ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63k10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, com... 40 5.0
2gb|AC132935.7| Mus musculus chromosome 15, clone RP24-142P21, co... 40 5.0
3gb|AC142345.1| Pan troglodytes BAC clone RP43-1K4 from Y, comple... 40 5.0
4gb|AY813384.1| Schistosoma japonicum SJCHGC05070 protein mRNA, c... 40 5.0
5ref|XM_534354.2| PREDICTED: Canis familiaris similar to Secretog... 40 5.0
6emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 40 5.0
7gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, com... 40 5.0
8emb|BX546481.7| Zebrafish DNA sequence from clone DKEY-60J4 in l... 40 5.0
9dbj|BS000600.1| Pan troglodytes chromosome Y clone:PTB-253H05, c... 40 5.0
10dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, c... 40 5.0
11gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.0
12gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 40 5.0
13gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Canc... 40 5.0
14emb|AL929195.14| Zebrafish DNA sequence from clone CH211-149K12 ... 40 5.0
15emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in... 40 5.0
16dbj|BS000038.1| Pan troglodytes chromosome 22 clone:PTB-005J02, ... 40 5.0
17dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.0
18gb|AC171898.2| Capitella capitata clone JGIBGZA-37B13, complete ... 40 5.0
19gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, compl... 40 5.0
20dbj|AP000745.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.0

>gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, complete sequence
          Length = 198541

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      gatttttaacaatgaacaat 27
              ||||||||||||||||||||
Sbjct: 164390 gatttttaacaatgaacaat 164409



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>gb|AC132935.7| Mus musculus chromosome 15, clone RP24-142P21, complete sequence
          Length = 140484

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gatttttaacaatgaacaat 27
             ||||||||||||||||||||
Sbjct: 76119 gatttttaacaatgaacaat 76100



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>gb|AC142345.1| Pan troglodytes BAC clone RP43-1K4 from Y, complete sequence
          Length = 213921

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    gaaagaaatgaaaggtatgt 98
             ||||||||||||||||||||
Sbjct: 91943 gaaagaaatgaaaggtatgt 91962



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>gb|AY813384.1| Schistosoma japonicum SJCHGC05070 protein mRNA, complete cds
          Length = 885

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  gaaagaaatgaaaggtatgt 98
           ||||||||||||||||||||
Sbjct: 126 gaaagaaatgaaaggtatgt 107



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>ref|XM_534354.2| PREDICTED: Canis familiaris similar to Secretogranin-1 precursor
           (Secretogranin I) (SgI) (Chromogranin B) (CgB)
           (LOC477165), mRNA
          Length = 2429

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  ggggcacccaaggcccgaca 74
           ||||||||||||||||||||
Sbjct: 446 ggggcacccaaggcccgaca 465



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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 14      taacaatgaacaatggctaa 33
               ||||||||||||||||||||
Sbjct: 1748488 taacaatgaacaatggctaa 1748469



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>gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, complete sequence
          Length = 204574

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gatttttaacaatgaacaat 27
             ||||||||||||||||||||
Sbjct: 44943 gatttttaacaatgaacaat 44962



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>emb|BX546481.7| Zebrafish DNA sequence from clone DKEY-60J4 in linkage group 17,
             complete sequence
          Length = 103902

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ctgcattgatttttaacaat 20
             ||||||||||||||||||||
Sbjct: 72296 ctgcattgatttttaacaat 72277



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>dbj|BS000600.1| Pan troglodytes chromosome Y clone:PTB-253H05, complete sequences
          Length = 100704

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   gaaagaaatgaaaggtatgt 98
            ||||||||||||||||||||
Sbjct: 4807 gaaagaaatgaaaggtatgt 4788



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>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences
          Length = 161601

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     gaaagaaatgaaaggtatgt 98
              ||||||||||||||||||||
Sbjct: 159917 gaaagaaatgaaaggtatgt 159898



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 79       gaaagaaatgaaaggtatgt 98
                ||||||||||||||||||||
Sbjct: 15347967 gaaagaaatgaaaggtatgt 15347986



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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    gaacggttccgtgcattcga 230
              ||||||||||||||||||||
Sbjct: 154073 gaacggttccgtgcattcga 154092



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>gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 183526

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     agaaatgaaaggtatgtgaa 101
              ||||||||||||||||||||
Sbjct: 169853 agaaatgaaaggtatgtgaa 169834



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>emb|AL929195.14| Zebrafish DNA sequence from clone CH211-149K12 in linkage group 16,
             complete sequence
          Length = 139679

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ctgcattgatttttaacaat 20
             ||||||||||||||||||||
Sbjct: 96602 ctgcattgatttttaacaat 96583



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>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22,
            complete sequence
          Length = 165445

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tgaactacaaaattctaata 278
            ||||||||||||||||||||
Sbjct: 5291 tgaactacaaaattctaata 5272



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>dbj|BS000038.1| Pan troglodytes chromosome 22 clone:PTB-005J02, map 22, complete
              sequences
          Length = 142533

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aaatgaaaggtatgtgaaat 103
              ||||||||||||||||||||
Sbjct: 136067 aaatgaaaggtatgtgaaat 136086



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>dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, section 15/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aaatgaaaggtatgtgaaat 103
              ||||||||||||||||||||
Sbjct: 149032 aaatgaaaggtatgtgaaat 149051



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>gb|AC171898.2| Capitella capitata clone JGIBGZA-37B13, complete sequence
          Length = 32964

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ttgatttttaacaatgaaca 25
            ||||||||||||||||||||
Sbjct: 1368 ttgatttttaacaatgaaca 1349



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>gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, complete sequence
          Length = 178210

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     agaaatgaaaggtatgtgaa 101
              ||||||||||||||||||||
Sbjct: 104852 agaaatgaaaggtatgtgaa 104871



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>dbj|AP000745.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B546A20,
             LL56-APP region, complete sequence
          Length = 55871

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aaatgaaaggtatgtgaaat 103
             ||||||||||||||||||||
Sbjct: 11744 aaatgaaaggtatgtgaaat 11763


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,055,485
Number of Sequences: 3902068
Number of extensions: 3055485
Number of successful extensions: 59578
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59531
Number of HSP's gapped (non-prelim): 47
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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