ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL096866.10|HSJ247G22 Human DNA sequence from clone RP1-247G... 44 0.25
2gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital... 42 1.0
3emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 40 4.0
4emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4,... 40 4.0
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
7dbj|AK110994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
8emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.0
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
10emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.0
11emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.0
12dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 4.0

>emb|AL096866.10|HSJ247G22 Human DNA sequence from clone RP1-247G22 on chromosome 6p12.2-21.2,
             complete sequence
          Length = 120487

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 158   agaagctggatggtcgtggaag 179
             ||||||||||||||||||||||
Sbjct: 34333 agaagctggatggtcgtggaag 34312



to top

>gb|AC150573.4| Bos taurus  BAC CH240-238N22 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 163445

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    ctgaagattacctagagtaac 50
             |||||||||||||||||||||
Sbjct: 93166 ctgaagattacctagagtaac 93146



to top

>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
             complete sequence
          Length = 150416

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   cttaagagaagctggatggt 171
             ||||||||||||||||||||
Sbjct: 79748 cttaagagaagctggatggt 79767



to top

>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
              complete sequence
          Length = 126659

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    cttaagagaagctggatggt 171
              ||||||||||||||||||||
Sbjct: 115334 cttaagagaagctggatggt 115353



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      cttaagagaagctggatggt 171
                ||||||||||||||||||||
Sbjct: 32720313 cttaagagaagctggatggt 32720332



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 156     agagaagctggatggtcgtggaag 179
               |||||||||| |||||||||||||
Sbjct: 4082625 agagaagctgaatggtcgtggaag 4082648



to top

>dbj|AK110994.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E02, full
           insert sequence
          Length = 1816

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 156 agagaagctggatggtcgtggaag 179
           |||||||||| |||||||||||||
Sbjct: 841 agagaagctgaatggtcgtggaag 864



to top

>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete
             sequence
          Length = 76529

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   cttaagagaagctggatggt 171
             ||||||||||||||||||||
Sbjct: 52614 cttaagagaagctggatggt 52633



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 156     agagaagctggatggtcgtggaag 179
               |||||||||| |||||||||||||
Sbjct: 4082612 agagaagctgaatggtcgtggaag 4082635



to top

>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 123469

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   agagaagctggatggtcgtggaag 179
             |||||||||| |||||||||||||
Sbjct: 25021 agagaagctgaatggtcgtggaag 25044



to top

>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 156    agagaagctggatggtcgtggaag 179
              |||||||||| |||||||||||||
Sbjct: 119046 agagaagctgaatggtcgtggaag 119069



to top

>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete
              sequence
          Length = 186978

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    caacaaggaaaaactgcttggcat 212
              ||||||||||||||| ||||||||
Sbjct: 120541 caacaaggaaaaactccttggcat 120564


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,493,157
Number of Sequences: 3902068
Number of extensions: 2493157
Number of successful extensions: 44464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44403
Number of HSP's gapped (non-prelim): 61
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top