>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
 Frame = -1

Query: 473 RQQVCHLRWASTGMRKGWR----VP*AGDHPLQPQGLRFRQEEGLPLQRPAFLRVCGEGQ 306
           R +V  LR     +R+  R    VP  G HP + + +  R ++G P +R    R  G G 
Sbjct: 56  RARVPQLRGRDFALRRADRRVEHVPLRGRHP-RVRRVPQRDQDGAPRRRHLLRRRVG-GH 113

Query: 305 QGPRGYAGVRPPRRLDG-LVQPRLRPRDLQKGG*LHHGRHDPRQEARERLRRA 150
           +G   +AG R    +D  L Q    PR       +  G H  RQ  RE+ R A
Sbjct: 114 RGRNRHAGDRRAPGVDSRLRQQHQHPRGRHASDRVQDGAHPRRQRLREQPRHA 166

>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = -1

Query: 482 QHLRQQVCHLRWASTGMRKGWRVP*AG---DHPLQPQGLRFRQ------EEGLPLQRPAF 330
           Q L QQV H+  A  G+  G  +P A    ++P  PQ ++  Q      +E +P +    
Sbjct: 52  QPLGQQVPHMPLAKDGLTMGKEMPHAQYGKEYPHLPQYMKEVQPVPRMGKEAVPKKGKEI 111

Query: 329 LRVCGEGQQGPRGYAGVRPPRRLDGL 252
                 G+QGPRG  G R P    GL
Sbjct: 112 PLASLRGEQGPRGEPGPRGPPGPPGL 137

>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = -1

Query: 482 QHLRQQVCHLRWASTGMRKGWRVP*---AGDHPLQPQGLRFRQ------EEGLPLQRPAF 330
           Q L QQV H+  A  G+  G  +P      ++P  PQ ++  Q      +E +P +    
Sbjct: 52  QPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEI 111

Query: 329 LRVCGEGQQGPRGYAGVRPPRRLDGL 252
                 G+QGPRG  G R P    GL
Sbjct: 112 PLASLRGEQGPRGEPGPRGPPGPPGL 137

>UVRB_CHRVO (Q7NTA7) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 670

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 304 KDLGVTPEYDLLDGLTDSY----NLDFGRGTFRKEAD 206
           K+   TP+ D++  LT       +LDFGRGTFR   D
Sbjct: 167 KEGETTPQRDIISRLTTMQYSRNDLDFGRGTFRVRGD 203

>FUT1_PIG (Q29043) Galactoside 2-alpha-L-fucosyltransferase 1 (EC 2.4.1.69)|
           (GDP-L-fucose:beta-D-galactoside
           2-alpha-L-fucosyltransferase 1) (Alpha(1,2)FT 1)
           (Fucosyltransferase 1)
          Length = 365

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -1

Query: 479 HLRQQVC-------HLRWASTGMRKGWRVP*AGDHPLQPQGLRFRQEEGLPLQRPAFLRV 321
           HLR+Q+        HLR  + G+   +R+P  GD P    G+  R+ + L +    +  V
Sbjct: 176 HLREQIRSEFTLHDHLRQEAQGVLSQFRLPRTGDRPSTFVGVHVRRGDYLRVMPKRWKGV 235

Query: 320 CGEG 309
            G+G
Sbjct: 236 VGDG 239

>SYI_STAES (Q8CSX1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 916

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -2

Query: 508 NPKASKQVYNISGSKYVTFDGLARACAKAGGFPEPEI---IHYNPKDFDFGKKKAFPFRD 338
           +P+ +   YN++G KY+    L+ A A+A G+ +  I     +  K+ +F + +  PF D
Sbjct: 246 HPELNYGQYNVNGHKYIVAQALSEAVAEALGWDKDSIQLEKEFTGKELEFVEAQ-HPFLD 304

Query: 337 Q 335
           +
Sbjct: 305 R 305

>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2|
          Length = 1722

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 198  VVKSASFLKVPRPKSRLYESVKPSRRSYSGVTP-RSLLAFSTDAKKCWSLKGKAFFLPKS 374
            V+    FLK+  P S L E  +     Y  V+P RSL    +D   C + +G +F   +S
Sbjct: 1447 VLSKDDFLKLMLPDSPLVEEGRRKFSFYGNVSPRRSLYRTLSDESVCSNRRGSSFASSRS 1506

Query: 375  KSL 383
              L
Sbjct: 1507 SIL 1509


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,623,107
Number of Sequences: 219361
Number of extensions: 1549964
Number of successful extensions: 5468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5463
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)