfringolysin O precursor (Theta-toxin) (Thiol-activated| cytolysin) Length = 500 Score = 29.6 bits (65), Expect = 7.2 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = -3 Query: 568 LAERSSSTWVQKAMEEMKKYTTALIENSPQ-GDYYEKALECFVALRKACIIEQEPEEYNQ 392 L SSS VQ A + + K T I+NS Q D YE + F A+ ++ + +E+N+ Sbjct: 281 LETTSSSKDVQAAFKALIKNTD--IKNSQQYKDIYENS--SFTAV----VLGGDAQEHNK 332 Query: 391 FVTKLYERLKKVDDVVKFFQLLSSKN 314 VTK ++ ++K V+K S+KN Sbjct: 333 VVTKDFDEIRK---VIKDNATFSTKN 355
>TLK2_HUMAN (Q86UE8) Serine/threonine-protein kinase tousled-like 2 (EC| 2.7.11.1) (Tousled-like kinase 2) (PKU-alpha) Length = 772 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/70 (24%), Positives = 33/70 (47%) Frame = -3 Query: 496 IENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTKLYERLKKVDDVVKFFQLLSSK 317 +ENS D +K LR C + ++ +E + + K ERL + + K + SK Sbjct: 220 LENSKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKMLEKYKERLNRCVTMSKKLLIEKSK 279 Query: 316 NVLLICKEEA 287 + C++++ Sbjct: 280 QEKMACRDKS 289
>YAF3_SCHPO (Q09857) Hypothetical protein C29E6.03c in chromosome I| Length = 1044 Score = 29.3 bits (64), Expect = 9.5 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 8/102 (7%) Frame = -3 Query: 559 RSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPE-------- 404 ++S T +++ + +KY L++N Q Y+ +E +E+E + Sbjct: 641 KTSKTNLEEQTQLAEKYHEELLDN--QQKLYDLRIELDYTKSNCKQMEEEMQVLREGHES 698 Query: 403 EYNQFVTKLYERLKKVDDVVKFFQLLSSKNVLLICKEEAPDS 278 E F+ + + K++DD+ F ++SSKN L+ + E S Sbjct: 699 EIKDFIEEHSKLTKQLDDIKNQFGIISSKNRDLLSELEKSKS 740
>ATG23_ASHGO (Q756Z7) Autophagy-related protein 23| Length = 407 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/74 (25%), Positives = 35/74 (47%) Frame = -3 Query: 577 EAMLAERSSSTWVQKAMEEMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEY 398 +AML+E T + K+ +E+ K T L+E+ LE + R A + +P E Sbjct: 267 KAMLSEHKQETQLLKSQQEVWKEVTTLVED----------LEDRIRTRFATAAKVDPVEL 316 Query: 397 NQFVTKLYERLKKV 356 + +T ++K + Sbjct: 317 RRLITDAITQIKSL 330
>TRM1_CAEEL (Q23270) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 526 Score = 29.3 bits (64), Expect = 9.5 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -3 Query: 523 EMKKYTTALIENSPQGDYYEKALECFVALRKACIIEQEPEEYNQFVTKLYERLKKVDDVV 344 + KY+ + +S G + + C + L + I P FVT L ERLK + Sbjct: 305 QQSKYSIPTVRHSISGPG-NRCIHCLLPLHQIGPIYLAPIHSKPFVTSLLERLKSTPEAE 363 Query: 343 KFFQLLSSKNVLLICKEEAPD 281 + + VL + EE D Sbjct: 364 RLGTHGRLQGVLTMVNEELDD 384
>CSN2_SCHPO (Q9HFR0) COP9 signalosome complex subunit 2 (CSN complex subunit 2)| (SGN2) Length = 437 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -3 Query: 466 EKALECFVALRKACIIEQEPEEYNQF--VTKLYERLKKVDDVVKFFQ-LLSSKNVLLICK 296 E AL F ++ + C EQ + +TK+ +LKK DD+++ +Q LL N L I K Sbjct: 47 ESALTSFYSIVEKCEGEQNEWAFKALKQITKINFQLKKYDDMLQSYQRLLGYTNWLSITK 106 Query: 295 EEAPDS 278 + S Sbjct: 107 NYSEKS 112
>HCLS1_HUMAN (P14317) Hematopoietic lineage cell-specific protein (Hematopoietic| cell-specific LYN substrate 1) (LckBP1) (p75) Length = 486 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +1 Query: 334 ERTSPHHPPSSVSRKAWSQIGYIPPAPVRLYRPSSEQQNTQVPFRSNLLEEN 489 E P P +S +AW +G P + R S E +P R L E+N Sbjct: 287 EPAVPAPLPKKISSEAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDN 338 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,282,035 Number of Sequences: 219361 Number of extensions: 1622064 Number of successful extensions: 4448 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4444 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
