ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63j17 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 193 bits (491), Expect = 2e-49 Identities = 97/98 (98%), Positives = 97/98 (98%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 LQNKTAFTTKE YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK Sbjct: 854 LQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 913 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV Sbjct: 914 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 155 bits (392), Expect = 7e-38 Identities = 80/98 (81%), Positives = 88/98 (89%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 L NKTAFTTK+ YGK EREAQWA AQRTLHGLQ PE + LFN+K+SYRELSEIAEQAK Sbjct: 857 LDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEATN--LFNEKNSYRELSEIAEQAK 914 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAE+ARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 915 RRAEMARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 151 bits (382), Expect = 1e-36 Identities = 76/98 (77%), Positives = 86/98 (87%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 L+NKTAFTTK+ YGK EREAQWA AQRTLHGLQ E + +FN+K+SY ELS+IAEQAK Sbjct: 853 LENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAE--KNNIFNEKNSYSELSQIAEQAK 910 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAE+ RLRE+NTLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 911 RRAEVVRLREINTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 146 bits (369), Expect = 3e-35 Identities = 71/98 (72%), Positives = 87/98 (88%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 ++N+TAFTTK+ YG+GEREAQWA AQRTLHGL+ PE ++F D ++Y ELSEIAEQAK Sbjct: 856 IENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPE----SMFEDTATYTELSEIAEQAK 911 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 +RAE+ARLRE++TLKGHVESVVKLKGLDID +NQ+YTV Sbjct: 912 KRAEVARLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 145 bits (366), Expect = 7e-35 Identities = 72/98 (73%), Positives = 86/98 (87%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 ++NKTAFT+K+ YGKGEREAQWA AQRTLHGLQ + + +FNDKS+YRELSEIA+QAK Sbjct: 859 IENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSD--MFNDKSTYRELSEIADQAK 916 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAE+ARLRE +TLKGHVESVVK KGLDI+ I Q+YT+ Sbjct: 917 RRAEVARLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 142 bits (359), Expect = 5e-34 Identities = 74/96 (77%), Positives = 81/96 (84%) Frame = -2 Query: 538 NKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRR 359 N+TAFTTK+ YG GEREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKRR Sbjct: 855 NRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKEDVN--IFPEKGSYRELSEIAEQAKRR 912 Query: 358 AEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 AEIARLREL+TLKGHVESV KLKGLDIDT +YTV Sbjct: 913 AEIARLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 142 bits (358), Expect = 6e-34 Identities = 75/98 (76%), Positives = 82/98 (83%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 + KTAFTTK+ YGKGEREAQWA AQRTLHGL PE +FND + ELSEIAEQAK Sbjct: 857 INQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE----AMFNDNKN--ELSEIAEQAK 910 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAE+ARLREL+TLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 911 RRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 137 bits (345), Expect = 2e-32 Identities = 74/97 (76%), Positives = 82/97 (84%) Frame = -2 Query: 541 QNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 362 +NKTAFT K+ YGK EREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKR Sbjct: 854 ENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKEAVN--IFPEKGSYRELSEIAEQAKR 911 Query: 361 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RAEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 912 RAEIARLRELHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 129 bits (325), Expect = 4e-30 Identities = 63/98 (64%), Positives = 82/98 (83%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 ++ + AFT K+ +GK +RE QWA AQRTLHGLQ P+P +F++ +++ EL+++AE+AK Sbjct: 862 IEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAK 918 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 919 RRAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 129 bits (325), Expect = 4e-30 Identities = 64/98 (65%), Positives = 82/98 (83%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 L+ + AFT K+ +GK RE QWA AQRTLHGLQ P+P +F++ +++ EL+++AE+AK Sbjct: 862 LEQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAK 918 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 919 RRAEIARLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 129 bits (324), Expect = 5e-30 Identities = 70/98 (71%), Positives = 80/98 (81%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 + N+TAFTTK+ YG EREAQWA AQRTLHGLQ E A+ + ++ YRELSEIA QAK Sbjct: 854 IDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTETAN--VVPERGGYRELSEIANQAK 911 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 912 RRAEIARLRELHTLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 126 bits (317), Expect = 3e-29 Identities = 63/97 (64%), Positives = 80/97 (82%) Frame = -2 Query: 541 QNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKR 362 + + AFT K+ +GK +RE QWA AQRTLHGLQ P+ LF++ +++ EL+++AE+AKR Sbjct: 864 ERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTK---LFSEATNFNELNQLAEEAKR 920 Query: 361 RAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RAEIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 921 RAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 126 bits (316), Expect = 5e-29 Identities = 63/98 (64%), Positives = 81/98 (82%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 L+ + AFT K+ +GK +RE QWA AQRTLHGLQ P+ LF++ +++ EL+++AE+AK Sbjct: 610 LEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIK---LFSEATNFNELNQLAEEAK 666 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIAR REL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 667 RRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 125 bits (315), Expect = 6e-29 Identities = 62/98 (63%), Positives = 81/98 (82%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 ++ + AFT ++ +GK +RE QWA AQRTLHGLQAP+ +F +++ + ELS++AE+AK Sbjct: 862 IEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAK---MFPERTHFNELSQMAEEAK 918 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 919 RRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 125 bits (313), Expect = 1e-28 Identities = 62/98 (63%), Positives = 80/98 (81%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 ++ + AFT ++ +GK +RE QWA AQRTLHGLQAP+ +F D++ EL+++AE+AK Sbjct: 866 IEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTK---MFTDRTHVSELNQMAEEAK 922 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 923 RRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 92.8 bits (229), Expect = 6e-19 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 1/99 (1%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 ++ +TA T K+ +G+ ER A WAT +RT HGL+ + + +++S EL+ +AE+AK Sbjct: 867 VEGRTALTGKKNFGQEERMAAWATEKRTQHGLETGQKPVY----ERNSATELNNMAEEAK 922 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTIN-QNYTV 251 RRAEIAR+REL TLKG VES KLKG D++ N NYT+ Sbjct: 923 RRAEIARMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 60.5 bits (145), Expect = 3e-09 Identities = 39/98 (39%), Positives = 53/98 (54%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 L KTAFT K+ YGK + +QR S + + S S IAEQ + Sbjct: 861 LDRKTAFTYKKDYGKDDGSPNVTISQR-----------SRSAEELRGSRSRASWIAEQTR 909 Query: 364 RRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 251 RRAEIARL E++++ H+ESV+KLK +D I +TV Sbjct: 910 RRAEIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 44.3 bits (103), Expect = 2e-04 Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 8/102 (7%) Frame = -2 Query: 538 NKTAFTTKEXYGKGER-----EAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAE 374 NK K +GE E Q Q L +Q PEPA L D REL E Sbjct: 415 NKELQNMKRLLDQGEDLRHGLETQVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVL 474 Query: 373 QAKRRAE---IARLRELNTLKGHVESVVKLKGLDIDTINQNY 257 + K+R E R REL LKG ++ V + +++ + Q Y Sbjct: 475 EGKQRVEEQLRLRERELTALKGALKEEVASRDQEVEHVRQQY 516
>PMA_AVESA (Q7M290) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| (Fragments) Length = 110 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/38 (68%), Positives = 27/38 (71%) Frame = -2 Query: 478 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 A A +TLHGLQAPE S L NDK ELSEIAEQAK Sbjct: 77 APALKTLHGLQAPESTSLNLPNDK----ELSEIAEQAK 110
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 35.4 bits (80), Expect = 0.11 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Frame = -2 Query: 544 LQNKTAFTTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 365 LQN +E + EAQ Q L Q+P+ +L D REL E + K Sbjct: 412 LQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGK 471 Query: 364 RRAE---IARLRELNTLKGHVESVVKLKGLDIDTINQNY 257 +R E R REL LKG ++ V +++ + Y Sbjct: 472 QRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQY 510
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 30.8 bits (68), Expect = 2.6 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Frame = -3 Query: 543 YRTRLLSPPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHS------STTRAATVSSLR 382 + +R PP+R + GR S P R + SR + S S +R+ T S R Sbjct: 99 HHSRRGPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSR 158 Query: 381 SLSKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTK 262 S SK R R + SS+ SR SR+ + P++K Sbjct: 159 STSKSRSARRSKS-KSSSVSRSRSRSRSRSRSRSPPPTSK 197
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 30.4 bits (67), Expect = 3.4 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Frame = -3 Query: 543 YRTRLLSPPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHS------STTRAATVSSLR 382 + +R PP+R GR S P R + SR + S S +R+ T S R Sbjct: 98 HHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSR 157 Query: 381 SLSKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTKTTP 253 S SK R R + SS+ SR SR+ + P +K P Sbjct: 158 STSKSRSARRSKS-KSSSVSRSRSRSRSRSRSRSPPPVSKREP 199
>ASPP2_HUMAN (Q13625) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53-binding protein 2) (p53BP2) (53BP2) (Bcl2-binding protein) (Bbp) (NY-REN-51 antigen) Length = 1128 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 478 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 299 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 150 ATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQE-----AKLKKVRALKGHVEQKR 204 Query: 298 KLKGLDIDTINQ 263 G ++ I Q Sbjct: 205 LSNGKLVEEIEQ 216
>GCM2_MOUSE (O09102) Chorion-specific transcription factor GCMb (Glial cells| missing homolog 2) (GCM motif protein 2) (mGCMb) Length = 504 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = -2 Query: 460 LHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLD 281 +H PE S T + R+++ + KRR+E R ++GH+ S L+ + Sbjct: 156 VHDHPRPESKSETEGRRSALKRQMASFYQPQKRRSEEPEARSTQDIRGHLNSTAALEPTE 215 Query: 280 I 278 + Sbjct: 216 L 216
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -1 Query: 266 PKLHRVRNLGIGPNNMTSVLERDWNG 189 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>VE2_HPV08 (P06422) Regulatory protein E2| Length = 498 Score = 30.0 bits (66), Expect = 4.4 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Frame = -3 Query: 522 PPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHSSTTRAAT-VSSLRSLSKPREELRLQ 346 P R + R S HR S + + LSR+ STT + + SSL +PR R + Sbjct: 252 PSSRTRPQKEQRRSRSRHRTRSRS-RSLSRVRAVGSTTVSRSRSSSLTKAVRPRSRSRSR 310 Query: 345 G*GSSTHSR--GTLSPW*SSRALTSTPSTKT 259 G ++T R G SP R+ + +PST T Sbjct: 311 GRATATSRRRAGRGSPR-RRRSTSRSPSTNT 340
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 5.8 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -1 Query: 308 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 183 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 29.6 bits (65), Expect = 5.8 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = -2 Query: 505 GKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYREL-SEIAEQAKRRAEIARLRELN 329 GK R + + RT P P SH+ +++SS+R S ++ +R+ RE Sbjct: 91 GKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDRRKVRDKEKREKE 150 Query: 328 TLKGHVESVVKLKGLDIDTI 269 KG + V +K D I Sbjct: 151 KDKGKDKEVHSIKRGDSGNI 170
>ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53BP2) (53BP2) (Fragment) Length = 1088 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 478 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 299 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 110 ATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQE-----AKLKKVRALKGHVEQKR 164 Query: 298 KLKGLDIDTINQ 263 G ++ I Q Sbjct: 165 LSNGKLVEEIEQ 176
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.3 bits (64), Expect = 7.6 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 15/112 (13%) Frame = -3 Query: 543 YRTRLLSPPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHS------STTRAATVSSLR 382 + +R PP+R GR S P R + SR + S S +R+ T S R Sbjct: 98 HHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSR 157 Query: 381 SLSKPREELRLQG*GSS---------THSRGTLSPW*SSRALTSTPSTKTTP 253 S SK R R + SS + SR P S R S +K+ P Sbjct: 158 STSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPP 209
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 29.3 bits (64), Expect = 7.6 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 15/112 (13%) Frame = -3 Query: 543 YRTRLLSPPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHS------STTRAATVSSLR 382 + +R PP+R GR S P R + SR + S S +R+ T S R Sbjct: 98 HHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSR 157 Query: 381 SLSKPREELRLQG*GSS---------THSRGTLSPW*SSRALTSTPSTKTTP 253 S SK R R + SS + SR P S R S +K+ P Sbjct: 158 STSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPP 209
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 29.3 bits (64), Expect = 7.6 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 15/112 (13%) Frame = -3 Query: 543 YRTRLLSPPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHS------STTRAATVSSLR 382 + +R PP+R GR S P R + SR + S S +R+ T S R Sbjct: 98 HHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSR 157 Query: 381 SLSKPREELRLQG*GSS---------THSRGTLSPW*SSRALTSTPSTKTTP 253 S SK R R + SS + SR P S R S +K+ P Sbjct: 158 STSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPP 209
>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 828 Score = 29.3 bits (64), Expect = 7.6 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -2 Query: 523 TTKEXYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIAR 344 T KE Y K ++++W + T++ L+ +L S + + E+A ++ A Sbjct: 439 TVKEEYNKTVKQSEWDEMKATVNTLR-------SLNKTMKSQMQRMKDREKASQKEHSAV 491 Query: 343 LRELNTLKGHVESVV 299 EL TLK +E V Sbjct: 492 KTELKTLKDQLEKSV 506
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 29.3 bits (64), Expect = 7.6 Identities = 26/90 (28%), Positives = 39/90 (43%) Frame = -3 Query: 522 PPKRXTAKVRGRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSSLRSLSKPREELRLQG 343 P T++ +HS +PHR L+ T SS+T VSS S+S Sbjct: 126 PTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSST---DVSSSDSVSTS-------- 174 Query: 342 *GSSTHSRGTLSPW*SSRALTSTPSTKTTP 253 SS+++ T+S +TS S+ TP Sbjct: 175 -ASSSNASNTVS-------VTSPASSSATP 196
>RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = -2 Query: 505 GKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYREL-SEIAEQAKRRAEIARLRELN 329 GK R + + RT P P SH+ +++SS+R S ++ +R+ RE Sbjct: 91 GKSYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDRRKVRDKEKREKE 150 Query: 328 TLKGHVESVVKLKGLDIDTI 269 KG + +K D I Sbjct: 151 KDKGKDKEAHTIKRGDCGNI 170
>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1 Length = 2601 Score = 28.9 bits (63), Expect = 9.9 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -3 Query: 423 HSSTTRAATVSSLRSLSKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTKTTPCEE 244 HS + R+A ++R+ S +R GS+ H G S S R + PS+ +TP Sbjct: 1856 HSRSVRSAP--AMRAASAGARSVRSAQSGSTGHRAGAFSVAGSVRQPSGPPSSVSTPAAI 1913 Query: 243 FGHWTKQHD-IRIGAR 199 G Q D +R+ AR Sbjct: 1914 RGLTRDQFDAVRVRAR 1929 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,764,703 Number of Sequences: 219361 Number of extensions: 1584392 Number of successful extensions: 4102 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4083 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
