Clone Name | rbah63k10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, complete sequence Length = 198541 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gatttttaacaatgaacaat 27 |||||||||||||||||||| Sbjct: 164390 gatttttaacaatgaacaat 164409
>gb|AC132935.7| Mus musculus chromosome 15, clone RP24-142P21, complete sequence Length = 140484 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gatttttaacaatgaacaat 27 |||||||||||||||||||| Sbjct: 76119 gatttttaacaatgaacaat 76100
>gb|AC142345.1| Pan troglodytes BAC clone RP43-1K4 from Y, complete sequence Length = 213921 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gaaagaaatgaaaggtatgt 98 |||||||||||||||||||| Sbjct: 91943 gaaagaaatgaaaggtatgt 91962
>gb|AY813384.1| Schistosoma japonicum SJCHGC05070 protein mRNA, complete cds Length = 885 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gaaagaaatgaaaggtatgt 98 |||||||||||||||||||| Sbjct: 126 gaaagaaatgaaaggtatgt 107
>ref|XM_534354.2| PREDICTED: Canis familiaris similar to Secretogranin-1 precursor (Secretogranin I) (SgI) (Chromogranin B) (CgB) (LOC477165), mRNA Length = 2429 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggggcacccaaggcccgaca 74 |||||||||||||||||||| Sbjct: 446 ggggcacccaaggcccgaca 465
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 taacaatgaacaatggctaa 33 |||||||||||||||||||| Sbjct: 1748488 taacaatgaacaatggctaa 1748469
>gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, complete sequence Length = 204574 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gatttttaacaatgaacaat 27 |||||||||||||||||||| Sbjct: 44943 gatttttaacaatgaacaat 44962
>emb|BX546481.7| Zebrafish DNA sequence from clone DKEY-60J4 in linkage group 17, complete sequence Length = 103902 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctgcattgatttttaacaat 20 |||||||||||||||||||| Sbjct: 72296 ctgcattgatttttaacaat 72277
>dbj|BS000600.1| Pan troglodytes chromosome Y clone:PTB-253H05, complete sequences Length = 100704 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gaaagaaatgaaaggtatgt 98 |||||||||||||||||||| Sbjct: 4807 gaaagaaatgaaaggtatgt 4788
>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences Length = 161601 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gaaagaaatgaaaggtatgt 98 |||||||||||||||||||| Sbjct: 159917 gaaagaaatgaaaggtatgt 159898
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gaaagaaatgaaaggtatgt 98 |||||||||||||||||||| Sbjct: 15347967 gaaagaaatgaaaggtatgt 15347986
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gaacggttccgtgcattcga 230 |||||||||||||||||||| Sbjct: 154073 gaacggttccgtgcattcga 154092
>gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183526 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 agaaatgaaaggtatgtgaa 101 |||||||||||||||||||| Sbjct: 169853 agaaatgaaaggtatgtgaa 169834
>emb|AL929195.14| Zebrafish DNA sequence from clone CH211-149K12 in linkage group 16, complete sequence Length = 139679 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctgcattgatttttaacaat 20 |||||||||||||||||||| Sbjct: 96602 ctgcattgatttttaacaat 96583
>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22, complete sequence Length = 165445 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tgaactacaaaattctaata 278 |||||||||||||||||||| Sbjct: 5291 tgaactacaaaattctaata 5272
>dbj|BS000038.1| Pan troglodytes chromosome 22 clone:PTB-005J02, map 22, complete sequences Length = 142533 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaatgaaaggtatgtgaaat 103 |||||||||||||||||||| Sbjct: 136067 aaatgaaaggtatgtgaaat 136086
>dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, section 15/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaatgaaaggtatgtgaaat 103 |||||||||||||||||||| Sbjct: 149032 aaatgaaaggtatgtgaaat 149051
>gb|AC171898.2| Capitella capitata clone JGIBGZA-37B13, complete sequence Length = 32964 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ttgatttttaacaatgaaca 25 |||||||||||||||||||| Sbjct: 1368 ttgatttttaacaatgaaca 1349
>gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, complete sequence Length = 178210 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 agaaatgaaaggtatgtgaa 101 |||||||||||||||||||| Sbjct: 104852 agaaatgaaaggtatgtgaa 104871
>dbj|AP000745.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B546A20, LL56-APP region, complete sequence Length = 55871 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaatgaaaggtatgtgaaat 103 |||||||||||||||||||| Sbjct: 11744 aaatgaaaggtatgtgaaat 11763 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,055,485 Number of Sequences: 3902068 Number of extensions: 3055485 Number of successful extensions: 59578 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59531 Number of HSP's gapped (non-prelim): 47 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)