>DBP4_SCHPO (Q9UTP9) ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)|
          Length = 735

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 290 KTTITQWSRSANHTSIYVADCKSQFMFHPCAEWSCEADEPCDPDTCT*RLG 138
           +T +T    S+ H  ++  D  ++ +  P  +W  + D P D DT   R+G
Sbjct: 324 RTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374

>DBP4_GIBZE (Q4IAS1) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-)|
          Length = 793

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 293 AKTTITQWSRSANHTSIYVADCKSQFMFHPCAEWSCEADEPCDPDTCT*RLG 138
           A+  IT    +A  T ++  D  ++ +  P  +W  +AD P D DT   R+G
Sbjct: 335 ARMEITSRFTAAKQTCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVG 386

>DBP4_NEUCR (Q7RZ35) ATP-dependent RNA helicase dbp-4 (EC 3.6.1.-)|
          Length = 823

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 293 AKTTITQWSRSANHTSIYVADCKSQFMFHPCAEWSCEADEPCDPDTCT*RLG 138
           A+  IT    SA ++ ++  D  ++ +  P  +W  + D P D DT   R+G
Sbjct: 341 ARLEITNRFTSAKYSCLFATDVVARGVDFPAVDWVIQVDCPEDADTYIHRVG 392

>SLIT3_RAT (O88280) Slit homolog 3 protein precursor (Slit-3) (Multiple|
           epidermal growth factor-like domains 5)
          Length = 1523

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 195 LCTRVEHKLGLTICDINARMIGAPAPLCDCRFCKENNLEIRFYPLCSNLINLCHIRVLFQ 374
           LC    H  G ++ D+  +    P P  +   C  N+L       CSN I  C  + L +
Sbjct: 241 LCMAPVHLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTE 300

Query: 375 I 377
           I
Sbjct: 301 I 301

>SLIT3_MOUSE (Q9WVB4) Slit homolog 3 protein precursor (Slit-3) (Slit3)|
          Length = 1523

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 195 LCTRVEHKLGLTICDINARMIGAPAPLCDCRFCKENNLEIRFYPLCSNLINLCHIRVLFQ 374
           LC    H  G ++ D+  +    P P  +   C  N+L       CSN I  C  + L +
Sbjct: 241 LCMAPVHLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTE 300

Query: 375 I 377
           I
Sbjct: 301 I 301

>SLIT3_HUMAN (O75094) Slit homolog 3 protein precursor (Slit-3) (Multiple|
           epidermal growth factor-like domains 5)
          Length = 1523

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 195 LCTRVEHKLGLTICDINARMIGAPAPLCDCRFCKENNLEIRFYPLCSNLINLCHIRVLFQ 374
           LC    H  G  + D+  +    PAP  +   C  N++       CSN I  C  + L +
Sbjct: 241 LCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLME 300

Query: 375 I 377
           I
Sbjct: 301 I 301

>PARC_SALTY (P26973) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase|
           IV subunit A)
          Length = 752

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -2

Query: 461 RAEFHKVVNHMLIVDEFENAWAMSLKRYNLKQHTYMTEIYEIRTKWV 321
           R +  +V+NH+    + E ++ ++L    L     +  + EI T+W+
Sbjct: 305 RVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWL 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,191,737
Number of Sequences: 219361
Number of extensions: 1799310
Number of successful extensions: 4584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4582
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)