ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSB2_YEAST (P32334) Protein MSB2 (Multicopy suppressor of bud em... 30 2.6
2EXOC3_HUMAN (O60645) Exocyst complex component 3 (Exocyst comple... 28 9.9

>MSB2_YEAST (P32334) Protein MSB2 (Multicopy suppressor of bud emergence 2)|
          Length = 1306

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 305 RLRDKRLHSRESRSVVEEDDDAPIPSMQERWQSSETLERLMGVMLVCSR--LSSHGGKLE 132
           ++ D  + S  SRS V +  D P+PS   R   S+T   L        R  +S+HG   E
Sbjct: 784 QVSDTSVPSTSSRSSVSQVSDTPVPSTSSRSSVSQTSSSLQPTTTSSQRFTISTHGALSE 843



to top

>EXOC3_HUMAN (O60645) Exocyst complex component 3 (Exocyst complex component|
           Sec6)
          Length = 756

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 3   QKRTNLKRPEQQLEGRGEKFRERDQLAF 86
           QKR + + PE++ EG  +  RE +QL F
Sbjct: 623 QKRISFRSPEERKEGAEKMVREAEQLRF 650


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,453,615
Number of Sequences: 219361
Number of extensions: 930583
Number of successful extensions: 2410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top