ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT016698.1| Zea mays clone Contig531 mRNA sequence 100 7e-18
2gb|AY148193.1| Synthetic construct thioredoxin/transketolase fus... 100 7e-18
3ref|XM_550612.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
4gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete se... 92 2e-15
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
7dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
8dbj|AK119542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
9dbj|AK105053.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
10dbj|AK067452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
11emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen all... 44 0.38
12ref|XM_765191.1| Giardia lamblia ATCC 50803 glyceraldehyde 3-pho... 44 0.38
13emb|AL356796.16| Human DNA sequence from clone RP11-82I1 on chro... 44 0.38
14gb|M88062.1|GIAGLYALPH Giardia intestinalis glyceraldehyde 3-pho... 44 0.38
15ref|XM_322348.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
16ref|XM_952641.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
17gb|AE009185.1| Agrobacterium tumefaciens str. C58 circular chrom... 42 1.5
18gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 1.5
19gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequ... 42 1.5
20gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 42 1.5
21gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.5
22gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 5.9
23gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.9
24gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.9
25ref|XM_784712.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.9
26emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 5.9
27gb|AC126122.2| Homo sapiens chromosome 3 clone RP11-751K5, compl... 40 5.9
28gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, compl... 40 5.9
29gb|AC010621.7| Homo sapiens chromosome 5 clone CTD-2034J20, comp... 40 5.9
30gb|AF400075.1|AF400075 Homo sapiens coagulation factor II (throm... 40 5.9
31gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 5.9
32dbj|AK110336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
33emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.9
34emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-6... 40 5.9
35gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, compl... 40 5.9

>gb|BT016698.1| Zea mays clone Contig531 mRNA sequence
          Length = 1691

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 86/98 (87%)
 Strand = Plus / Minus

                                                                        
Query: 303  gtgatgccgtactccttgtagatcttgggggcaggagcgctggcgccgaacttgtcgatg 362
            |||||||||||||||||||||||| |   ||||||||| || ||||||||||||||||||
Sbjct: 1195 gtgatgccgtactccttgtagatcgtcccggcaggagcactcgcgccgaacttgtcgatg 1136

                                                  
Query: 363  ccgatggtcttgcccttggacccgacgtacttttgcca 400
            || |||| |||||||| ||  ||||||||||| |||||
Sbjct: 1135 ccaatggccttgccctgggctccgacgtacttctgcca 1098



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 45/47 (95%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 91   acaacgcaaatggaaaa-ggcattgtttattacaggcctagaaatac 136
            |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1427 acaacgtaaatggaaaaaggcattgtttattacaggcctagaaatac 1381



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>gb|AY148193.1| Synthetic construct thioredoxin/transketolase fusion protein gene,
            complete cds
          Length = 2415

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 86/98 (87%)
 Strand = Plus / Minus

                                                                        
Query: 303  gtgatgccgtactccttgtagatcttgggggcaggagcgctggcgccgaacttgtcgatg 362
            |||||||||||||||||||||||| |   ||||||||| || ||||||||||||||||||
Sbjct: 2378 gtgatgccgtactccttgtagatcgtcccggcaggagcactcgcgccgaacttgtcgatg 2319

                                                  
Query: 363  ccgatggtcttgcccttggacccgacgtacttttgcca 400
            || |||| |||||||| ||  ||||||||||| |||||
Sbjct: 2318 ccaatggccttgccctgggctccgacgtacttctgcca 2281



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>ref|XM_550612.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2281

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 2041 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1982

                                                                        
Query: 324  atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
            |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 1981 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1922

                              
Query: 384  ccgacgtacttttgccat 401
            ||||||||||| ||||||
Sbjct: 1921 ccgacgtacttctgccat 1904



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 2212 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 2155

                                                                  
Query: 153  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 2154 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 2105



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>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence
          Length = 136866

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                          
Query: 264    tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
              |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 128493 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 128552

                                                                          
Query: 324    atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
              |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 128553 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 128612

                                
Query: 384    ccgacgtacttttgccat 401
              ||||||||||| ||||||
Sbjct: 128613 ccgacgtacttctgccat 128630



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                          
Query: 93     aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
              |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 128322 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 128379

                                                                    
Query: 153    caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
              ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 128380 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 128429



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                           
Query: 264     tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
               |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 1808201 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1808260

                                                                           
Query: 324     atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
               |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 1808261 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1808320

                                 
Query: 384     ccgacgtacttttgccat 401
               ||||||||||| ||||||
Sbjct: 1808321 ccgacgtacttctgccat 1808338



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                           
Query: 93      aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
               |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 1808030 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 1808087

                                                                     
Query: 153     caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
               ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 1808088 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 1808137



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>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0001H02
          Length = 147160

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                        
Query: 264  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 8679 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 8738

                                                                        
Query: 324  atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
            |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 8739 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 8798

                              
Query: 384  ccgacgtacttttgccat 401
            ||||||||||| ||||||
Sbjct: 8799 ccgacgtacttctgccat 8816



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                        
Query: 93   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 8508 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 8565

                                                                  
Query: 153  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 8566 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 8615



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>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0679C08
          Length = 156266

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                          
Query: 264    tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
              |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 133350 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 133409

                                                                          
Query: 324    atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
              |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 133410 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 133469

                                
Query: 384    ccgacgtacttttgccat 401
              ||||||||||| ||||||
Sbjct: 133470 ccgacgtacttctgccat 133487



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                          
Query: 93     aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
              |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 133179 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 133236

                                                                    
Query: 153    caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
              ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 133237 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 133286



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>dbj|AK119542.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D07, full
           insert sequence
          Length = 1104

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Minus

                                                                       
Query: 264 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
           |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 884 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 825

                                                                       
Query: 324 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
           |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 824 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 765

                             
Query: 384 ccgacgtacttttgccat 401
           ||||||||||| ||||||
Sbjct: 764 ccgacgtacttctgccat 747



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 1055 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 998

                                                                  
Query: 153  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 997  caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 948



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>dbj|AK105053.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E06, full
            insert sequence
          Length = 2001

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 1719 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1660

                                                                        
Query: 324  atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
            |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 1659 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1600

                              
Query: 384  ccgacgtacttttgccat 401
            ||||||||||| ||||||
Sbjct: 1599 ccgacgtacttctgccat 1582



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 1890 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 1833

                                                                  
Query: 153  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 1832 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 1783



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>dbj|AK067452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107D17, full
            insert sequence
          Length = 2280

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 323
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 2040 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1981

                                                                        
Query: 324  atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 383
            |||||    |||||||| || || ||||| ||||||||||| || | |||||| |||   
Sbjct: 1980 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1921

                              
Query: 384  ccgacgtacttttgccat 401
            ||||||||||| ||||||
Sbjct: 1920 ccgacgtacttctgccat 1903



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 152
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 2211 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 2154

                                                                  
Query: 153  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 206
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 2153 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 2104



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>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4
          Length = 1272

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 286 cgatgacgttctctgcagtgatgccgtact 315
           |||||||||||||||| | |||||||||||
Sbjct: 338 cgatgacgttctctgcggcgatgccgtact 309



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>ref|XM_765191.1| Giardia lamblia ATCC 50803 glyceraldehyde 3-phosphate dehydrogenase
            (GLP_80_19533_18523) partial mRNA
          Length = 1011

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 374  gcccttggacccgacgtacttt 395
            ||||||||||||||||||||||
Sbjct: 1005 gcccttggacccgacgtacttt 984



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>emb|AL356796.16| Human DNA sequence from clone RP11-82I1 on chromosome 9 Contains the 3'
             end of a novel gene (FLJ11985, MGC11337) (KIAA0870), the
             ORM1 gene for orosomucoid 1 (AGP1, AGP-A), the ORM2 gene
             for orosomucoid 2 (AGP2, AGP-B) and the gene for AT-hook
             transcription factor AKNA, complete sequence
          Length = 125673

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 259   gctggtcttacaggctcttggctgcg 284
             |||||||||||||| |||||||||||
Sbjct: 39266 gctggtcttacaggttcttggctgcg 39241



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>gb|M88062.1|GIAGLYALPH Giardia intestinalis glyceraldehyde 3-phosphate dehydrogenase (gap1)
            gene, complete cds
          Length = 1178

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 374  gcccttggacccgacgtacttt 395
            ||||||||||||||||||||||
Sbjct: 1161 gcccttggacccgacgtacttt 1140



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>ref|XM_322348.1| Neurospora crassa OR74A hypothetical protein (NCU00263.1) partial
            mRNA
          Length = 2631

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 362  gccgatggtcttgcccttgga 382
            |||||||||||||||||||||
Sbjct: 2403 gccgatggtcttgcccttgga 2383



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>ref|XM_952641.1| Neurospora crassa OR74A hypothetical protein (NCU00263.1) partial
            mRNA
          Length = 2631

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 362  gccgatggtcttgcccttgga 382
            |||||||||||||||||||||
Sbjct: 2403 gccgatggtcttgcccttgga 2383



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>gb|AE009185.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 211
            of 256 of the complete sequence
          Length = 12100

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 360  atgccgatggtcttgcccttg 380
            |||||||||||||||||||||
Sbjct: 4337 atgccgatggtcttgcccttg 4357



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 296    ctctgcagtgatgccgtactc 316
              |||||||||||||||||||||
Sbjct: 330738 ctctgcagtgatgccgtactc 330758



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>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 359    gatgccgatggtcttgccctt 379
              |||||||||||||||||||||
Sbjct: 171928 gatgccgatggtcttgccctt 171908



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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 360     atgccgatggtcttgcccttg 380
               |||||||||||||||||||||
Sbjct: 2340060 atgccgatggtcttgcccttg 2340080



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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 345     gcgccgaacttgtcgatgccgatgg 369
               ||||||||| |||||||||||||||
Sbjct: 2085843 gcgccgaacgtgtcgatgccgatgg 2085867



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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 284    ggcgatgacgttctctgcagtgatgccg 311
              ||||||||||| ||| ||||||||||||
Sbjct: 119991 ggcgatgacgtactcagcagtgatgccg 120018



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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 356     gtcgatgccgatggtcttgccctt 379
               ||||| ||||||||||||||||||
Sbjct: 3108742 gtcgacgccgatggtcttgccctt 3108765



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 360     atgccgatggtcttgccctt 379
               ||||||||||||||||||||
Sbjct: 1345343 atgccgatggtcttgccctt 1345324



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>ref|XM_784712.1| PREDICTED: Strongylocentrotus purpuratus similar to DEAD
           (Asp-Glu-Ala-Asp) box polypeptide 23 (LOC584867),
           partial mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 157 catcctcctctccctccgtt 176
           ||||||||||||||||||||
Sbjct: 585 catcctcctctccctccgtt 566



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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 104     aaaaggcattgtttattacaggcc 127
               |||||||||||||||| |||||||
Sbjct: 1831511 aaaaggcattgtttataacaggcc 1831488



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>gb|AC126122.2| Homo sapiens chromosome 3 clone RP11-751K5, complete sequence
          Length = 3917

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  ttccaagctttctgggcacg 197
            ||||||||||||||||||||
Sbjct: 2973 ttccaagctttctgggcacg 2954



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>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence
          Length = 192063

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 178 ttccaagctttctgggcacg 197
           ||||||||||||||||||||
Sbjct: 830 ttccaagctttctgggcacg 811



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>gb|AC010621.7| Homo sapiens chromosome 5 clone CTD-2034J20, complete sequence
          Length = 52368

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   attgtttattacaggcctagaaat 134
             |||||||||||||| |||||||||
Sbjct: 36359 attgtttattacagccctagaaat 36382



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>gb|AF400075.1|AF400075 Homo sapiens coagulation factor II (thrombin) receptor-like 1 (F2RL1)
            gene, complete cds
          Length = 18351

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 111  attgtttattacaggcctagaaat 134
            |||||||||||||| |||||||||
Sbjct: 8934 attgtttattacagccctagaaat 8957



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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 349     cgaacttgtcgatgccgatg 368
               ||||||||||||||||||||
Sbjct: 2234310 cgaacttgtcgatgccgatg 2234329



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>dbj|AK110336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-E12, full
            insert sequence
          Length = 2492

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 333  gcaggagcgctggcgccgaacttgtcgatgcc 364
            ||||| |||||||||||||| | |||||||||
Sbjct: 2107 gcaggtgcgctggcgccgaaatcgtcgatgcc 2076



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 361     tgccgatggtcttgcccttg 380
               ||||||||||||||||||||
Sbjct: 5534504 tgccgatggtcttgcccttg 5534485



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>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170588

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   tcctcctctccctccgttat 178
             ||||||||||||||||||||
Sbjct: 25608 tcctcctctccctccgttat 25589



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>gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, complete sequence
          Length = 107278

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   attgtttattacaggcctagaaat 134
             |||||||||||||| |||||||||
Sbjct: 94759 attgtttattacagccctagaaat 94736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,021,155
Number of Sequences: 3902068
Number of extensions: 3021155
Number of successful extensions: 58056
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57819
Number of HSP's gapped (non-prelim): 213
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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