ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63k15 |
|---|---|
| Clone Library Name | barley_pub |
>BRI1_ARATH (O22476) BRASSINOSTEROID INSENSITIVE 1 precursor (EC 2.7.11.1)| (AtBRI1) (Brassinosteroid LRR receptor kinase) Length = 1196 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -1 Query: 558 GIMLLEVFTXRRPTDAMFGGELTLRQWVHHAFPAELLCVADGQILQGCPSASCELADEFL 379 G++LLE+ T +RPTD+ G+ L WV + V D ++++ P+ E L Sbjct: 1073 GVVLLELLTGKRPTDSPDFGDNNLVGWVKQHAKLRISDVFDPELMKEDPALEIE-----L 1127 Query: 378 LPVFELGLLCSSDSPDERTMMSNVVVTLKKIKA 280 L ++ + C D R M V+ K+I+A Sbjct: 1128 LQHLKVAVACLDDRAWRRPTMVQVMAMFKEIQA 1160
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 40.4 bits (93), Expect = 0.003 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Frame = -1 Query: 558 GIMLLEVFTXRRPTDAMFGGELTLRQWVHHAFPAELLCVADGQILQGCPSASCELADEFL 379 G++LLE+ T ++PTD+ G + + +WV A C + I P + +E + Sbjct: 885 GVVLLELVTGKQPTDSELGDK-DMAKWVCTALDK---CGLEPVI---DPKLDLKFKEE-I 936 Query: 378 LPVFELGLLCSSDSPDERTMMSNVVVTLKKIKAQY---TKQTTKRS 250 V +GLLC+S P R M VV+ L+++ + T+KRS Sbjct: 937 SKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVPCSSPNTSKRS 982
>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Length = 1143 Score = 39.3 bits (90), Expect = 0.008 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%) Frame = -1 Query: 558 GIMLLEVFTXRRPTDAMFGGELTLRQWVH-HAFPAELLCVADGQILQGCPSASCELADEF 382 G+++LE+ + +RPTD G+ L W A + + V D +L+ S S + F Sbjct: 1030 GVVMLEILSGKRPTDKEEFGDTNLVGWSKMKAREGKHMEVIDEDLLKEGSSESLNEKEGF 1089 Query: 381 --------LLPVFELGLLCSSDSPDERTMMSNVVVTLKKIK 283 +L E+ L C D P +R M VV +L++++ Sbjct: 1090 EGGVIVKEMLRYLEIALRCVDDFPSKRPNMLQVVASLRELR 1130
>BRI1_LYCPE (Q8L899) Systemin receptor SR160 precursor (EC 2.7.11.1)| (Brassinosteroid LRR receptor kinase) Length = 1207 Score = 38.5 bits (88), Expect = 0.013 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -1 Query: 558 GIMLLEVFTXRRPTDAMFGGELTLRQWVHHAFPAELLCVADGQILQGCPSASCELADEFL 379 G++LLE+ T ++PTD+ G+ L WV ++ V D ++L+ S E L Sbjct: 1078 GVVLLELLTGKQPTDSADFGDNNLVGWVKLHAKGKITDVFDRELLKEDASIEIE-----L 1132 Query: 378 LPVFELGLLCSSDSPDERTMMSNVVVTLKKIKA 280 L ++ C D +R M V+ K+I+A Sbjct: 1133 LQHLKVACACLDDRHWKRPTMIQVMAMFKEIQA 1165
>BRI1_LYCES (Q8GUQ5) Brassinosteroid LRR receptor kinase precursor (EC 2.7.11.1)| (tBRI1) (Altered brassinolide sensitivity 1) (Systemin receptor SR160) Length = 1207 Score = 38.5 bits (88), Expect = 0.013 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -1 Query: 558 GIMLLEVFTXRRPTDAMFGGELTLRQWVHHAFPAELLCVADGQILQGCPSASCELADEFL 379 G++LLE+ T ++PTD+ G+ L WV ++ V D ++L+ S E L Sbjct: 1078 GVVLLELLTGKQPTDSADFGDNNLVGWVKLHAKGKITDVFDRELLKEDASIEIE-----L 1132 Query: 378 LPVFELGLLCSSDSPDERTMMSNVVVTLKKIKA 280 L ++ C D +R M V+ K+I+A Sbjct: 1133 LQHLKVACACLDDRHWKRPTMIQVMAMFKEIQA 1165
>RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2.7.11.1)| Length = 1109 Score = 36.6 bits (83), Expect = 0.049 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = -1 Query: 558 GIMLLEVFTXRRPTDAMFGGELTLRQWVHHAF--PAELLCVADGQILQGCPSASCELADE 385 G++LLE+ T ++ D F GE + WV + E+ + D +L +S E Sbjct: 1006 GVVLLELITRKKALDPSFNGETDIVGWVRSVWTQTGEIQKIVDPSLLDELIDSS---VME 1062 Query: 384 FLLPVFELGLLCSSDSPDERTMMSNVVVTLKK 289 + L L C+ D+R M +VV L + Sbjct: 1063 QVTEALSLALRCAEKEVDKRPTMRDVVKQLTR 1094
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 35.0 bits (79), Expect = 0.14 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Frame = -1 Query: 558 GIMLLEVFTXRRPTD---AMFGGELTLRQWVHHAFPAELLCVADGQILQGCPSASCELAD 388 G+MLLE+ T +R D ++ L WV + L LQG D Sbjct: 479 GVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQG------NYKD 532 Query: 387 EFLLPVFELGLLCSSDSPDERTMMSNVVVTLK 292 E + + ++ LLC+ SP ER MS VV L+ Sbjct: 533 EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 564
>ATPA_MYCPU (Q98QB7) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1| sector alpha subunit) Length = 513 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 459 AELLCVADGQILQGCPSASCELADEFLLPVFELGLLCS-SDSPDERTMMSNVVVTLKKIK 283 + + + DGQI+ + E+ D+ +LP ++GL S + S + +S + + + KI Sbjct: 311 SNIASITDGQIV-----TNSEIKDQGILPAIDIGLSVSRTGSSVQSVSLSKIAIEISKIY 365 Query: 282 AQYTKQTTKRSN 247 ++Y KQ K S+ Sbjct: 366 SKY-KQNEKFSD 376
>VINC_MOUSE (Q64727) Vinculin (Metavinculin)| Length = 1065 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/83 (25%), Positives = 37/83 (44%) Frame = -1 Query: 408 ASCELADEFLLPVFELGLLCSSDSPDERTMMSNVVVTLKKIKAQYTKQTTKRSNGVAC*L 229 A C+ D+ + +L +SP R + S + +LK +KAQ + T+ + V Sbjct: 542 AKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKAQMQEAMTQEVSDVFS-- 599 Query: 228 ISLVPLVLSTGASGGQREAINNE 160 + P+ L A+ +A N E Sbjct: 600 DTTTPIKLLAVAATAPPDAPNRE 622
>NDST2_BOVIN (O97583) Bifunctional heparan sulfate| N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8) (Glucosaminyl N-deacetylase/N-sulfotransferase 2) (NDST-2) (CCL44) [Includes: Heparan sulfate N-deacetylase 2 (EC 3.-.-.-); Heparan sulfate N-sulfotransfera Length = 884 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = -1 Query: 489 LRQWVHHAFPAELLCVADGQILQGCPSASCELADEFL 379 L++W+ + +P+ L + DGQ L+ P+AS E+ +FL Sbjct: 761 LQRWLTY-YPSGQLLIVDGQELRTNPAASMEIIQKFL 796
>DCP2_ASHGO (Q75BK1) mRNA decapping enzyme 2 (EC 3.-.-.-)| Length = 880 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 369 ILVEEIHQPIHS*QKGSLVVSGHPQHTKAPQEMH 470 ++ ++I P S Q+G+ + PQHT++P +H Sbjct: 825 LVKQQISNPSQSLQQGTPLQQPQPQHTQSPSNLH 858
>MYO5B_RAT (P70569) Myosin-5B (Myosin Vb) (Myosin heavy chain myr 6)| Length = 1846 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 347 EQSKPSSNTGRRNSSANSQLAEGQPCSIWPSATHKSSAG 463 E S P++NT + SS+ + +P P+ HK S G Sbjct: 596 EDSVPATNTAKSRSSSKINVRSSRPLMKAPNKEHKKSVG 634
>CNG_ICTPU (P55934) Cyclic nucleotide-gated cation channel| Length = 682 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 549 LLEVFTXRRPTDAMFGGELTLRQWVH 472 +LE FT RRP + L+LR+W H Sbjct: 59 MLEAFTQRRPLARLVNLVLSLREWAH 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,029,532 Number of Sequences: 219361 Number of extensions: 1692095 Number of successful extensions: 4361 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4360 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
