ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63m11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2545 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| || || Sbjct: 1995 tgtacttctgcatctcttcaattgccgtctgaacccacgttgagctagatctctgtgtca 1936 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 1935 gcatggcttcaaaatcttgaacaggatt 1908 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgctgtcaggcgcttcttctttgcatatgagcaaaaca 314 |||||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||| || | Sbjct: 2245 ctcgccatctcttccgtcacatcgctatcaggtgcttcttctttgcttataagcgaagct 2186 Query: 315 ttcttggatgaaagaagctg 334 |||||||| ||||||||||| Sbjct: 2185 ttcttggacgaaagaagctg 2166
>ref|XM_470474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3562 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| || || Sbjct: 3012 tgtacttctgcatctcttcaattgccgtctgaacccacgttgagctagatctctgtgtca 2953 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 2952 gcatggcttcaaaatcttgaacaggatt 2925 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgctgtcaggcgcttcttctttgcatatgagcaaaaca 314 |||||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||| || | Sbjct: 3262 ctcgccatctcttccgtcacatcgctatcaggtgcttcttctttgcttataagcgaagct 3203 Query: 315 ttcttggatgaaagaagctg 334 |||||||| ||||||||||| Sbjct: 3202 ttcttggacgaaagaagctg 3183
>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0062G19, complete sequence Length = 92392 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| || || Sbjct: 68841 tgtacttctgcatctcttcaattgccgtctgaacccacgttgagctagatctctgtgtca 68782 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 68781 gcatggcttcaaaatcttgaacaggatt 68754 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 282 tcaggcgcttcttctttgcatatgagcaaaacattcttggatgaaagaagctg 334 ||||| ||||||||||||| ||| ||| || | |||||||| ||||||||||| Sbjct: 69202 tcaggtgcttcttctttgcttataagcgaagctttcttggacgaaagaagctg 69150 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgct 280 |||||||||||||| ||||||||||| Sbjct: 69323 ctcgccatctcttccgtcacatcgct 69298
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| || || Sbjct: 35814902 tgtacttctgcatctcttcaattgccgtctgaacccacgttgagctagatctctgtgtca 35814843 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 35814842 gcatggcttcaaaatcttgaacaggatt 35814815 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 282 tcaggcgcttcttctttgcatatgagcaaaacattcttggatgaaagaagctg 334 ||||| ||||||||||||| ||| ||| || | |||||||| ||||||||||| Sbjct: 35815263 tcaggtgcttcttctttgcttataagcgaagctttcttggacgaaagaagctg 35815211 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgct 280 |||||||||||||| ||||||||||| Sbjct: 35815384 ctcgccatctcttccgtcacatcgct 35815359
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| || || Sbjct: 35905032 tgtacttctgcatctcttcaattgccgtctgaacccacgttgagctagatctctgtgtca 35904973 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 35904972 gcatggcttcaaaatcttgaacaggatt 35904945 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 282 tcaggcgcttcttctttgcatatgagcaaaacattcttggatgaaagaagctg 334 ||||| ||||||||||||| ||| ||| || | |||||||| ||||||||||| Sbjct: 35905393 tcaggtgcttcttctttgcttataagcgaagctttcttggacgaaagaagctg 35905341 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgct 280 |||||||||||||| ||||||||||| Sbjct: 35905514 ctcgccatctcttccgtcacatcgct 35905489
>dbj|AK070146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042F12, full insert sequence Length = 3591 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| || || Sbjct: 3041 tgtacttctgcatctcttcaattgccgtctgaacccacgttgagctagatctctgtgtca 2982 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 2981 gcatggcttcaaaatcttgaacaggatt 2954 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgctgtcaggcgcttcttctttgcatatgagcaaaaca 314 |||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||| || | Sbjct: 3291 ctcgccatctcttccgtcacatcgctatcaggtgcttcttctttgcttatgagcgaagct 3232 Query: 315 ttcttggatgaaagaagctg 334 |||||||| ||||||||||| Sbjct: 3231 ttcttggacgaaagaagctg 3212
>dbj|AK120953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038P17, full insert sequence Length = 3386 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 508 tgtacttcttcatctcttccattgccttctgaacccatgttgagctagatctctctgcca 567 ||||||||| ||||||| | |||||| |||||||||| |||||||||||||||| || || Sbjct: 2769 tgtacttctgcatctctgcaattgccgtctgaacccacgttgagctagatctctgtgtca 2710 Query: 568 gcatggcttcaaaatctttaacaggatt 595 |||||||||||||||||| ||||||||| Sbjct: 2709 gcatggcttcaaaatcttgaacaggatt 2682 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 255 ctcgccatctcttcagtcacatcgctgtcaggcgcttcttctttgcatatgagcaaaaca 314 |||||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||| || | Sbjct: 3019 ctcgccatctcttccgtcacatcgctatcaggtgcttcttctttgcttataagcgaagct 2960 Query: 315 ttcttggatgaaagaagctg 334 |||||||| ||||||||||| Sbjct: 2959 ttcttggacgaaagaagctg 2940
>gb|AC025539.6| Homo sapiens BAC clone RP11-281P23 from 4, complete sequence Length = 77426 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 323 tgaaagaagctgaaagaacttcacca 348 |||||||||||||||||| ||||||| Sbjct: 51103 tgaaagaagctgaaagaatttcacca 51078
>gb|AC126182.2| Homo sapiens 3 BAC RP11-359H3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196944 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 340 acttcaccacatcatccaccttcttc 365 ||||||||||||||||| |||||||| Sbjct: 53916 acttcaccacatcatcccccttcttc 53891
>gb|AC009289.8|AC009289 Homo sapiens, clone RP11-44J3, complete sequence Length = 146010 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 340 acttcaccacatcatccaccttcttc 365 ||||||||||||||||| |||||||| Sbjct: 108882 acttcaccacatcatcccccttcttc 108857
>gb|AC149346.2| Phakopsora pachyrhizi clone JGIAFNA-33E14, complete sequence Length = 38941 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 116 atatcatgaccaaagcttcagaacat 141 |||||||||||||||||| ||||||| Sbjct: 1664 atatcatgaccaaagctttagaacat 1639
>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence Length = 159722 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 tgatgttagaatttttctact 189 ||||||||||||||||||||| Sbjct: 26707 tgatgttagaatttttctact 26727
>gb|AC073316.6| Homo sapiens BAC clone RP11-191P7 from 7, complete sequence Length = 148930 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agcaaaacattcttggatgaa 326 ||||||||||||||||||||| Sbjct: 34638 agcaaaacattcttggatgaa 34618
>emb|CR788305.17| Zebrafish DNA sequence from clone DKEYP-59G5 in linkage group 20, complete sequence Length = 187351 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 aatctttaacaggatttacat 600 ||||||||||||||||||||| Sbjct: 108621 aatctttaacaggatttacat 108601
>gb|AC107882.3| Homo sapiens chromosome 11, clone CTD-2019O4, complete sequence Length = 130916 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 tcttcatctcttccattgcct 534 ||||||||||||||||||||| Sbjct: 34927 tcttcatctcttccattgcct 34947
>gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, complete sequence Length = 133892 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 tcttcatctcttccattgcct 534 ||||||||||||||||||||| Sbjct: 36152 tcttcatctcttccattgcct 36132
>emb|BX537259.24| Zebrafish DNA sequence from clone CH211-241P10 in linkage group 20, complete sequence Length = 185460 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 580 aatctttaacaggatttacat 600 ||||||||||||||||||||| Sbjct: 49612 aatctttaacaggatttacat 49632
>ref|NM_105886.1| Arabidopsis thaliana unknown protein AT1G72270 mRNA, complete cds Length = 8334 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 315 atccaccttcttcagtctct 334
>ref|NM_117681.2| Arabidopsis thaliana unknown protein AT4G15890 mRNA, complete cds Length = 4182 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 463 atccaccttcttcagtctct 444
>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence Length = 259091 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 tcagtctctcgtaaagcttggtca 387 ||||||||||| |||||||||||| Sbjct: 47225 tcagtctctcgaaaagcttggtca 47248
>ref|XM_457782.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C02640g) partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 tcaaaatctttaacaggatt 595 |||||||||||||||||||| Sbjct: 224 tcaaaatctttaacaggatt 205
>gb|AE006333.1| Lactococcus lactis subsp. lactis IL1403 section 95 of 218 of the complete genome Length = 11167 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 gatatttcggttttcaagaa 247 |||||||||||||||||||| Sbjct: 4329 gatatttcggttttcaagaa 4348
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tctcttccattgccttctga 539 |||||||||||||||||||| Sbjct: 1881546 tctcttccattgccttctga 1881565
>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence Length = 226256 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 attgccttgaggacccagaacaat 216 |||||||| ||||||||||||||| Sbjct: 220078 attgccttcaggacccagaacaat 220101
>ref|XM_745988.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g12020) partial mRNA Length = 2238 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcaccaccatcgtctcagatacca 116 ||||||||||||||| |||||||| Sbjct: 736 gcaccaccatcgtctgagatacca 759
>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence Length = 190295 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 attgccttgaggacccagaacaat 216 |||||||| ||||||||||||||| Sbjct: 117306 attgccttcaggacccagaacaat 117283
>ref|XM_947841.1| Theileria annulata strain Ankara DEAD-box family helicase (TA07525) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 gatgaaagaagctgaaagaa 340 |||||||||||||||||||| Sbjct: 363 gatgaaagaagctgaaagaa 382
>emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 on chromosome 11p13 Contains the RCN1 gene for EF-hand calcium binding domain protein reticulocalbin 1, a seudogene similar to part of EIF4A (Eukaryotic Initiation Factor 4A), ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 94497 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 agaatttttctactaccatt 195 |||||||||||||||||||| Sbjct: 7185 agaatttttctactaccatt 7166
>gb|AC108713.2| Homo sapiens 3q BAC RP11-115O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158987 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 actgatgttagaatttttct 186 |||||||||||||||||||| Sbjct: 92131 actgatgttagaatttttct 92112
>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4 Length = 205065 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 186577 atccaccttcttcagtctct 186558
>emb|Y11187.1|AT23KB A.thaliana RH1, TC1, G14587-5, G14587-6, and PRL1 genes Length = 23918 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 15636 atccaccttcttcagtctct 15617
>gb|AE008873.1| Salmonella typhimurium LT2, section 177 of 220 of the complete genome Length = 21337 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 553 cttttcgtagtaatctcctt 572
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 tcaaaatctttaacaggatt 595 |||||||||||||||||||| Sbjct: 218092 tcaaaatctttaacaggatt 218111
>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 16/20 Length = 245050 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 208925 cttttcgtagtaatctcctt 208906
>emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 42 Length = 195068 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 143631 atccaccttcttcagtctct 143612
>emb|AL606809.8| Zebrafish DNA sequence from clone BUSM1-71J22 in linkage group 15 Contains to novel reverse transcriptase pseudogenes and a CpG island, complete sequence Length = 73260 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 gtgtacttcttcatctcttc 526 |||||||||||||||||||| Sbjct: 22438 gtgtacttcttcatctcttc 22419
>emb|AL606702.7| Zebrafish DNA sequence from clone BUSM1-172K9 in linkage group 15 Contains a novel transposase pseudogene and a putative novel gene, complete sequence Length = 102736 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 gtgtacttcttcatctcttc 526 |||||||||||||||||||| Sbjct: 84953 gtgtacttcttcatctcttc 84972
>emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 in linkage group 12, complete sequence Length = 189720 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 catccaccttcttcagtctc 371 |||||||||||||||||||| Sbjct: 55710 catccaccttcttcagtctc 55691
>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence Length = 197992 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 ctgccagcatggcttcaaaa 581 |||||||||||||||||||| Sbjct: 73519 ctgccagcatggcttcaaaa 73500
>gb|AC015821.9| Homo sapiens chromosome 17, clone RP11-160O5, complete sequence Length = 160184 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 gatgaaagaagctgaaagaa 340 |||||||||||||||||||| Sbjct: 74441 gatgaaagaagctgaaagaa 74460
>gb|AC108687.3| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128821 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 actgatgttagaatttttct 186 |||||||||||||||||||| Sbjct: 14115 actgatgttagaatttttct 14096
>gb|AC091884.4| Homo sapiens chromosome 5 clone RP11-109J4, complete sequence Length = 192149 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tcgtaaagcttggtcacaaa 391 |||||||||||||||||||| Sbjct: 64727 tcgtaaagcttggtcacaaa 64746
>ref|XM_393191.2| PREDICTED: Apis mellifera similar to ENSANGP00000011437 (LOC409693), mRNA Length = 1856 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cttcatctcttccattgcct 534 |||||||||||||||||||| Sbjct: 1767 cttcatctcttccattgcct 1786
>emb|BX814309.1|CNS0ADLA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB67ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1398 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 353 atccaccttcttcagtctct 372
>emb|BX814149.1|CNS0ADM5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZD01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1381 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 350 atccaccttcttcagtctct 369
>emb|BX816757.1|CNS0AAPK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1372 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 323 atccaccttcttcagtctct 342
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cttcagtctctcgtaaagct 381 |||||||||||||||||||| Sbjct: 845403 cttcagtctctcgtaaagct 845422
>gb|AC067754.6|AC067754 Arabidopsis thaliana chromosome 1 BAC T9N14 genomic sequence, complete sequence Length = 98874 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 74753 atccaccttcttcagtctct 74734 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 63865 atccaccttcttcagtctct 63846
>gb|AC090551.6| Homo sapiens chromosome 16 clone RP11-197K24, complete sequence Length = 174737 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ctgccagcatggcttcaaaa 581 |||||||||||||||||||| Sbjct: 2592 ctgccagcatggcttcaaaa 2611
>gb|AC068278.6| Homo sapiens BAC clone RP11-131G20 from 2, complete sequence Length = 156916 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 agcatggcttcaaaatcttt 586 |||||||||||||||||||| Sbjct: 111853 agcatggcttcaaaatcttt 111834
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 aagaagctgaaagaacttca 345 |||||||||||||||||||| Sbjct: 2544272 aagaagctgaaagaacttca 2544253
>ref|XM_216723.3| PREDICTED: Rattus norvegicus ninein (predicted) (Nin_predicted), mRNA Length = 8022 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 aagctcctcgccatctcttcagtc 272 |||||||||||| ||||||||||| Sbjct: 3926 aagctcctcgccttctcttcagtc 3903
>gb|AC106790.3| Homo sapiens chromosome 5 clone RP11-376E20, complete sequence Length = 73401 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 312 acattcttggatgaaagaagctgaaaga 339 ||||||||| ||||||||||| |||||| Sbjct: 13532 acattcttgtatgaaagaagcagaaaga 13505
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 3700157 cttttcgtagtaatctcctt 3700176
>dbj|AK176381.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL24-09-E23 Length = 1295 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 223 atccaccttcttcagtctct 242
>emb|X53847.1|STRFAIJ S. typhimurium rfaI and rfaJ genes for 1,3-galactosyltransferase and 1,2-glucosyltransferase respectively Length = 2622 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 2576 cttttcgtagtaatctcctt 2557
>gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequence Length = 137074 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tctcttccattgccttctga 539 |||||||||||||||||||| Sbjct: 21980 tctcttccattgccttctga 21999
>gb|AC145183.3| Macropus eugenii clone ME_KBa-60J17, complete sequence Length = 168360 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tctcttccattgccttctga 539 |||||||||||||||||||| Sbjct: 167276 tctcttccattgccttctga 167295
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 3922424 cttttcgtagtaatctcctt 3922405
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 aagaacttcaccacatcatc 355 |||||||||||||||||||| Sbjct: 586095 aagaacttcaccacatcatc 586114
>gb|AF026386.1|AF026386 Salmonella typhimurium strain LT2 LPS core oligosaccharide biosynthesis region, WaaY (waaY) gene, partial cds; WaaJ (waaJ), WaaI (waaI), WaaB (waaB), WaaP (waaP), WaaG (waaG), and WaaQ (waaQ) genes, complete cds; and WaaA (waaA) gene, partial cds Length = 8421 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 28 cttttcgtagtaatctcctt 47
>gb|AF001397.1|AF001397 Salmonella typhimurium putative lipopolysaccharide biosynthesis protein (rfaY) gene, complete cds Length = 800 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cttttcgtagtaatctcctt 480 |||||||||||||||||||| Sbjct: 305 cttttcgtagtaatctcctt 286
>emb|AJ002585.1|ATAJ2585 Arabidopsis thaliana Thionin gene Length = 2133 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 atccaccttcttcagtctct 372 |||||||||||||||||||| Sbjct: 918 atccaccttcttcagtctct 937
>emb|AL670195.10| Mouse DNA sequence from clone RP23-313O9 on chromosome 4, complete sequence Length = 202663 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ttctttgcatatgagcaaaa 312 |||||||||||||||||||| Sbjct: 166080 ttctttgcatatgagcaaaa 166061 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,055,291 Number of Sequences: 3902068 Number of extensions: 6055291 Number of successful extensions: 127223 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126964 Number of HSP's gapped (non-prelim): 259 length of query: 612 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 589 effective length of database: 17,143,297,704 effective search space: 10097402347656 effective search space used: 10097402347656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
