ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63k06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 8e-28
2gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 88 4e-14
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 4e-14
4gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom... 88 4e-14
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
6emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in ... 44 0.59
7ref|XM_663191.1| Cryptosporidium hominis TU502 U4/U6-associated ... 42 2.3
8emb|BX663608.26| Zebrafish DNA sequence from clone DKEY-223I19 i... 42 2.3
9emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 42 2.3
10gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromoso... 42 2.3
11gb|AY903064.1| Cyanea annaskala clone CHE6 internal transcribed ... 42 2.3
12emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chr... 42 2.3
13emb|AL627206.20| Mouse DNA sequence from clone RP23-206H22 on ch... 42 2.3
14ref|NM_188505.1| Oryza sativa (japonica cultivar-group), Ozsa817... 40 9.2
15ref|XM_630650.1| Dictyostelium discoideum hypothetical protein (... 40 9.2
16ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-exp... 40 9.2
17gb|AY500863.1| Penaeus monodon microsatellite PM3854 sequence 40 9.2
18gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome... 40 9.2
19gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete... 40 9.2
20emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in l... 40 9.2
21emb|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segme... 40 9.2
22emb|AL162494.10| Human DNA sequence from clone RP11-417I19 on ch... 40 9.2
23gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Ho... 40 9.2
24emb|AJ884948.1| Chlamydomonas reinhardtii partial mRNA for gamma... 40 9.2
25emb|BX470109.3| Mouse DNA sequence from clone RP23-59I3 on chrom... 40 9.2
26gb|AC080153.4| Homo sapiens chromosome , clone RP13-492I13, comp... 40 9.2
27gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 gen... 40 9.2
28gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complet... 40 9.2
29gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, com... 40 9.2
30gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, comple... 40 9.2
31gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 40 9.2
32emb|BX323987.12| Zebrafish DNA sequence from clone DKEY-125E8, c... 40 9.2
33gb|AC023949.6|AC023949 Homo sapiens chromosome 8, clone RP11-711... 40 9.2
34dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
37gb|AC114546.14| Homo sapiens chromosome 15, clone RP11-463I20, c... 40 9.2
38dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
39dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
40dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
41dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
42gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 40 9.2
43dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
44dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
45dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
46dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
47gb|AC078889.20| Homo sapiens 12 BAC RP11-335I12 (Roswell Park Ca... 40 9.2
48gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, comple... 40 9.2
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
50gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B... 40 9.2
51gb|AF035794.1|AF035794 Homo sapiens rheumatoid factor RF-IP18 mR... 40 9.2
52gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, comple... 40 9.2
53emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chro... 40 9.2
54emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 9.2
55dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 9.2 
>dbj|AK069807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O14, full
            insert sequence
          Length = 2020

 Score =  133 bits (67), Expect = 8e-28
 Identities = 143/169 (84%)
 Strand = Plus / Minus

                                                                        
Query: 504  cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatngagatgctcttctccg 563
            ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||  |
Sbjct: 1567 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttctggg 1508

                                                                        
Query: 564  tcccgacaacacccatggtaagagcactggcgaagatgacggaggagaggatgaagacna 623
            | || ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 1507 ttccaacaacacccattgtaagagcactcgcgaagatgacagaggataggatgaagacaa 1448

                                                             
Query: 624  tcagcgacgctctcttgagcacaagcacgatctttcggaccaagcactg 672
            |||| || |||| |||||||||  ||||||  || ||||||||| ||||
Sbjct: 1447 tcagagatgctcgcttgagcacgtgcacgagtttccggaccaaggactg 1399



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 327  cgtgtgcttgcaggttagcgaggagctaac 356
            |||| |||||||||||||||||| ||||||
Sbjct: 1725 cgtgcgcttgcaggttagcgaggcgctaac 1696



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 431  gaggtgaggtcaattaggtattggcctgg 459
            ||||||||||||||||||| ||| |||||
Sbjct: 1641 gaggtgaggtcaattaggtgttgacctgg 1613



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 334  ttgcaggttagcgaggagctaaca 357
            |||||||||||| |||||||||||
Sbjct: 1796 ttgcaggttagccaggagctaaca 1773
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>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                         
Query: 574   acccatggtaagagcactggcgaagatgacggaggagaggatgaagacnatcagcgacgc 633
             |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 99586 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 99645

                                                    
Query: 634   tctcttgagcacaagcacgatctttcggaccaagcactg 672
             || |||||||||  ||||||  || ||||||||| ||||
Sbjct: 99646 tcgcttgagcacgtgcacgagtttccggaccaaggactg 99684



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 504   cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatngagatgctcttct 560
             ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 99225 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 99281



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 327   cgtgtgcttgcaggttagcgaggagctaac 356
             |||| |||||||||||||||||| ||||||
Sbjct: 99067 cgtgcgcttgcaggttagcgaggcgctaac 99096



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 431   gaggtgaggtcaattaggtattggcctgg 459
             ||||||||||||||||||| ||| |||||
Sbjct: 99151 gaggtgaggtcaattaggtgttgacctgg 99179



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 334   ttgcaggttagcgaggagctaaca 357
             |||||||||||| |||||||||||
Sbjct: 98996 ttgcaggttagccaggagctaaca 99019
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                            
Query: 574      acccatggtaagagcactggcgaagatgacggaggagaggatgaagacnatcagcgacgc 633
                |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 29267719 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 29267778

                                                       
Query: 634      tctcttgagcacaagcacgatctttcggaccaagcactg 672
                || |||||||||  ||||||  || ||||||||| ||||
Sbjct: 29267779 tcgcttgagcacgtgcacgagtttccggaccaaggactg 29267817



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 504      cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatngagatgctcttct 560
                ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 29267358 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 29267414



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 327      cgtgtgcttgcaggttagcgaggagctaac 356
                |||| |||||||||||||||||| ||||||
Sbjct: 29267200 cgtgcgcttgcaggttagcgaggcgctaac 29267229



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 431      gaggtgaggtcaattaggtattggcctgg 459
                ||||||||||||||||||| ||| |||||
Sbjct: 29267284 gaggtgaggtcaattaggtgttgacctgg 29267312



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 334      ttgcaggttagcgaggagctaaca 357
                |||||||||||| |||||||||||
Sbjct: 29267129 ttgcaggttagccaggagctaaca 29267152
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>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
             sequence
          Length = 139788

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                         
Query: 574   acccatggtaagagcactggcgaagatgacggaggagaggatgaagacnatcagcgacgc 633
             |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 88281 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 88222

                                                    
Query: 634   tctcttgagcacaagcacgatctttcggaccaagcactg 672
             || |||||||||  ||||||  || ||||||||| ||||
Sbjct: 88221 tcgcttgagcacgtgcacgagtttccggaccaaggactg 88183



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 504   cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatngagatgctcttct 560
             ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 88642 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 88586



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 327   cgtgtgcttgcaggttagcgaggagctaac 356
             |||| |||||||||||||||||| ||||||
Sbjct: 88800 cgtgcgcttgcaggttagcgaggcgctaac 88771



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 431   gaggtgaggtcaattaggtattggcctgg 459
             ||||||||||||||||||| ||| |||||
Sbjct: 88716 gaggtgaggtcaattaggtgttgacctgg 88688



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   ttgcaggttagcgaggagctaaca 357
             |||||||||||| |||||||||||
Sbjct: 88871 ttgcaggttagccaggagctaaca 88848
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                            
Query: 574      acccatggtaagagcactggcgaagatgacggaggagaggatgaagacnatcagcgacgc 633
                |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 29359147 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 29359206

                                                       
Query: 634      tctcttgagcacaagcacgatctttcggaccaagcactg 672
                || |||||||||  ||||||  || ||||||||| ||||
Sbjct: 29359207 tcgcttgagcacgtgcacgagtttccggaccaaggactg 29359245



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 504      cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatngagatgctcttct 560
                ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 29358786 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 29358842



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 327      cgtgtgcttgcaggttagcgaggagctaac 356
                |||| |||||||||||||||||| ||||||
Sbjct: 29358628 cgtgcgcttgcaggttagcgaggcgctaac 29358657



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 431      gaggtgaggtcaattaggtattggcctgg 459
                ||||||||||||||||||| ||| |||||
Sbjct: 29358712 gaggtgaggtcaattaggtgttgacctgg 29358740



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 334      ttgcaggttagcgaggagctaaca 357
                |||||||||||| |||||||||||
Sbjct: 29358557 ttgcaggttagccaggagctaaca 29358580
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>emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in linkage group 11,
             complete sequence
          Length = 124598

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 288   tgctaccactactactgctgct 309
             ||||||||||||||||||||||
Sbjct: 42925 tgctaccactactactgctgct 42946



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||| |||||||||||||||||
Sbjct: 42946 tgctactactactactgctgctac 42969
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>ref|XM_663191.1| Cryptosporidium hominis TU502 U4/U6-associated RNA splicing
            factor-related (Chro.80603) partial mRNA
          Length = 6513

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 591  tggcgaagatgacggaggaga 611
            |||||||||||||||||||||
Sbjct: 2238 tggcgaagatgacggaggaga 2258
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>emb|BX663608.26| Zebrafish DNA sequence from clone DKEY-223I19 in linkage group 7,
             complete sequence
          Length = 190528

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 287   atgctaccactactactgctgctac 311
             ||||||| |||||||||||||||||
Sbjct: 16591 atgctactactactactgctgctac 16615
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 492     ggttggtttacccgcagaagc 512
               |||||||||||||||||||||
Sbjct: 3143861 ggttggtttacccgcagaagc 3143841
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>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete
             sequence
          Length = 209915

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 384   tttatttttgtatccttgaactgaa 408
             |||||||||||||||||||| ||||
Sbjct: 82843 tttatttttgtatccttgaattgaa 82819
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>gb|AY903064.1| Cyanea annaskala clone CHE6 internal transcribed spacer 1, partial
           sequence
          Length = 333

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 288 tgctaccactactactgctgctacg 312
           |||||||||||||||||||| ||||
Sbjct: 62  tgctaccactactactgctggtacg 38
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>emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chromosome 4, complete
              sequence
          Length = 217762

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    cacacacacgacacgacacag 231
              |||||||||||||||||||||
Sbjct: 196067 cacacacacgacacgacacag 196087
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>emb|AL627206.20| Mouse DNA sequence from clone RP23-206H22 on chromosome 4, complete
              sequence
          Length = 158781

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 289    gctaccactactactgctgct 309
              |||||||||||||||||||||
Sbjct: 106290 gctaccactactactgctgct 106310
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>ref|NM_188505.1| Oryza sativa (japonica cultivar-group), Ozsa8174 predicted mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 gcacacacacgacacgacac 229
           ||||||||||||||||||||
Sbjct: 167 gcacacacacgacacgacac 186
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>ref|XM_630650.1| Dictyostelium discoideum hypothetical protein (DDB0219565), partial
            mRNA
          Length = 8055

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 288  tgctaccactactactgctgctac 311
            |||||| |||||||||||||||||
Sbjct: 5563 tgctactactactactgctgctac 5540
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>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6
           (OSJNBb0014I11.3), mRNA
          Length = 1240

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ctaccactactactgctgct 309
           ||||||||||||||||||||
Sbjct: 15  ctaccactactactgctgct 34
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>gb|AY500863.1| Penaeus monodon microsatellite PM3854 sequence
          Length = 909

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 cacacacacgacacgacaca 230
           ||||||||||||||||||||
Sbjct: 377 cacacacacgacacgacaca 358
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>gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome 19, complete sequence
          Length = 208584

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    gcagcaagcagccaatttgg 33
             ||||||||||||||||||||
Sbjct: 27582 gcagcaagcagccaatttgg 27601
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>gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete cds
          Length = 1250

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ctaccactactactgctgct 309
           ||||||||||||||||||||
Sbjct: 8   ctaccactactactgctgct 27
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>emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in linkage group 1,
             complete sequence
          Length = 80060

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||| |||||||||||||||||
Sbjct: 43554 tgctactactactactgctgctac 43577



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||| |||||||||||||||||
Sbjct: 43137 tgctactactactactgctgctac 43160
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>emb|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6
          Length = 287130

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 333    cttgcaggttagcgaggagctaac 356
              ||||||||||||||||||| ||||
Sbjct: 153902 cttgcaggttagcgaggagataac 153879
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>emb|AL162494.10| Human DNA sequence from clone RP11-417I19 on chromosome 13, complete
             sequence
          Length = 77808

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   gcatgaatgatgctaccact 297
             ||||||||||||||||||||
Sbjct: 43602 gcatgaatgatgctaccact 43583
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>gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 222634

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||| |||||||||||||||||
Sbjct: 24250 tgctactactactactgctgctac 24273
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>emb|AJ884948.1| Chlamydomonas reinhardtii partial mRNA for gamma-tocopherol
            methyltransferase
          Length = 1573

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 288  tgctaccactactactgctgctac 311
            |||||||||||| |||||||||||
Sbjct: 1099 tgctaccactaccactgctgctac 1076
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>emb|BX470109.3| Mouse DNA sequence from clone RP23-59I3 on chromosome 4, complete
              sequence
          Length = 228869

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    ctaccactactactgctgct 309
              ||||||||||||||||||||
Sbjct: 186605 ctaccactactactgctgct 186586
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>gb|AC080153.4| Homo sapiens chromosome , clone RP13-492I13, complete sequence
          Length = 55176

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   atgctaccactactactgctgcta 310
             |||||| |||||||||||||||||
Sbjct: 12539 atgctagcactactactgctgcta 12516
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>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
             sequence
          Length = 135510

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   ctaccactactactgctgct 309
             ||||||||||||||||||||
Sbjct: 21873 ctaccactactactgctgct 21892
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>gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complete sequence
          Length = 126750

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 597   agatgacggaggagaggatgaaga 620
             |||||| |||||||||||||||||
Sbjct: 66099 agatgagggaggagaggatgaaga 66076
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>gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, complete sequence
          Length = 200208

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    ggagtggggagaggtgaggt 440
              ||||||||||||||||||||
Sbjct: 151217 ggagtggggagaggtgaggt 151236
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>gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, complete sequence
          Length = 162100

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 287    atgctaccactactactgctgcta 310
              |||||| |||||||||||||||||
Sbjct: 148330 atgctagcactactactgctgcta 148307
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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||| |||||||||||||||||
Sbjct: 44235 tgctactactactactgctgctac 44212
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>emb|BX323987.12| Zebrafish DNA sequence from clone DKEY-125E8, complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||||||| |||||||||||||
Sbjct: 18657 tgctaccactcctactgctgctac 18680
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>gb|AC023949.6|AC023949 Homo sapiens chromosome 8, clone RP11-711B6, complete sequence
          Length = 191296

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    ggagtggggagaggtgaggt 440
              ||||||||||||||||||||
Sbjct: 140825 ggagtggggagaggtgaggt 140806
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      ctaccactactactgctgct 309
                ||||||||||||||||||||
Sbjct: 21312486 ctaccactactactgctgct 21312467
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 334      ttgcaggttagcgaggagctaaca 357
                |||||||||||| |||||||||||
Sbjct: 20126263 ttgcaggttagctaggagctaaca 20126240
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     gcacacacacgacacgacac 229
               ||||||||||||||||||||
Sbjct: 6648476 gcacacacacgacacgacac 6648457
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>gb|AC114546.14| Homo sapiens chromosome 15, clone RP11-463I20, complete sequence
          Length = 86106

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   atgctaccactactactgctgcta 310
             |||||| |||||||||||||||||
Sbjct: 12336 atgctagcactactactgctgcta 12313
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>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0443E05
          Length = 176935

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 gcacacacacgacacgacac 229
           ||||||||||||||||||||
Sbjct: 628 gcacacacacgacacgacac 609
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>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483F08
          Length = 148985

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    gcacacacacgacacgacac 229
              ||||||||||||||||||||
Sbjct: 128647 gcacacacacgacacgacac 128628
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>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1372_D12
          Length = 179898

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   ttgcaggttagcgaggagctaaca 357
             |||||||||||| |||||||||||
Sbjct: 28651 ttgcaggttagctaggagctaaca 28628
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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   ttgcaggttagcgaggagctaaca 357
             |||||||||||| |||||||||||
Sbjct: 90866 ttgcaggttagctaggagctaaca 90843
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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 288   tgctaccactactactgctgctac 311
             |||||| |||||||||||||||||
Sbjct: 77817 tgctactactactactgctgctac 77794
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>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ctaccactactactgctgct 309
           ||||||||||||||||||||
Sbjct: 28  ctaccactactactgctgct 47
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>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ctaccactactactgctgct 309
           ||||||||||||||||||||
Sbjct: 28  ctaccactactactgctgct 47
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>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full
           insert sequence
          Length = 1263

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ctaccactactactgctgct 309
           ||||||||||||||||||||
Sbjct: 34  ctaccactactactgctgct 53
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>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
           insert sequence
          Length = 1259

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ctaccactactactgctgct 309
           ||||||||||||||||||||
Sbjct: 28  ctaccactactactgctgct 47
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>gb|AC078889.20| Homo sapiens 12 BAC RP11-335I12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163992

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 42     ctgatatatttacagcacccaatacaaa 69
              ||||||||||  ||||||||||||||||
Sbjct: 124825 ctgatatattcccagcacccaatacaaa 124852
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>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence
          Length = 135249

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    ctagctagcaaatggagctagcta 112
             ||||||||| ||||||||||||||
Sbjct: 61856 ctagctagctaatggagctagcta 61879
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      ctaccactactactgctgct 309
                ||||||||||||||||||||
Sbjct: 21323750 ctaccactactactgctgct 21323731
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>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence
          Length = 186314

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   gcagcaagcagccaatttgg 33
            ||||||||||||||||||||
Sbjct: 3492 gcagcaagcagccaatttgg 3473
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>gb|AF035794.1|AF035794 Homo sapiens rheumatoid factor RF-IP18 mRNA, partial cds
          Length = 294

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 tgatgctaccactactactg 304
           ||||||||||||||||||||
Sbjct: 172 tgatgctaccactactactg 153
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>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence
          Length = 185283

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     gcagcaagcagccaatttgg 33
              ||||||||||||||||||||
Sbjct: 114259 gcagcaagcagccaatttgg 114278
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>emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chromosome 4, complete
              sequence
          Length = 184644

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     agctagctagcaaatggagc 106
              ||||||||||||||||||||
Sbjct: 179675 agctagctagcaaatggagc 179656
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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    ctaccactactactgctgct 309
              ||||||||||||||||||||
Sbjct: 174590 ctaccactactactgctgct 174609
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>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
             sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   accactactactgctgctac 311
             ||||||||||||||||||||
Sbjct: 57647 accactactactgctgctac 57628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,142,586
Number of Sequences: 3902068
Number of extensions: 5142586
Number of successful extensions: 96601
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96249
Number of HSP's gapped (non-prelim): 352
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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