ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63m06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195751.1| Oryza sativa (japonica cultivar-group) unknown ... 48 0.007
2gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.007
3gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 geno... 48 0.007
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.007
5dbj|AK104034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.007
6dbj|AK071458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.007
7dbj|AK070152.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.007
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.007
9gb|AC160986.5| Mus musculus BAC clone RP23-258K21 from chromosom... 40 1.8
10gb|AC129342.5| Rattus norvegicus BAC CH230-229B21 (Children's H... 40 1.8
11gb|AC126259.4| Mus musculus BAC clone RP23-330F19 from chromosom... 40 1.8
12gb|U67950.2| Caenorhabditis elegans cosmid T01B6, complete sequence 38 7.2
13gb|BC066564.1| Danio rerio cDNA clone IMAGE:6967261, partial cds 38 7.2
14ref|XM_386498.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 38 7.2
15gb|AC121857.2| Mus musculus BAC clone RP24-98A9 from 1, complete... 38 7.2
16gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of... 38 7.2
17ref|NM_076019.2| Caenorhabditis elegans T10H10.1 (myosin) mRNA, ... 38 7.2
18gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, co... 38 7.2
19gb|U80848.1| Caenorhabditis elegans cosmid T10H10, complete sequ... 38 7.2 
>ref|NM_195751.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0008A05.1), mRNA
          Length = 824

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 104 gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
           |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 551 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 511
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>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0008A05, complete sequence
          Length = 124366

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 104   gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
             |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 44227 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 44187
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>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete
             sequence
          Length = 150465

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 104   gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
             |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 94692 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 94652
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 104     gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
               |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 8839620 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 8839580
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>dbj|AK104034.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G07, full
           insert sequence
          Length = 751

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 104 gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
           |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 480 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 440
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>dbj|AK071458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092O07, full
           insert sequence
          Length = 750

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 104 gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
           |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 479 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 439
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>dbj|AK070152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043A18, full
           insert sequence
          Length = 750

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 104 gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
           |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 479 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 439
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 104     gcccccttcatgacgnngncgagaccgaacccgtcggacga 144
               |||||||||||||||  | ||||||||||||| || |||||
Sbjct: 8844759 gcccccttcatgacgtcgtcgagaccgaacccttccgacga 8844719
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>gb|AC160986.5| Mus musculus BAC clone RP23-258K21 from chromosome 6, complete sequence
          Length = 209886

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     gtgacccttcttccctgaca 95
              ||||||||||||||||||||
Sbjct: 134797 gtgacccttcttccctgaca 134816
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>gb|AC129342.5| Rattus norvegicus  BAC CH230-229B21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224257

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     tgaacccctgagccatcttc 40
              ||||||||||||||||||||
Sbjct: 180448 tgaacccctgagccatcttc 180429
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>gb|AC126259.4| Mus musculus BAC clone RP23-330F19 from chromosome 6, complete sequence
          Length = 257100

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gtgacccttcttccctgaca 95
             ||||||||||||||||||||
Sbjct: 28260 gtgacccttcttccctgaca 28241
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>gb|U67950.2| Caenorhabditis elegans cosmid T01B6, complete sequence
          Length = 29326

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 130  gaacccgtcggacgatttc 148
            |||||||||||||||||||
Sbjct: 4262 gaacccgtcggacgatttc 4244
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>gb|BC066564.1| Danio rerio cDNA clone IMAGE:6967261, partial cds
          Length = 5902

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 32  gccatcttcatgaagccgc 50
           |||||||||||||||||||
Sbjct: 444 gccatcttcatgaagccgc 426
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>ref|XM_386498.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06322.1)
            partial mRNA
          Length = 4938

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 81   ccttcttccctgacagcga 99
            |||||||||||||||||||
Sbjct: 1568 ccttcttccctgacagcga 1586
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>gb|AC121857.2| Mus musculus BAC clone RP24-98A9 from 1, complete sequence
          Length = 171124

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     tgaacccctgagccatctt 39
              |||||||||||||||||||
Sbjct: 142084 tgaacccctgagccatctt 142102
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>gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of the complete genome
          Length = 10111

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 37   cttcatgaagccgccgccg 55
            |||||||||||||||||||
Sbjct: 3177 cttcatgaagccgccgccg 3159
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>ref|NM_076019.2| Caenorhabditis elegans T10H10.1 (myosin) mRNA, complete cds
          Length = 6555

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 130  gaacccgtcggacgatttc 148
            |||||||||||||||||||
Sbjct: 5457 gaacccgtcggacgatttc 5439
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>gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, complete sequence
          Length = 157784

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tgaacccctgagccatctt 39
             |||||||||||||||||||
Sbjct: 60352 tgaacccctgagccatctt 60370
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>gb|U80848.1| Caenorhabditis elegans cosmid T10H10, complete sequence
          Length = 37614

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 130   gaacccgtcggacgatttc 148
             |||||||||||||||||||
Sbjct: 36176 gaacccgtcggacgatttc 36158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 830,264
Number of Sequences: 3902068
Number of extensions: 830264
Number of successful extensions: 59360
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59303
Number of HSP's gapped (non-prelim): 57
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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