ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63k10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPS2_ARATH (Q42484) Disease resistance protein RPS2 (Resistance ... 30 1.4
2RSP1_SCHPO (O13601) DnaJ-related protein rsp1 28 4.1
3RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA 28 5.4
4RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA 28 5.4
5KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC ... 28 7.0
6Y1684_METTH (O27719) Hypothetical protein MTH1684 28 7.0

>RPS2_ARATH (Q42484) Disease resistance protein RPS2 (Resistance to Pseudomonas|
           syringae protein 2)
          Length = 909

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 38  IQLHRAGHPRPDRRKEMKGM*NQQRLASCTNV-ANQRVSVSNPDASHHEQL 187
           I L + G PRPDR  + K M   + +A C N+ A  ++ V   +  H  +L
Sbjct: 268 IDLEKTGVPRPDRENKCKVMFTTRSIALCNNMGAEYKLRVEFLEKKHAWEL 318



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>RSP1_SCHPO (O13601) DnaJ-related protein rsp1|
          Length = 494

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 22  NNG*HNSITPRGAPKARQAERNERYVKSAEVSILY 126
           +NG  NS   + +P++  +  NER+  ++E SI++
Sbjct: 237 SNGVENSSITKSSPRSSSSSNNERFKDTSEESIIF 271



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>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 164 DASHHEQLEHPKHRSSNGSVHSNLVQW*SNASELQNSNMLELCL--NMAPCP 313
           D  HH   EH +++ ++   H+N ++   +  E+ N  +L   L   + PCP
Sbjct: 137 DHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCP 188



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>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 164 DASHHEQLEHPKHRSSNGSVHSNLVQW*SNASELQNSNMLELCL--NMAPCP 313
           D  HH   EH +++ ++   H+N ++   +  E+ N  +L   L   + PCP
Sbjct: 137 DHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCP 188



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>KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC 2.7.11.22)|
           (Cell division cycle 2-like)
          Length = 952

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 65  RPDRRKEMKGM*NQQRLASCTNVANQRVSV----SNPDASHHEQLEHPKHRS 208
           R DRR+   G   ++R    T+  N+   V     +P+  HH Q +H  HRS
Sbjct: 225 RSDRREG--GRKERERTVRSTHKQNRHDRVIELLDSPEQEHHHQHQHKSHRS 274



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>Y1684_METTH (O27719) Hypothetical protein MTH1684|
          Length = 431

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 207 DLCFGCSSCSW*LASG-FDTDT 145
           D CFGC  C+W   SG ++ DT
Sbjct: 369 DRCFGCGVCAWSCPSGAYEMDT 390


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,033,589
Number of Sequences: 219361
Number of extensions: 982922
Number of successful extensions: 1881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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