ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186390.2| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
2dbj|AK060475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
3dbj|AK059284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
4dbj|AK106623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
5gb|BT018231.1| Zea mays clone EL01N0562D11.c mRNA sequence 56 1e-04
6gb|AY109152.1| Zea mays PCO089203 mRNA sequence 56 1e-04
7gb|AY108527.1| Zea mays PCO089202 mRNA sequence 56 1e-04
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 geno... 44 0.39
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.39
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
14gb|AY029303.1| Strongylocentrotus purpuratus ADAM precursor, mRN... 40 6.2
15ref|XM_743971.1| Aspergillus fumigatus Af293 Rab geranylgeranylt... 40 6.2
16gb|AC011341.3| Homo sapiens chromosome 5 clone CTC-269F1, comple... 40 6.2
17gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, comple... 40 6.2
18gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complet... 40 6.2
19ref|NM_214470.1| Strongylocentrotus purpuratus ADAM (LOC373195),... 40 6.2
20gb|AY487776.1| Natrix tessellata isolate T299 NADH dehydrogenase... 40 6.2
21gb|AY487773.1| Natrix tessellata isolate T157 NADH dehydrogenase... 40 6.2
22gb|AY870641.1| Natrix tessellata voucher CAS 182901 NADH dehydro... 40 6.2 
>ref|NM_186390.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 667

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 386 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 445
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 266 tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 207

                   
Query: 446 ttgaaggt 453
           ||||||||
Sbjct: 206 ttgaaggt 199



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 194 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 253
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 458 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 399

                                                        
Query: 254 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 298
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 398 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 354
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>dbj|AK060475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F03, full
           insert sequence
          Length = 678

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 386 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 445
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 266 tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 207

                   
Query: 446 ttgaaggt 453
           ||||||||
Sbjct: 206 ttgaaggt 199



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 194 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 253
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 458 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 399

                                                        
Query: 254 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 298
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 398 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 354
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>dbj|AK059284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D07, full
           insert sequence
          Length = 566

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 386 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 445
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 97  tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 38

                   
Query: 446 ttgaaggt 453
           ||||||||
Sbjct: 37  ttgaaggt 30



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 194 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 253
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 289 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 230

                                                        
Query: 254 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 298
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 229 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 185
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>dbj|AK106623.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B04, full
           insert sequence
          Length = 678

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 404 agcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggc 456
           ||||||||||  |||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 289 agcttccccttagtgatgcttttatccgtggatgcggagatcttgaaggtggc 237



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 260 gtgtaagaacctggtggagtgattgatggtaa 291
           ||||||||||||||||| ||||||||||||||
Sbjct: 433 gtgtaagaacctggtggggtgattgatggtaa 402
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>gb|BT018231.1| Zea mays clone EL01N0562D11.c mRNA sequence
          Length = 606

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 401 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggc 456
           |||||||||||||    |||| |||||||||| ||||||||||||||||| |||||
Sbjct: 183 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggc 128



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 ccaatgctgaacccgaaggagatgcagct 219
           ||||||||||| ||||| |||||||||||
Sbjct: 393 ccaatgctgaagccgaacgagatgcagct 365
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>gb|AY109152.1| Zea mays PCO089203 mRNA sequence
          Length = 811

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 401 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggc 456
           |||||||||||||    |||| |||||||||| ||||||||||||||||| |||||
Sbjct: 273 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggc 218



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 187 gaagccaatgctgaacccgaaggagatgcagctca 221
           |||||| |||||||||||||| |||||||||||||
Sbjct: 487 gaagccgatgctgaacccgaacgagatgcagctca 453
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>gb|AY108527.1| Zea mays PCO089202 mRNA sequence
          Length = 666

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 401 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggc 456
           |||||||||||||    |||| |||||||||| ||||||||||||||||| |||||
Sbjct: 262 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggc 207



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 ccaatgctgaacccgaaggagatgcagct 219
           ||||||||||| ||||| |||||||||||
Sbjct: 472 ccaatgctgaagccgaacgagatgcagct 444
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 194     atgctgaacccgaaggagatgcagctcaattcctcatc 231
               |||||||||||||| |||||||||||||  ||||||||
Sbjct: 3233684 atgctgaacccgaacgagatgcagctcagctcctcatc 3233647



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 429     cagtggaagcggagatcttgaaggt 453
               |||||||||||||||||||||||||
Sbjct: 3231342 cagtggaagcggagatcttgaaggt 3231318



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 386     tatttaacatcaataaccagcttccc 411
               ||||| ||||||||||||||||||||
Sbjct: 3233350 tatttcacatcaataaccagcttccc 3233325
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 194    atgctgaacccgaaggagatgcagctcaattcctcatc 231
              |||||||||||||| |||||||||||||  ||||||||
Sbjct: 148674 atgctgaacccgaacgagatgcagctcagctcctcatc 148637



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 429    cagtggaagcggagatcttgaaggt 453
              |||||||||||||||||||||||||
Sbjct: 146332 cagtggaagcggagatcttgaaggt 146308



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 386    tatttaacatcaataaccagcttccc 411
              ||||| ||||||||||||||||||||
Sbjct: 148340 tatttcacatcaataaccagcttccc 148315
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 194   atgctgaacccgaaggagatgcagctcaattcctcatc 231
             |||||||||||||| |||||||||||||  ||||||||
Sbjct: 43377 atgctgaacccgaacgagatgcagctcagctcctcatc 43340



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 429   cagtggaagcggagatcttgaaggt 453
             |||||||||||||||||||||||||
Sbjct: 41035 cagtggaagcggagatcttgaaggt 41011



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 386   tatttaacatcaataaccagcttccc 411
             ||||| ||||||||||||||||||||
Sbjct: 43043 tatttcacatcaataaccagcttccc 43018
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>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
             sequence
          Length = 145507

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 431   gtggaagcggagatcttgaaggtggc 456
             ||||| ||||||||||||||||||||
Sbjct: 88332 gtggatgcggagatcttgaaggtggc 88307
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 431      gtggaagcggagatcttgaaggtggc 456
                ||||| ||||||||||||||||||||
Sbjct: 32436204 gtggatgcggagatcttgaaggtggc 32436179
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 431      gtggaagcggagatcttgaaggtggc 456
                ||||| ||||||||||||||||||||
Sbjct: 32526714 gtggatgcggagatcttgaaggtggc 32526689
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>gb|AY029303.1| Strongylocentrotus purpuratus ADAM precursor, mRNA, complete cds
          Length = 3072

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   acccacgagtgttacacaga 84
            ||||||||||||||||||||
Sbjct: 2068 acccacgagtgttacacaga 2049
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>ref|XM_743971.1| Aspergillus fumigatus Af293 Rab geranylgeranyltransferase, subunit
           beta (Afu7g04460) partial mRNA
          Length = 915

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 241 gagcatcttcatctgaatggtgta 264
           |||||||||| |||||||||||||
Sbjct: 40  gagcatcttcgtctgaatggtgta 63
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>gb|AC011341.3| Homo sapiens chromosome 5 clone CTC-269F1, complete sequence
          Length = 51684

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gggcaaggaagccaatgctg 199
             ||||||||||||||||||||
Sbjct: 30310 gggcaaggaagccaatgctg 30291
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>gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, complete sequence
          Length = 184589

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  gggcaaggaagccaatgctg 199
            ||||||||||||||||||||
Sbjct: 7207 gggcaaggaagccaatgctg 7226
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>gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complete sequence
          Length = 137457

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gagcatcttcatctgaatgg 260
              ||||||||||||||||||||
Sbjct: 118102 gagcatcttcatctgaatgg 118121
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>ref|NM_214470.1| Strongylocentrotus purpuratus ADAM (LOC373195), mRNA
          Length = 3072

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   acccacgagtgttacacaga 84
            ||||||||||||||||||||
Sbjct: 2068 acccacgagtgttacacaga 2049
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>gb|AY487776.1| Natrix tessellata isolate T299 NADH dehydrogenase subunit 2 (ND2)
           gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 385 atatttaacatcaataacca 404
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
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>gb|AY487773.1| Natrix tessellata isolate T157 NADH dehydrogenase subunit 2 (ND2)
           gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 385 atatttaacatcaataacca 404
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
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>gb|AY870641.1| Natrix tessellata voucher CAS 182901 NADH dehydrogenase subunit 2
           (ND2) gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 385 atatttaacatcaataacca 404
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,593,796
Number of Sequences: 3902068
Number of extensions: 3593796
Number of successful extensions: 71063
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70963
Number of HSP's gapped (non-prelim): 97
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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