Clone Name | rbah63k24 |
---|---|
Clone Library Name | barley_pub |
>emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue Length = 2682 Score = 712 bits (359), Expect = 0.0 Identities = 380/387 (98%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2371 acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 2312 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2311 aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 2252 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 2251 ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctcc 2192 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2191 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 2132 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2131 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccatcca 2072 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2071 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 2012 Query: 607 tcaatgccctccgtgtccagggccttc 633 ||||||||||||||||||||||||||| Sbjct: 2011 tcaatgccctccgtgtccagggccttc 1985 Score = 232 bits (117), Expect = 1e-57 Identities = 185/204 (90%), Gaps = 14/204 (6%) Strand = Plus / Minus Query: 1 ttacacggacaaaacccc--gtat-acgatcgatgattaatcgtcttccgcgcggtaaaa 57 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 2619 ttacacggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggtaaaa 2560 Query: 58 atggacgtccctcaaaaccatcacatttccagtccaacacttctttct-----aatgaga 112 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | Sbjct: 2559 atggacgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatgaaa 2500 Query: 113 gctaaatgggcggggcgacatgagcaaactacagctcgtccttgtcgtactgctcgtgct 172 ||||||| |||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct: 2499 gctaaat-----gggcgatatgagc-aactacagctcgtccttgtcgtactgctcgtgtt 2446 Query: 173 caggctcctccgcctcctgcttgg 196 | |||||||||||||||||||||| Sbjct: 2445 ccggctcctccgcctcctgcttgg 2422
>gb|AY103537.1| Zea mays PCO098403 mRNA sequence Length = 2806 Score = 496 bits (250), Expect = e-137 Identities = 334/362 (92%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct: 2402 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 2343 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 2342 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 2283 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||||| ||||||| || |||||||||| |||||||| ||||||||| Sbjct: 2282 ctcgccgtctgcttcagctcctcgctctcattgtcctgggcgaccttgtcgcggagctcc 2223 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2222 ttgatgatggggtgcctggggttgatctccagcaccctcttgccgcgcatgtacgcctgc 2163 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 2162 ttgctcgagtccgacagggtctgcgcctgcatgatcttctccatgttggcgctccacccg 2103 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||||||||| || || |||||||||| |||||||||||||||||||||||| ||| Sbjct: 2102 tacttggaggtgacgacgacgcagggggtgtcgtgcagccggttgctgatcttcaccgag 2043 Query: 607 tc 608 || Sbjct: 2042 tc 2041 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 actacagctcgtccttgtcg 159 |||||||||||||||||||| Sbjct: 2503 actacagctcgtccttgtcg 2484
>gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence Length = 1546 Score = 488 bits (246), Expect = e-134 Identities = 333/362 (91%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 |||| |||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 1246 acggtcgcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcg 1187 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1186 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 1127 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 |||||||| |||||||| ||||||| ||| |||||||||| |||||||| ||||||||| Sbjct: 1126 ctcgccgtgtgcttcagctcctcgctctcgttgtcctgggcgaccttgtcgcggagctcc 1067 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1066 ttgatgatggggtgcctggggttgatctcgagcaccctcttgccgcgcatgtacgcctgc 1007 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 1006 ttgctcgagtccgacagggtctgcgcctgcatgatcttctccatgttggcgctccacccg 947 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 ||||||||||||||||| || |||||||||| |||||||||||||||||||||||| ||| Sbjct: 946 tacttggaggtgaccacgacgcagggggtgtcgtgcagccggttgctgatcttcaccgag 887 Query: 607 tc 608 || Sbjct: 886 tc 885
>gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence Length = 1544 Score = 488 bits (246), Expect = e-134 Identities = 333/362 (91%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 |||| |||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 1232 acggtcgcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcg 1173 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1172 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 1113 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 |||||||| |||||||| ||||||| ||| |||||||||| |||||||| ||||||||| Sbjct: 1112 ctcgccgtgtgcttcagctcctcgctctcgttgtcctgggcgaccttgtcgcggagctcc 1053 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1052 ttgatgatggggtgcctggggttgatctcgagcaccctcttgccgcgcatgtacgcctgc 993 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 992 ttgctcgagtccgacagggtctgcgcctgcatgatcttctccatgttggcgctccacccg 933 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 ||||||||||||||||| || |||||||||| |||||||||||||||||||||||| ||| Sbjct: 932 tacttggaggtgaccacgacgcagggggtgtcgtgcagccggttgctgatcttcaccgag 873 Query: 607 tc 608 || Sbjct: 872 tc 871
>gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence Length = 2511 Score = 474 bits (239), Expect = e-130 Identities = 350/387 (90%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct: 2172 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 2113 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 || ||||||||||| || ||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 2112 aactccttggggtcggggagggtgaacccgctctccatcagggccgtctggtacaccagc 2053 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 2052 ctcgccgtctgcttcagctcctcgctctcgctgtcctgggcgaccttgtcgcggagctcc 1993 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1992 ttgatgatggggtgcctggggttgatctccagcaccctcttgccgcgcatgtacgcctgc 1933 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 1932 ttgctcgagtccgacagcgtctgcgcctgcatgatcttctccatgttggcgctccacccg 1873 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||||||||| || || ||||||||| |||||||||| |||||| |||||| ||| Sbjct: 1872 tacttggaggtgacgacgacggagggggtgtcgtgcagccggctgctgaccttcaccgag 1813 Query: 607 tcaatgccctccgtgtccagggccttc 633 || | || ||| | |||||||||||| Sbjct: 1812 tccacgctctcgctctccagggccttc 1786
>gb|BT016887.1| Zea mays clone Contig720 mRNA sequence Length = 719 Score = 472 bits (238), Expect = e-130 Identities = 331/362 (91%) Strand = Plus / Plus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct: 339 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 398 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 399 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 458 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 459 ctcgccgtctgcttcagctcctcgctctcgctgtcctgggcgaccttgtcgcggagctcc 518 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 519 ttgatgatggggtgcctggggttgatctccaccaccctcttgccgcgcatgtacgcctgc 578 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 579 ttgctcgagtccgacagcgtctgcgcctgcatgatcttctccatgttggcgctccacccg 638 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||||||||| || || ||||||||| |||||||||| |||||| |||||| ||| Sbjct: 639 tacttggaggtgacgacgacggagggggtgtcgtgcagccggctgctgaccttcaccgag 698 Query: 607 tc 608 || Sbjct: 699 tc 700
>dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full insert sequence Length = 2708 Score = 458 bits (231), Expect = e-125 Identities = 348/387 (89%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 2416 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 2357 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 2356 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 2297 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||| || |||||| |||||||||||||| |||||||||||||| ||| Sbjct: 2296 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttcc 2237 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 2236 ttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctgc 2177 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||| || ||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 2176 ttgctggcatccgagagggtctgtgactgcatgatcttctccatgttggcgctccacccg 2117 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||| || |||||||| |||||||||| | ||||||||||||||||||||| ||| Sbjct: 2116 tacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccgag 2057 Query: 607 tcaatgccctccgtgtccagggccttc 633 || | || ||| ||||| || |||||| Sbjct: 2056 tccacgctctcggtgtcaagagccttc 2030 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 2608 aaaaatggacgtccctcgaaaccatcacattt 2577
>dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G02, full insert sequence Length = 2026 Score = 458 bits (231), Expect = e-125 Identities = 348/387 (89%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 1738 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 1679 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 1678 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 1619 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||| || |||||| |||||||||||||| |||||||||||||| ||| Sbjct: 1618 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttcc 1559 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1558 ttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctgc 1499 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||| || ||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 1498 ttgctggcatccgagagggtctgtgactgcatgatcttctccatgttggcgctccacccg 1439 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||| || |||||||| |||||||||| | ||||||||||||||||||||| ||| Sbjct: 1438 tacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccgag 1379 Query: 607 tcaatgccctccgtgtccagggccttc 633 || | || ||| ||||| || |||||| Sbjct: 1378 tccacgctctcggtgtcaagagccttc 1352 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 1930 aaaaatggacgtccctcgaaaccatcacattt 1899
>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full insert sequence Length = 1944 Score = 450 bits (227), Expect = e-123 Identities = 347/387 (89%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 1656 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 1597 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 1596 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 1537 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||| || |||||| |||||||||||||| |||||||||||||| ||| Sbjct: 1536 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttcc 1477 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1476 ttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctgc 1417 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||| || ||||| |||||||||| |||||||||||||||| |||||| ||||||||| Sbjct: 1416 ttgctggcatccgagagggtctgtgactgcatgatcttctccgtgttggcgctccacccg 1357 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||| || |||||||| |||||||||| | ||||||||||||||||||||| ||| Sbjct: 1356 tacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccgag 1297 Query: 607 tcaatgccctccgtgtccagggccttc 633 || | || ||| ||||| || |||||| Sbjct: 1296 tccacgctctcggtgtcaagagccttc 1270 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 1848 aaaaatggacgtccctcgaaaccatcacattt 1817
>dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 90, complete cds Length = 2731 Score = 450 bits (227), Expect = e-123 Identities = 347/387 (89%) Strand = Plus / Minus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| | || Sbjct: 2410 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctgaaggcg 2351 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 2350 aagtccttgggatcagggaggttgaagccgctctccatgagggccgtctggtacaccagc 2291 Query: 367 ctcgccgtctgcttcaggccctcgctatcgctgtcctgggcaaccttgtcacggagctcc 426 ||||||||||||||| || |||||| |||||||||||||| |||||||||||||| ||| Sbjct: 2290 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttcc 2231 Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 2230 ttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctgc 2171 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccaccca 546 ||||| || ||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 2170 ttgctggcatccgagagggtctgtgactgcatgatcttctccatgttggcgctccacccg 2111 Query: 547 tacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagag 606 |||||||| || |||||||| |||||||||| | ||||||||||||||||||||| ||| Sbjct: 2110 tacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccgag 2051 Query: 607 tcaatgccctccgtgtccagggccttc 633 || | || ||| ||||| || |||||| Sbjct: 2050 tccacgctctcggtgtcaagagccttc 2024 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 2602 aaaaatggacgtccctcgaaaccatcacattt 2571
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence Length = 143507 Score = 285 bits (144), Expect = 9e-74 Identities = 216/240 (90%) Strand = Plus / Plus Query: 394 tcgctgtcctgggcaaccttgtcacggagctccttgatgatggggtgccgggggttgatc 453 |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 9854 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 9913 Query: 454 tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 513 || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| | Sbjct: 9914 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 9973 Query: 514 tgcatgatcttctccatgttggagctccacccatacttggaggtgaccaccacacagggg 573 |||||||||||||||||||||| ||||||||| |||||||| || |||||||| |||||| Sbjct: 9974 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 10033 Query: 574 gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 633 |||| | ||||||||||||||||||||| ||||| | || ||| ||||| || |||||| Sbjct: 10034 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 10093 Score = 178 bits (90), Expect = 1e-41 Identities = 132/146 (90%) Strand = Plus / Plus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 9601 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 9660 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 9661 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 9720 Query: 367 ctcgccgtctgcttcaggccctcgct 392 ||||||||||||||| || |||||| Sbjct: 9721 ttcgccgtctgcttcaagctctcgct 9746 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 9409 aaaaatggacgtccctcgaaaccatcacattt 9440
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 285 bits (144), Expect = 9e-74 Identities = 216/240 (90%) Strand = Plus / Plus Query: 394 tcgctgtcctgggcaaccttgtcacggagctccttgatgatggggtgccgggggttgatc 453 |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 29929148 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 29929207 Query: 454 tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 513 || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| | Sbjct: 29929208 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 29929267 Query: 514 tgcatgatcttctccatgttggagctccacccatacttggaggtgaccaccacacagggg 573 |||||||||||||||||||||| ||||||||| |||||||| || |||||||| |||||| Sbjct: 29929268 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 29929327 Query: 574 gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 633 |||| | ||||||||||||||||||||| ||||| | || ||| ||||| || |||||| Sbjct: 29929328 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 29929387 Score = 178 bits (90), Expect = 1e-41 Identities = 132/146 (90%) Strand = Plus / Plus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 29928895 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 29928954 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 29928955 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 29929014 Query: 367 ctcgccgtctgcttcaggccctcgct 392 ||||||||||||||| || |||||| Sbjct: 29929015 ttcgccgtctgcttcaagctctcgct 29929040 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 29928703 aaaaatggacgtccctcgaaaccatcacattt 29928734
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541C02 Length = 150660 Score = 285 bits (144), Expect = 9e-74 Identities = 216/240 (90%) Strand = Plus / Plus Query: 394 tcgctgtcctgggcaaccttgtcacggagctccttgatgatggggtgccgggggttgatc 453 |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 5296 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 5355 Query: 454 tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 513 || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| | Sbjct: 5356 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 5415 Query: 514 tgcatgatcttctccatgttggagctccacccatacttggaggtgaccaccacacagggg 573 |||||||||||||||||||||| ||||||||| |||||||| || |||||||| |||||| Sbjct: 5416 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 5475 Query: 574 gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 633 |||| | ||||||||||||||||||||| ||||| | || ||| ||||| || |||||| Sbjct: 5476 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 5535 Score = 178 bits (90), Expect = 1e-41 Identities = 132/146 (90%) Strand = Plus / Plus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 5043 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 5102 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 5103 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 5162 Query: 367 ctcgccgtctgcttcaggccctcgct 392 ||||||||||||||| || |||||| Sbjct: 5163 ttcgccgtctgcttcaagctctcgct 5188 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 4851 aaaaatggacgtccctcgaaaccatcacattt 4882
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481E08 Length = 171965 Score = 285 bits (144), Expect = 9e-74 Identities = 216/240 (90%) Strand = Plus / Plus Query: 394 tcgctgtcctgggcaaccttgtcacggagctccttgatgatggggtgccgggggttgatc 453 |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 124661 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 124720 Query: 454 tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 513 || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| | Sbjct: 124721 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 124780 Query: 514 tgcatgatcttctccatgttggagctccacccatacttggaggtgaccaccacacagggg 573 |||||||||||||||||||||| ||||||||| |||||||| || |||||||| |||||| Sbjct: 124781 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 124840 Query: 574 gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 633 |||| | ||||||||||||||||||||| ||||| | || ||| ||||| || |||||| Sbjct: 124841 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 124900 Score = 178 bits (90), Expect = 1e-41 Identities = 132/146 (90%) Strand = Plus / Plus Query: 247 acggccgcgtccgggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 306 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct: 124408 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 124467 Query: 307 aagtccttggggtcaggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 366 ||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 124468 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 124527 Query: 367 ctcgccgtctgcttcaggccctcgct 392 ||||||||||||||| || |||||| Sbjct: 124528 ttcgccgtctgcttcaagctctcgct 124553 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 54 aaaaatggacgtccctcaaaaccatcacattt 85 ||||||||||||||||| |||||||||||||| Sbjct: 124216 aaaaatggacgtccctcgaaaccatcacattt 124247
>gb|AF544993.1| Xerophyta viscosa Grp94 mRNA, complete cds Length = 2947 Score = 87.7 bits (44), Expect = 4e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 445 gggttgatctccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagg 504 ||||| ||||| || |||||||| ||||||||||| ||||||||||| || || || || Sbjct: 2135 gggttaatctcgagcaccctcttcccgcgcatgtatgcctgcttgctggcatcggaaaga 2076 Query: 505 gtctgtgcctgcatgatcttctccatgttggagctccacccatacttggaggtgaccacc 564 ||||| | |||||| |||||||||||||| | ||||| ||||| || || ||||| || Sbjct: 2075 gtctgagactgcataatcttctccatgtttgcactccaaccatatttcgatgtgacaaca 2016 Query: 565 acacagggggtgttgtgcagccggttgctgatcttcacagagtc 608 || || || ||||| | || ||||||||| |||||||| ||||| Sbjct: 2015 acgcaaggagtgttatccaaccggttgctaatcttcacggagtc 1972
>ref|NM_118552.2| Arabidopsis thaliana SHD (SHEPHERD); ATP binding / unfolded protein binding AT4G24190 (SHD) transcript variant AT4G24190.1 mRNA, complete cds Length = 2707 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 2207 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2148 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 2147 ttattagcatccgagagagtttgggactgcatgatcctctccat 2104
>ref|NM_202877.1| Arabidopsis thaliana SHD (SHEPHERD); ATP binding / unfolded protein binding AT4G24190 (SHD) transcript variant AT4G24190.2 mRNA, complete cds Length = 2707 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 2207 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2148 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 2147 ttattagcatccgagagagtttgggactgcatgatcctctccat 2104
>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project) Length = 77567 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 76717 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 76776 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 76777 ttattagcatccgagagagtttgggactgcatgatcctctccat 76820
>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project) Length = 108459 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 3355 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 3414 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 3415 ttattagcatccgagagagtttgggactgcatgatcctctccat 3458
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61 Length = 198402 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 20012 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 20071 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 20072 ttattagcatccgagagagtttgggactgcatgatcctctccat 20115
>gb|AY039895.1| Arabidopsis thaliana AT4g24190/T22A6_20 mRNA, complete cds Length = 2702 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 2201 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2142 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 2141 ttattagcatccgagagagtttgggactgcatgatcctctccat 2098
>gb|BT004527.1| Arabidopsis thaliana At4g24190/T22A6_20 gene, complete cds Length = 2472 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 2153 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2094 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 2093 ttattagcatccgagagagtttgggactgcatgatcctctccat 2050
>dbj|AB064528.1| Arabidopsis thaliana SHD mRNA for SHEPHERD, complete cds Length = 2674 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 2193 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2134 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 2133 ttattagcatccgagagagtttgggactgcatgatcctctccat 2090
>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence Length = 116156 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 851 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 792 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 791 ttattagcatccgagagagtttgggactgcatgatcctctccat 748
>dbj|AB064527.1| Arabidopsis thaliana SHD gene for SHEPHERD, complete cds Length = 6679 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 427 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 486 |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 5136 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 5077 Query: 487 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccat 530 || | || ||||| || || || | |||||||||| ||||||| Sbjct: 5076 ttattagcatccgagagagtttgggactgcatgatcctctccat 5033
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 418 cggagctccttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatg 477 ||||| ||||||||||| ||||| | || |||||||| || |||||||||||||||||| Sbjct: 80122 cggagttccttgatgatagggtgtctaggattgatctcaagaaccctcttgccgcgcatg 80063 Query: 478 tacgcctgctt 488 || || ||||| Sbjct: 80062 tatgcttgctt 80052
>gb|AY103538.1| Zea mays PCO150589 mRNA sequence Length = 2534 Score = 54.0 bits (27), Expect = 6e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 488 tgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccacccat 547 |||||| |||| ||||| |||||||| ||||||| |||||||||||| | |||| |||| Sbjct: 1968 tgctcgagtccctcagggcctgtgccttcatgatcctctccatgttggcggtccagccat 1909 Query: 548 act 550 ||| Sbjct: 1908 act 1906
>gb|DQ084238.1| Leishmania donovani chagasi clone LCPE01EX020024H11.g 83 kDa heat shock protein (hsp83) mRNA, partial cds Length = 564 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctcca 457 |||||||||||||||||||| | |||||||| ||||| Sbjct: 136 agctccttgatgatggggtgtctggggttgagctcca 100
>gb|DQ084237.1| Leishmania donovani chagasi clone LCPE01EX020050A04.g 83 kDa heat shock protein (hsp83) mRNA, partial cds Length = 597 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctcca 457 |||||||||||||||||||| | |||||||| ||||| Sbjct: 513 agctccttgatgatggggtgtctggggttgagctcca 477
>emb|X87770.2|LIHSP83GN Leishmania infantum hsp83-1 gene for heat shock protein 83-1 and hsp83-2 gene for heat shock protein 83-2 Length = 3744 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctcca 457 |||||||||||||||||||| | |||||||| ||||| Sbjct: 1914 agctccttgatgatggggtgtctggggttgagctcca 1878
>gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2553 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Minus Query: 511 gcctgcatgatcttctccatgttggagctccacccatact 550 |||| ||||||| |||||||||||| | |||||||||||| Sbjct: 1833 gccttcatgatcctctccatgttggcggtccacccatact 1794
>gb|AF135117.1|AF135117 Salmo salar heat shock protein hsp90 beta (hsp90 beta) mRNA, complete cds Length = 2625 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 501 cagggtctgtgcctgcatgatcttctccatgttgg 535 ||||| |||||||| ||||||| |||||||||||| Sbjct: 1909 cagggcctgtgccttcatgatcctctccatgttgg 1875
>gb|AF384808.1| Cryptococcus neoformans var. grubii heat-shock protein 90 gene, partial cds Length = 2391 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 420 gagctccttgatgatggggtgccgggggttgatctcca 457 ||||||||||||||||||||| |||||||| ||||| Sbjct: 2154 gagctccttgatgatggggtgagaggggttgagctcca 2117
>gb|AY118578.1| Drosophila melanogaster LD43460 full insert cDNA Length = 1210 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctccag 458 |||| |||||||||||||||| |||||||||||||| Sbjct: 910 agcttcttgatgatggggtgctttgggttgatctccag 873
>ref|NM_058091.3| Drosophila melanogaster Trap1 CG3152-RA (Trap1), mRNA Length = 2478 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctccag 458 |||| |||||||||||||||| |||||||||||||| Sbjct: 2197 agcttcttgatgatggggtgctttgggttgatctccag 2160
>gb|AY122624.1| Dimastigella trypaniformis strain Ulm heat shock protein 90 (HSP-90) gene, partial cds Length = 1873 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctccag 458 |||||||||||||||| ||| | |||||||||||||| Sbjct: 1740 agctccttgatgatggcgtggctcgggttgatctccag 1703
>gb|AF115775.2|AF115775 Drosophila melanogaster Hsp90-related protein TRAP1 mRNA, complete cds Length = 2162 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctccag 458 |||| |||||||||||||||| |||||||||||||| Sbjct: 2000 agcttcttgatgatggggtgctttgggttgatctccag 1963
>gb|BT001316.1| Drosophila melanogaster AT15050 full insert cDNA Length = 2475 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctccag 458 |||| |||||||||||||||| |||||||||||||| Sbjct: 2193 agcttcttgatgatggggtgctttgggttgatctccag 2156
>gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence Length = 2179 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 507 ctgtgcctgcatgatcttctccatgttgg 535 |||||||| ||||||| |||||||||||| Sbjct: 1704 ctgtgccttcatgatcctctccatgttgg 1676
>emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein Length = 2378 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 511 gcctgcatgatcttctccatgttggagctccacccat 547 |||| ||||||| |||||||||||| | ||||||||| Sbjct: 1845 gccttcatgatcctctccatgttgggggtccacccat 1809
>ref|NR_002839.1| Mus musculus distal-less homeobox 6, antisense (Dlx6as) on chromosome 6 Length = 1351 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 ggctcctccgcctcctgcttg 195 ||||||||||||||||||||| Sbjct: 1084 ggctcctccgcctcctgcttg 1064
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 411 cttgtcacggagctccttgatgatg 435 ||||||||||||||| ||||||||| Sbjct: 1185035 cttgtcacggagctctttgatgatg 1185011
>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence Length = 183177 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 aaccatcacatttccagtcca 93 ||||||||||||||||||||| Sbjct: 132650 aaccatcacatttccagtcca 132630
>gb|AY109427.1| Zea mays CL1264_2 mRNA sequence Length = 1267 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 507 ctgtgcctgcatgatcttctccatgttgg 535 |||||||| ||||||| |||||||||||| Sbjct: 687 ctgtgccttcatgatcctctccatgttgg 659
>emb|CT573078.1| Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE Length = 165916 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 507 ctgtgcctgcatgatcttctccatgttgg 535 |||||||| ||||||| |||||||||||| Sbjct: 33488 ctgtgccttcatgatcctctccatgttgg 33460 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 507 ctgtgcctgcatgatcttctccatgttgg 535 |||||||| ||||||| |||||||||||| Sbjct: 22847 ctgtgccttcatgatcctctccatgttgg 22819
>gb|AF022079.1|AF022079 Mus musculus antisense Dlx-6 mRNA, partial sequence Length = 1351 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 ggctcctccgcctcctgcttg 195 ||||||||||||||||||||| Sbjct: 1084 ggctcctccgcctcctgcttg 1064
>gb|AC132137.3| Mus musculus BAC clone RP23-153E2 from 3, complete sequence Length = 196413 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 tctttctaatgagagctaaat 119 ||||||||||||||||||||| Sbjct: 30848 tctttctaatgagagctaaat 30828
>gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complete sequence Length = 211740 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ggctcctccgcctcctgcttg 195 ||||||||||||||||||||| Sbjct: 107299 ggctcctccgcctcctgcttg 107319
>gb|M73492.1|LEIHSP90 Leishmania donovani heat shock protein 90 mRNA, 3' end Length = 2197 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 425 ccttgatgatggggtgccgggggttgatctcca 457 |||||||||||||||| | |||||||| ||||| Sbjct: 1105 ccttgatgatggggtgtctggggttgagctcca 1073
>gb|M92926.1|LEIHSP01 Leishmania amazonensis heat shock protein 83 gene, complete cds Length = 2106 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtgccgggggttgatctcca 457 |||||||||||||||||||| |||||||| ||||| Sbjct: 1853 agctccttgatgatggggtgtttggggttgagctcca 1817
>gb|BC041635.1| Homo sapiens SLIT-ROBO Rho GTPase activating protein 2, mRNA (cDNA clone IMAGE:4862729) Length = 2505 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 cctcgccgtctgcttcaggccctcgcta 393 ||||||| |||||||| ||||||||||| Sbjct: 760 cctcgccatctgcttcgggccctcgcta 787
>ref|XM_514148.1| PREDICTED: Pan troglodytes formin binding protein 2 (LOC457680), mRNA Length = 5062 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 cctcgccgtctgcttcaggccctcgcta 393 ||||||| |||||||| ||||||||||| Sbjct: 573 cctcgccatctgcttcgggccctcgcta 600
>ref|NM_015326.1| Homo sapiens SLIT-ROBO Rho GTPase activating protein 2 (SRGAP2), mRNA Length = 6305 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 cctcgccgtctgcttcaggccctcgcta 393 ||||||| |||||||| ||||||||||| Sbjct: 1989 cctcgccatctgcttcgggccctcgcta 2016
>gb|AC112970.18| Mus musculus chromosome 17, clone RP24-443D19, complete sequence Length = 172747 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 119070 cctccgtgtccagggccttc 119089
>gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, complete sequence Length = 173643 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 154392 cctccgtgtccagggccttc 154411
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 ggaggtgaccaccacacagg 571 |||||||||||||||||||| Sbjct: 1304504 ggaggtgaccaccacacagg 1304485
>ref|NM_175934.2| Mus musculus protein phosphatase 1, regulatory subunit 10 (Ppp1r10), mRNA Length = 4203 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 2910 cctccgtgtccagggccttc 2891
>gb|AC123605.8| Mus musculus chromosome 5, clone RP24-176O2, complete sequence Length = 211657 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 60512 cctccgtgtccagggccttc 60531
>gb|AY391259.1| Perkinsus marinus heat shock protein 90 gene, partial cds Length = 1877 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 511 gcctgcatgatcttctccatgttggagctccacccatacttggaggtg 558 |||| ||||||| |||||||||||| | |||| || |||| ||||||| Sbjct: 1876 gccttcatgatcctctccatgttggcggtccagccgtactcggaggtg 1829
>gb|BC029765.1| Mus musculus protein phosphatase 1, regulatory subunit 10, mRNA (cDNA clone IMAGE:4950618), partial cds Length = 2917 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 1620 cctccgtgtccagggccttc 1601
>gb|BC052059.1| Mus musculus protein phosphatase 1, regulatory subunit 10, mRNA (cDNA clone MGC:62449 IMAGE:5702171), complete cds Length = 4240 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 2949 cctccgtgtccagggccttc 2930
>ref|XR_003657.1| PREDICTED: Mus musculus similar to vacuole Membrane Protein 1 (LOC633663), mRNA Length = 1375 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 698 cctccgtgtccagggccttc 679
>gb|BC024994.1| Mus musculus protein phosphatase 1, regulatory subunit 10, mRNA (cDNA clone IMAGE:5012018), with apparent retained intron Length = 1596 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 306 cctccgtgtccagggccttc 287
>emb|AL161736.33| Human DNA sequence from clone RP11-421E17 on chromosome 1 Contains the 3' end of the FNBP2 gene for formin binding protein 2 and a RAP1, GTP-GDP dissociation stimulator 1 (RAP1GDS1) pseudogene, complete sequence Length = 159474 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 cctcgccgtctgcttcaggccctcgcta 393 ||||||| |||||||| ||||||||||| Sbjct: 137242 cctcgccatctgcttcgggccctcgcta 137269
>emb|AJ504718.1|MMU504718 Mus musculus mRNA for protein phosphatase I (CAT53 gene) Length = 4203 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 2910 cctccgtgtccagggccttc 2891
>dbj|AK145485.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0004A05 product:protein phosphatase 1, regulatory subunit 10, full insert sequence Length = 3667 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 2390 cctccgtgtccagggccttc 2371
>ref|XM_936300.1| PREDICTED: Homo sapiens SLIT-ROBO Rho GTPase activating protein 2 (SRGAP2), mRNA Length = 4985 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 cctcgccgtctgcttcaggccctcgcta 393 ||||||| |||||||| ||||||||||| Sbjct: 630 cctcgccatctgcttcgggccctcgcta 657
>gb|AY942619.1| Leishmania braziliensis strain MHOM/PE/95/LQ2 heat shock protein (hsp-83) gene, complete cds Length = 3520 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 agctccttgatgatggggtg 440 |||||||||||||||||||| Sbjct: 2455 agctccttgatgatggggtg 2436
>gb|AF247812.1|AF247812 Rattus norvegicus transcription factor FKHR mRNA, partial cds Length = 1000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 atctccaggaccctcttgcc 470 |||||||||||||||||||| Sbjct: 336 atctccaggaccctcttgcc 317
>ref|XM_342244.2| PREDICTED: Rattus norvegicus forkhead box O1A (Foxo1a), mRNA Length = 4171 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 atctccaggaccctcttgcc 470 |||||||||||||||||||| Sbjct: 1259 atctccaggaccctcttgcc 1240
>gb|BC004771.1| Mus musculus protein phosphatase 1, regulatory subunit 10, mRNA (cDNA clone IMAGE:3157989), partial cds Length = 1658 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 379 cctccgtgtccagggccttc 360
>gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRNA, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 488 tgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttgg 535 |||||| |||| ||||| ||| |||| ||||||| |||||||||||| Sbjct: 1898 tgctcgtgtccctcagggcctgggccttcatgatcctctccatgttgg 1851
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ctcctccgcctcctgcttgg 196 |||||||||||||||||||| Sbjct: 2035901 ctcctccgcctcctgcttgg 2035920
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ctcctccgcctcctgcttgg 196 |||||||||||||||||||| Sbjct: 1682827 ctcctccgcctcctgcttgg 1682846
>emb|CR974451.9| Mouse DNA sequence from clone RP24-180B11 on chromosome 17, complete sequence Length = 188873 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 cctccgtgtccagggccttc 633 |||||||||||||||||||| Sbjct: 155143 cctccgtgtccagggccttc 155124
>dbj|AB007925.1| Homo sapiens mRNA for KIAA0456 protein, partial cds Length = 6305 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 cctcgccgtctgcttcaggccctcgcta 393 ||||||| |||||||| ||||||||||| Sbjct: 1989 cctcgccatctgcttcgggccctcgcta 2016
>dbj|D86216.1| Thermus aquaticus DNA for trehalose synthase, complete cds Length = 4219 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 ttgatctccaggaccctcttgccg 471 |||| ||||||||||||||||||| Sbjct: 485 ttgagctccaggaccctcttgccg 462 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,123,839 Number of Sequences: 3902068 Number of extensions: 4123839 Number of successful extensions: 93117 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92828 Number of HSP's gapped (non-prelim): 288 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)