>gb|AY106512.1| Zea mays PCO062228 mRNA sequence
          Length = 1608

 Score =  137 bits (69), Expect = 4e-29
 Identities = 144/169 (85%)
 Strand = Plus / Minus

                                                                        
Query: 331  atgccatcacttccgtcctgttgcgattcttggctttcctttcacctcggcttcctgggg 390
            |||| |||||||||  |||||||| || |  ||||||||||| ||||||| |||||| ||
Sbjct: 1276 atgcaatcacttcctgcctgttgcaatgcgcggctttcctttgacctcggtttcctgtgg 1217

                                                                        
Query: 391  actgtggaggtagatggatgtctttgcgtttgcaggattatggttctcggcgccacggct 450
            ||||||||| |||||||||||||||||   |||||| || || || ||||| ||||||||
Sbjct: 1216 actgtggagatagatggatgtctttgcagctgcagggttgtgattttcggccccacggct 1157

                                                             
Query: 451  ccagtcatagcacaccccataagcaaatatcgagccatcattattgaag 499
            |||||||||||| ||| ||||||||||||| || |||||| | ||||||
Sbjct: 1156 ccagtcatagcaaaccgcataagcaaatatggaaccatcactgttgaag 1108

>ref|XM_480345.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1750

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                        
Query: 349  tgttgcgattcttggctttcctttcacctcggcttcctggggactgtggaggtagatgga 408
            |||||||||||| ||||| ||||| ||||| | |||||| |||||||| || ||||||||
Sbjct: 1224 tgttgcgattctcggcttccctttaacctcagattcctgtggactgtgaagatagatgga 1165

                                                                        
Query: 409  tgtctttgcgtttgcaggattatggttctcggcgccacggctccagtcatagcacacccc 468
            |||||||||  | ||||| || ||||| || || |||||||||||||||||||| ||  |
Sbjct: 1164 tgtctttgcagtggcagggttgtggttttcagccccacggctccagtcatagcagactgc 1105

                                           
Query: 469  ataagcaaatatcgagccatcattattgaag 499
            ||||||||||||||| |||||| | ||||||
Sbjct: 1104 ataagcaaatatcgacccatcactgttgaag 1074

>dbj|AK111670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156C15, full
            insert sequence
          Length = 1750

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                        
Query: 349  tgttgcgattcttggctttcctttcacctcggcttcctggggactgtggaggtagatgga 408
            |||||||||||| ||||| ||||| ||||| | |||||| |||||||| || ||||||||
Sbjct: 1224 tgttgcgattctcggcttccctttaacctcagattcctgtggactgtgaagatagatgga 1165

                                                                        
Query: 409  tgtctttgcgtttgcaggattatggttctcggcgccacggctccagtcatagcacacccc 468
            |||||||||  | ||||| || ||||| || || |||||||||||||||||||| ||  |
Sbjct: 1164 tgtctttgcagtggcagggttgtggttttcagccccacggctccagtcatagcagactgc 1105

                                           
Query: 469  ataagcaaatatcgagccatcattattgaag 499
            ||||||||||||||| |||||| | ||||||
Sbjct: 1104 ataagcaaatatcgacccatcactgttgaag 1074

>gb|BT017970.1| Zea mays clone EL01N0524B07.c mRNA sequence
          Length = 1422

 Score =  121 bits (61), Expect = 2e-24
 Identities = 142/169 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  atgccatcacttccgtcctgttgcgattcttggctttcctttcacctcggcttcctgggg 390
            |||| |||||||||  |||||||| || |  || |||||||| ||||||| |||||| ||
Sbjct: 1098 atgcaatcacttcctgcctgttgcaatgcgcgggtttcctttgacctcggtttcctgtgg 1039

                                                                        
Query: 391  actgtggaggtagatggatgtctttgcgtttgcaggattatggttctcggcgccacggct 450
            ||||||||| |||||||||||||||||   |||||| || || || ||||| |||||| |
Sbjct: 1038 actgtggagatagatggatgtctttgcagctgcagggttgtgattttcggccccacgggt 979

                                                             
Query: 451  ccagtcatagcacaccccataagcaaatatcgagccatcattattgaag 499
            |||||||||||| ||| ||||||||||||| || |||||| | ||||||
Sbjct: 978  ccagtcatagcaaaccgcataagcaaatatggaaccatcactgttgaag 930

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                           
Query: 384     cctggggactgtggaggtagatggatgtctttgcgtttgcaggattatggttctcggcgc 443
               |||| |||||||| || |||||||||||||||||  | ||||| || ||||| || || |
Sbjct: 4490991 cctgtggactgtgaagatagatggatgtctttgcagtggcagggttgtggttttcagccc 4491050

                                  
Query: 444     cacggctccagtcatagca 462
               |||||||||||||||||||
Sbjct: 4491051 cacggctccagtcatagca 4491069



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 468     cataagcaaatatcgagccatcattattgaag 499
               |||||||||||||||| |||||| | ||||||
Sbjct: 4491754 cataagcaaatatcgacccatcactgttgaag 4491785

>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 384   cctggggactgtggaggtagatggatgtctttgcgtttgcaggattatggttctcggcgc 443
             |||| |||||||| || |||||||||||||||||  | ||||| || ||||| || || |
Sbjct: 14839 cctgtggactgtgaagatagatggatgtctttgcagtggcagggttgtggttttcagccc 14898

                                
Query: 444   cacggctccagtcatagca 462
             |||||||||||||||||||
Sbjct: 14899 cacggctccagtcatagca 14917



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 468   cataagcaaatatcgagccatcattattgaag 499
             |||||||||||||||| |||||| | ||||||
Sbjct: 15602 cataagcaaatatcgacccatcactgttgaag 15633

>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0583B06
          Length = 134442

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 384   cctggggactgtggaggtagatggatgtctttgcgtttgcaggattatggttctcggcgc 443
             |||| |||||||| || |||||||||||||||||  | ||||| || ||||| || || |
Sbjct: 56881 cctgtggactgtgaagatagatggatgtctttgcagtggcagggttgtggttttcagccc 56940

                                
Query: 444   cacggctccagtcatagca 462
             |||||||||||||||||||
Sbjct: 56941 cacggctccagtcatagca 56959



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 468   cataagcaaatatcgagccatcattattgaag 499
             |||||||||||||||| |||||| | ||||||
Sbjct: 57644 cataagcaaatatcgacccatcactgttgaag 57675

>ref|NM_192968.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 448 gctccagtcatagcacaccccataagcaaatatcgagccatcattattgaa 498
           |||||| |||||||| ||| ||||||||||||| |||||||| | ||||||
Sbjct: 930 gctccaatcatagcataccgcataagcaaatattgagccatcctgattgaa 880

>dbj|AK102655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101G11, full
           insert sequence
          Length = 1410

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 448 gctccagtcatagcacaccccataagcaaatatcgagccatcattattgaa 498
           |||||| |||||||| ||| ||||||||||||| |||||||| | ||||||
Sbjct: 986 gctccaatcatagcataccgcataagcaaatattgagccatcctgattgaa 936

>dbj|AK111923.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B12, full
            insert sequence
          Length = 1313

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 448  gctccagtcatagcacaccccataagcaaatatcgagcca 487
            |||||| |||||||| ||| ||||||||||||| ||||||
Sbjct: 1002 gctccaatcatagcataccgcataagcaaatattgagcca 963

>gb|AY109903.1| Zea mays CL12785_1 mRNA sequence
          Length = 635

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 448 gctccagtcatagcacaccccataagcaaatatcgagccatcattattgaa 498
           |||||| ||||| || ||| | ||||||||||| |||||||||| ||||||
Sbjct: 325 gctccaatcataacataccgcgtaagcaaatatagagccatcatgattgaa 375

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 56      tgacaaaaggctacgcactga 76
               |||||||||||||||||||||
Sbjct: 4437376 tgacaaaaggctacgcactga 4437396

>emb|CR974429.7| Mouse DNA sequence from clone RP23-177B9 on chromosome 12, complete
             sequence
          Length = 212593

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    cacttacaagacactgaagac 45
             |||||||||||||||||||||
Sbjct: 13351 cacttacaagacactgaagac 13371

>gb|AC102590.9| Mus musculus chromosome 12, clone RP23-335D14, complete sequence
          Length = 202328

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    cacttacaagacactgaagac 45
             |||||||||||||||||||||
Sbjct: 76684 cacttacaagacactgaagac 76704

>gb|AF305949.1|AF305949 Lama glama immunoglobulin heavy chain variable domain (VH1) gene,
           partial cds
          Length = 770

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 406 ggatgtctttgcgtttgcagg 426
           |||||||||||||||||||||
Sbjct: 405 ggatgtctttgcgtttgcagg 425

>gb|AF305946.1|AF305946 Lama glama immunoglobulin heavy chain variable domain (VHH3) gene,
           partial cds
          Length = 765

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 406 ggatgtctttgcgtttgcagg 426
           |||||||||||||||||||||
Sbjct: 403 ggatgtctttgcgtttgcagg 423

>gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, complete sequence
          Length = 169442

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 349   tgttgcgattcttggctttcctttc 373
             ||||| |||||||||||||||||||
Sbjct: 87016 tgttgggattcttggctttcctttc 87040

>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314,
             complete sequence
          Length = 126349

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 470   taagcaaatatcgagccatcattattgaa 498
             ||||||||||| ||||||||||| |||||
Sbjct: 42877 taagcaaatattgagccatcattgttgaa 42905

>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence
          Length = 143401

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   gtggaggtagatggatgtct 413
             ||||||||||||||||||||
Sbjct: 41831 gtggaggtagatggatgtct 41812

>gb|AC119162.12| Mus musculus chromosome 3, clone RP23-231L12, complete sequence
          Length = 201218

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tgaagactttcacgttttga 58
             ||||||||||||||||||||
Sbjct: 56580 tgaagactttcacgttttga 56599

>gb|AC122477.5| Mus musculus BAC clone RP24-336L24 from chromosome 14, complete sequence
          Length = 158605

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    gtggaggtagatggatgtct 413
              ||||||||||||||||||||
Sbjct: 154871 gtggaggtagatggatgtct 154852

>gb|AC097626.9| Homo sapiens X BAC RP11-527B14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115435

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 360   ttggctttcctttcacctcggctt 383
             |||||||||||||| |||||||||
Sbjct: 65420 ttggctttcctttctcctcggctt 65443

>dbj|AB105672.1| Bovine viral diarrhea virus 1 gene for structural glycoprotein E2,
           partial cds, isolate: HKD858 CP/95
          Length = 420

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  acctacaccacttacaagac 36
           ||||||||||||||||||||
Sbjct: 211 acctacaccacttacaagac 192

>emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in linkage group 16,
             complete sequence
          Length = 137333

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   ttggctttcctttcacctcg 379
             ||||||||||||||||||||
Sbjct: 99468 ttggctttcctttcacctcg 99487


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,573,796
Number of Sequences: 3902068
Number of extensions: 3573796
Number of successful extensions: 62027
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61950
Number of HSP's gapped (non-prelim): 77
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)