Clone Name | rbah63m01 |
---|---|
Clone Library Name | barley_pub |
>emb|AL096866.10|HSJ247G22 Human DNA sequence from clone RP1-247G22 on chromosome 6p12.2-21.2, complete sequence Length = 120487 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 158 agaagctggatggtcgtggaag 179 |||||||||||||||||||||| Sbjct: 34333 agaagctggatggtcgtggaag 34312
>gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 163445 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 ctgaagattacctagagtaac 50 ||||||||||||||||||||| Sbjct: 93166 ctgaagattacctagagtaac 93146
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cttaagagaagctggatggt 171 |||||||||||||||||||| Sbjct: 79748 cttaagagaagctggatggt 79767
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence Length = 126659 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cttaagagaagctggatggt 171 |||||||||||||||||||| Sbjct: 115334 cttaagagaagctggatggt 115353
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cttaagagaagctggatggt 171 |||||||||||||||||||| Sbjct: 32720313 cttaagagaagctggatggt 32720332
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 agagaagctggatggtcgtggaag 179 |||||||||| ||||||||||||| Sbjct: 4082625 agagaagctgaatggtcgtggaag 4082648
>dbj|AK110994.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E02, full insert sequence Length = 1816 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 agagaagctggatggtcgtggaag 179 |||||||||| ||||||||||||| Sbjct: 841 agagaagctgaatggtcgtggaag 864
>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete sequence Length = 76529 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cttaagagaagctggatggt 171 |||||||||||||||||||| Sbjct: 52614 cttaagagaagctggatggt 52633
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 agagaagctggatggtcgtggaag 179 |||||||||| ||||||||||||| Sbjct: 4082612 agagaagctgaatggtcgtggaag 4082635
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 agagaagctggatggtcgtggaag 179 |||||||||| ||||||||||||| Sbjct: 25021 agagaagctgaatggtcgtggaag 25044
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 agagaagctggatggtcgtggaag 179 |||||||||| ||||||||||||| Sbjct: 119046 agagaagctgaatggtcgtggaag 119069
>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete sequence Length = 186978 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 caacaaggaaaaactgcttggcat 212 ||||||||||||||| |||||||| Sbjct: 120541 caacaaggaaaaactccttggcat 120564 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,493,157 Number of Sequences: 3902068 Number of extensions: 2493157 Number of successful extensions: 44464 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44403 Number of HSP's gapped (non-prelim): 61 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)