>emb|AJ872264.1| Festuca glaucescens x Lolium multiflorum microsatellite DNA, clone
           B5-D12
          Length = 620

 Score =  143 bits (72), Expect = 6e-31
 Identities = 108/120 (90%)
 Strand = Plus / Minus

                                                                       
Query: 271 actttacggagtagaggttcccagggatgttatcggcagccctgtcgcgcacccaggtct 330
           ||||||| |||||||||||||| |||||||| ||||| ||| |||||||||||||||  |
Sbjct: 593 actttacagagtagaggttcccggggatgttgtcggcggccttgtcgcgcacccaggatt 534

                                                                       
Query: 331 tgccgccattggttgttttcagcaggacgccgctcccaccggctgcccacgcctcatcct 390
           ||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 533 tgccgccgttttttgttttcagcaggacgccgcttccaccggcagcccacgcctcatcct 474



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 388 cctttgagcggtagcccacgtccagaattccaaacccccggctttgtaccgacgcttcct 447
           ||||||||||||||||||| || || |||||||| |||| ||| || ||||| |||||||
Sbjct: 389 cctttgagcggtagcccacatcgaggattccaaatcccctgctctgcaccgaagcttcct 330

                            
Query: 448 caaagtcttcaactatc 464
           |||||||||||||||||
Sbjct: 329 caaagtcttcaactatc 313

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                            
Query: 388      cctttgagcggtagcccacgtccagaattccaaacccccggctttgtaccgacgcttcct 447
                |||||||||||||||| || || ||||||||||||||||||||||| || ||||||||||
Sbjct: 30574927 cctttgagcggtagccaacatcaagaattccaaacccccggctttgcactgacgcttcct 30574986

                           
Query: 448      caaagtcttca 458
                |||||||||||
Sbjct: 30574987 caaagtcttca 30574997



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                            
Query: 271      actttacggagtagaggttcccagggatgttatcggcagccctgtcgcgcacccaggtct 330
                ||||||| |||||||| ||  | | ||||||||| |||||  ||||||||||||||||||
Sbjct: 30574728 actttacagagtagagattggctgcgatgttatcagcagctttgtcgcgcacccaggtct 30574787

                                                                            
Query: 331      tgccgccattggttgttttcagcaggacgccgctcccaccggctgcccacgcctcatcct 390
                | |||||||| |||||||| |||||||| || || |||||||| ||||| || |||||||
Sbjct: 30574788 tcccgccatttgttgtttttagcaggacaccacttccaccggcggcccatgcttcatcct 30574847



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                            
Query: 206      tcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaaccttggttgtcccc 265
                ||||||||| ||||| |||||||||||||||||||| |||||  | |||| |||||| ||
Sbjct: 30574539 tcagccaacatatcgaagcaagacgccgtcgttcccaagcacgtatcctttgttgtcacc 30574598

                       
Query: 266      aatgaac 272
                || ||||
Sbjct: 30574599 aaggaac 30574605

>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0069C14
          Length = 150579

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                         
Query: 388   cctttgagcggtagcccacgtccagaattccaaacccccggctttgtaccgacgcttcct 447
             |||||||||||||||| || || ||||||||||||||||||||||| || ||||||||||
Sbjct: 73490 cctttgagcggtagccaacatcaagaattccaaacccccggctttgcactgacgcttcct 73549

                        
Query: 448   caaagtcttca 458
             |||||||||||
Sbjct: 73550 caaagtcttca 73560



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                         
Query: 271   actttacggagtagaggttcccagggatgttatcggcagccctgtcgcgcacccaggtct 330
             ||||||| |||||||| ||  | | ||||||||| |||||  ||||||||||||||||||
Sbjct: 73291 actttacagagtagagattggctgcgatgttatcagcagctttgtcgcgcacccaggtct 73350

                                                                         
Query: 331   tgccgccattggttgttttcagcaggacgccgctcccaccggctgcccacgcctcatcct 390
             | |||||||| |||||||| |||||||| || || |||||||| ||||| || |||||||
Sbjct: 73351 tcccgccatttgttgtttttagcaggacaccacttccaccggcggcccatgcttcatcct 73410



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 206   tcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaaccttggttgtcccc 265
             ||||||||| ||||| |||||||||||||||||||| |||||  | |||| |||||| ||
Sbjct: 73102 tcagccaacatatcgaagcaagacgccgtcgttcccaagcacgtatcctttgttgtcacc 73161

                    
Query: 266   aatgaac 272
             || ||||
Sbjct: 73162 aaggaac 73168

>gb|BT013854.1| Lycopersicon esculentum clone 132814F, mRNA sequence
          Length = 1511

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                        
Query: 366  ccaccggctgcccacgcctcatcctttgagcggtagcccacgtccagaattccaaacccc 425
            ||||| || ||||| |||||||||| ||| |||||||| || || ||||| ||||| || 
Sbjct: 1092 ccaccagcagcccaggcctcatcctgtgaacggtagccaacatcaagaatgccaaaacca 1033

                                         
Query: 426  cggctttgtaccgacgcttcctcaaagtc 454
            ||||||||||| ||  |||| ||||||||
Sbjct: 1032 cggctttgtactgaaacttcttcaaagtc 1004

>ref|NM_122218.2| Arabidopsis thaliana HCF136 AT5G23120 (HCF136) mRNA, complete cds
          Length = 1410

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 204  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1247 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1196

>dbj|AK221097.1| Arabidopsis thaliana mRNA for photosystem II stability/assembly
           factor HCF136, partial cds, clone: RAFL22-84-H16
          Length = 370

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 204 cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
           ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 219 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 168

>gb|AY045691.1| Arabidopsis thaliana AT5g23120/MYJ24_11 mRNA, complete cds
          Length = 1386

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 204  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1245 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1194

>emb|BX830635.1|CNS0A01H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB95ZC08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1343

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 204  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1244 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1193

>dbj|AB006708.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYJ24
          Length = 78844

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 204   cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
             ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 70438 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 70387

>emb|Y15628.1|ATHCF136 Arabidopsis thaliana mRNA for nuclear protein HCF136
          Length = 1404

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 204  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1243 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1192

>gb|BT004549.1| Arabidopsis thaliana At5g23120/MYJ24_11 gene, complete cds
          Length = 1212

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 206  tcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
            ||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1212 tcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1163

>emb|BX830603.1|CNS0A066 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB93ZE05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 306

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 204 cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 255
           ||||||||||| |||||||||||||| || ||||| |  |||||||| ||||
Sbjct: 173 cttcagccaacatatcggagcaagactccatcgttgcgaagcacaaatcctt 122

>gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, complete sequence
          Length = 187098

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    cagtaaaagacaggtaagatt 87
             |||||||||||||||||||||
Sbjct: 41175 cagtaaaagacaggtaagatt 41195

>gb|AC091609.2| Homo sapiens chromosome 1 clone RP11-109I2, complete sequence
          Length = 183521

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      gtgctcacttagtactgtacc 26
              |||||||||||||||||||||
Sbjct: 149854 gtgctcacttagtactgtacc 149874

>gb|AC131303.8| Mus musculus chromosome 1, clone RP24-119O19, complete sequence
          Length = 187110

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tatgcctctgaatatttgaa 47
             ||||||||||||||||||||
Sbjct: 68593 tatgcctctgaatatttgaa 68612

>gb|AC131998.9| Mus musculus chromosome 1, clone RP24-164G9, complete sequence
          Length = 152462

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    tgtgtgtgctcacttagtac 20
            ||||||||||||||||||||
Sbjct: 2414 tgtgtgtgctcacttagtac 2433

>gb|AC144383.2| Pan troglodytes BAC clone CH251-321N7 from X, complete sequence
          Length = 149315

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    acaggtaagatttacactctcttg 99
             |||||||| |||||||||||||||
Sbjct: 81581 acaggtaacatttacactctcttg 81558

>gb|AC144776.2| Mus musculus BAC clone RP23-357B5 from chromosome 16, complete sequence
          Length = 190860

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   gcttcctcaaagtcttcaac 460
             ||||||||||||||||||||
Sbjct: 52782 gcttcctcaaagtcttcaac 52763

>emb|BX901914.13| Zebrafish DNA sequence from clone DKEY-27F18 in linkage group 4,
             complete sequence
          Length = 149383

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aatcagcagcctttcacatg 140
             ||||||||||||||||||||
Sbjct: 16886 aatcagcagcctttcacatg 16867

>gb|AC123556.4| Mus musculus BAC clone RP23-176M9 from 1, complete sequence
          Length = 198900

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tatgcctctgaatatttgaa 47
             ||||||||||||||||||||
Sbjct: 53236 tatgcctctgaatatttgaa 53217

>emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in linkage group 4
             Contains the gene for a novel protein similar to
             vertebrate TAFA protein 5 (TAFA5) and a CpG island,
             complete sequence
          Length = 174359

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aatcagcagcctttcacatg 140
             ||||||||||||||||||||
Sbjct: 91109 aatcagcagcctttcacatg 91128

>gb|AC157924.6| Mus musculus chromosome 1, clone RP23-18J18, complete sequence
          Length = 206156

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tgtgtgtgctcacttagtac 20
              ||||||||||||||||||||
Sbjct: 100669 tgtgtgtgctcacttagtac 100650

>gb|AC154448.2| Mus musculus BAC clone RP23-185F24 from chromosome 16, complete
             sequence
          Length = 203269

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    aaataacagtaaaagacagg 80
             ||||||||||||||||||||
Sbjct: 89749 aaataacagtaaaagacagg 89768

>gb|AC154421.2| Mus musculus BAC clone RP24-217C15 from 16, complete sequence
          Length = 188761

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     aaataacagtaaaagacagg 80
              ||||||||||||||||||||
Sbjct: 150762 aaataacagtaaaagacagg 150781

>gb|AC107869.15| Mus musculus chromosome 1, clone RP23-418L6, complete sequence
          Length = 182061

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tgtgtgtgctcacttagtac 20
              ||||||||||||||||||||
Sbjct: 120022 tgtgtgtgctcacttagtac 120003


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,446,485
Number of Sequences: 3902068
Number of extensions: 3446485
Number of successful extensions: 60137
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60089
Number of HSP's gapped (non-prelim): 48
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)