>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 106  ALQ*FSFTTTAPLPTDQNLLCFLLSAWGISSLPPKCPSRG 225
            A+  FS   T+PLPT   +L  ++  W  S + P   + G
Sbjct: 1792 AMMAFSAALTSPLPTSTTILLNIMGGWLASQIAPAAGATG 1831

>NING_BPH19 (O48427) Protein ninG|
          Length = 201

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 69  KPQNRKCNLT-EWSAPIIQFYNYCSTSHGSK 158
           KP  RKC +  EW  P      +CS  HG+K
Sbjct: 3   KPARRKCKICKEWFHPAFSNQWWCSPEHGTK 33

>SPP1_SCHPO (O74508) Set1 complex component spp1 (Set1C component spp1)|
           (COMPASS component spp1) (Complex proteins associated
           with set1 protein spp1)
          Length = 424

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 81  RKCNLTEWSAPIIQFYNYCSTSHG 152
           RKC L E S P     NYCS  HG
Sbjct: 177 RKCRLRECSNPTRPNSNYCSDKHG 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,416,047
Number of Sequences: 219361
Number of extensions: 1361394
Number of successful extensions: 3409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)