Clone Name | rbah63k01 |
---|---|
Clone Library Name | barley_pub |
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 35.4 bits (80), Expect = 0.090 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Frame = -1 Query: 473 RQQVCHLRWASTGMRKGWR----VP*AGDHPLQPQGLRFRQEEGLPLQRPAFLRVCGEGQ 306 R +V LR +R+ R VP G HP + + + R ++G P +R R G G Sbjct: 56 RARVPQLRGRDFALRRADRRVEHVPLRGRHP-RVRRVPQRDQDGAPRRRHLLRRRVG-GH 113 Query: 305 QGPRGYAGVRPPRRLDG-LVQPRLRPRDLQKGG*LHHGRHDPRQEARERLRRA 150 +G +AG R +D L Q PR + G H RQ RE+ R A Sbjct: 114 RGRNRHAGDRRAPGVDSRLRQQHQHPRGRHASDRVQDGAHPRRQRLREQPRHA 166
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 33.9 bits (76), Expect = 0.26 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Frame = -1 Query: 482 QHLRQQVCHLRWASTGMRKGWRVP*AG---DHPLQPQGLRFRQ------EEGLPLQRPAF 330 Q L QQV H+ A G+ G +P A ++P PQ ++ Q +E +P + Sbjct: 52 QPLGQQVPHMPLAKDGLTMGKEMPHAQYGKEYPHLPQYMKEVQPVPRMGKEAVPKKGKEI 111 Query: 329 LRVCGEGQQGPRGYAGVRPPRRLDGL 252 G+QGPRG G R P GL Sbjct: 112 PLASLRGEQGPRGEPGPRGPPGPPGL 137
>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 32.3 bits (72), Expect = 0.77 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%) Frame = -1 Query: 482 QHLRQQVCHLRWASTGMRKGWRVP*---AGDHPLQPQGLRFRQ------EEGLPLQRPAF 330 Q L QQV H+ A G+ G +P ++P PQ ++ Q +E +P + Sbjct: 52 QPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEI 111 Query: 329 LRVCGEGQQGPRGYAGVRPPRRLDGL 252 G+QGPRG G R P GL Sbjct: 112 PLASLRGEQGPRGEPGPRGPPGPPGL 137
>UVRB_CHRVO (Q7NTA7) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 670 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = -2 Query: 304 KDLGVTPEYDLLDGLTDSY----NLDFGRGTFRKEAD 206 K+ TP+ D++ LT +LDFGRGTFR D Sbjct: 167 KEGETTPQRDIISRLTTMQYSRNDLDFGRGTFRVRGD 203
>FUT1_PIG (Q29043) Galactoside 2-alpha-L-fucosyltransferase 1 (EC 2.4.1.69)| (GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 1) (Alpha(1,2)FT 1) (Fucosyltransferase 1) Length = 365 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = -1 Query: 479 HLRQQVC-------HLRWASTGMRKGWRVP*AGDHPLQPQGLRFRQEEGLPLQRPAFLRV 321 HLR+Q+ HLR + G+ +R+P GD P G+ R+ + L + + V Sbjct: 176 HLREQIRSEFTLHDHLRQEAQGVLSQFRLPRTGDRPSTFVGVHVRRGDYLRVMPKRWKGV 235 Query: 320 CGEG 309 G+G Sbjct: 236 VGDG 239
>SYI_STAES (Q8CSX1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 916 Score = 28.9 bits (63), Expect = 8.5 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Frame = -2 Query: 508 NPKASKQVYNISGSKYVTFDGLARACAKAGGFPEPEI---IHYNPKDFDFGKKKAFPFRD 338 +P+ + YN++G KY+ L+ A A+A G+ + I + K+ +F + + PF D Sbjct: 246 HPELNYGQYNVNGHKYIVAQALSEAVAEALGWDKDSIQLEKEFTGKELEFVEAQ-HPFLD 304 Query: 337 Q 335 + Sbjct: 305 R 305
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +3 Query: 198 VVKSASFLKVPRPKSRLYESVKPSRRSYSGVTP-RSLLAFSTDAKKCWSLKGKAFFLPKS 374 V+ FLK+ P S L E + Y V+P RSL +D C + +G +F +S Sbjct: 1447 VLSKDDFLKLMLPDSPLVEEGRRKFSFYGNVSPRRSLYRTLSDESVCSNRRGSSFASSRS 1506 Query: 375 KSL 383 L Sbjct: 1507 SIL 1509 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,623,107 Number of Sequences: 219361 Number of extensions: 1549964 Number of successful extensions: 5468 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5463 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)