ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah63l17 |
|---|---|
| Clone Library Name | barley_pub |
>YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)| (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) Length = 715 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/39 (53%), Positives = 25/39 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 E+YER H+LK H K+ LA ALL ETL A EI V+ Sbjct: 669 ESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707
>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)| (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) Length = 715 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/39 (53%), Positives = 25/39 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 E+YER H+LK H K+ LA ALL ETL A EI V+ Sbjct: 669 ESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707
>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 637 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 + YE +L KH QLH LANAL+E ETL+ +I ++ Sbjct: 555 QGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNLL 593
>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 637 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 + YE +L KH QLH LANAL+E ETL+ +I ++ Sbjct: 555 QGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNLL 593
>YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)| Length = 676 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/39 (46%), Positives = 28/39 (71%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 E+Y+R +L+ +K+ LA ALLE ETL+ADE+ +V+ Sbjct: 599 ESYKRAKVILETKKKEHQLLAEALLEYETLSADEVKRVI 637
>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)| (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin-associated metalloprotease) (PAMP) Length = 773 Score = 38.9 bits (89), Expect = 0.011 Identities = 20/39 (51%), Positives = 25/39 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 ++YER H+LK H K+ LA ALL ETL A EI V+ Sbjct: 727 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 765
>FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) Length = 706 Score = 35.0 bits (79), Expect = 0.16 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADE 488 +AYER T ++ H LH LA L+E+ET+ +E Sbjct: 658 KAYERATQIINTHIDILHKLAQLLIEKETVDGEE 691
>YME1_YEAST (P32795) Protein YME1 (EC 3.4.24.-) (TAT-binding homolog 11) (OSD1| protein) Length = 747 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/38 (47%), Positives = 23/38 (60%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKV 476 ++ ER LL K +LH LA L+E ETL A EI +V Sbjct: 669 DSEERARRLLTKKNVELHRLAQGLIEYETLDAHEIEQV 706
>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (DS9) Length = 714 Score = 34.3 bits (77), Expect = 0.27 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = -1 Query: 586 AYERVTHLLKKHEKQLHALANALLERETLTADE 488 AYER T ++ H LH LA L+E+ET+ +E Sbjct: 660 AYERATEIITTHIDILHKLAQLLIEKETVDGEE 692
>FTSH_LACLA (P46469) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 695 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEI 485 EAY+R ++ H +Q A+A ALL+ ETL A +I Sbjct: 594 EAYDRAKEAIETHREQHKAIAEALLKYETLDAKQI 628
>FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 679 Score = 33.1 bits (74), Expect = 0.61 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVVH 470 E Y R +L +++ L +A LL+ ETL A++I +VH Sbjct: 568 ECYARCKQILLENKDSLDLVAKTLLDMETLDAEQIKSLVH 607
>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast| precursor (EC 3.4.24.-) Length = 716 Score = 33.1 bits (74), Expect = 0.61 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADE 488 +AY+R T ++ H LH LA L+E+ET+ +E Sbjct: 668 KAYKRATEIITTHIDILHKLAQLLIEKETVDGEE 701
>FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 609 Score = 32.7 bits (73), Expect = 0.80 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 E Y V LL + ++ L +A LLERET+ DE +V+ Sbjct: 540 ERYRAVVALLTEKKELLEYIATRLLERETIERDEFEEVI 578
>FTSH_AQUAE (O67077) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 634 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/38 (34%), Positives = 26/38 (68%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKV 476 E YE+ +++++++ L A+ LLE+ET+T +E +V Sbjct: 557 EQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEV 594
>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 637 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 E YER +L ++ +L +A LL+ ETL A++I ++ Sbjct: 563 ECYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLI 601
>YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)| Length = 662 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 ++ RV LL KQ LA ALL ETLT DE+ V+ Sbjct: 555 DSLTRVRTLLSSQSKQHKLLAEALLHFETLTKDEVLAVL 593
>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)| Length = 795 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1 Query: 589 EAYERVTHLLKKHEKQLHALANALLERETLTADEINKVV 473 +AY +L+ + +L ALANALLE+E + ++I ++ Sbjct: 709 KAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEALI 747 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,733,943 Number of Sequences: 219361 Number of extensions: 1622979 Number of successful extensions: 3587 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3526 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3587 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
