ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63j12 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 83.2 bits (204), Expect = 1e-16 Identities = 40/51 (78%), Positives = 45/51 (88%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 177 RPVVF+LA GEAGV VL+MLRDEFELTMALSGC SL++ITRNH+VTE D Sbjct: 309 RPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD 359
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 80.1 bits (196), Expect = 1e-15 Identities = 39/51 (76%), Positives = 43/51 (84%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 177 RPVVFSLA GEAGV VL+MLRDEFELTMALSGC SL +I+RNH+ TE D Sbjct: 309 RPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD 359
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 74.7 bits (182), Expect = 5e-14 Identities = 35/51 (68%), Positives = 42/51 (82%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 177 RPVVFSLA GEAGV VL+M+RDEFELTMALSGC SL +I+R+H+ + D Sbjct: 309 RPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>HAOX2_HUMAN (Q9NYQ3) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 351 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHV 192 RP+++ LA GE GV VL +L +EF +MAL+GC S+A+I RN V Sbjct: 301 RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLV 346
>HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHV 192 RP+V+ LA GE GV +VL++L++EF L MALSGC ++ I + V Sbjct: 315 RPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360
>HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/46 (47%), Positives = 33/46 (71%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHV 192 RP+++ LA GE GV +VL++L++EF L MALSGC ++ I + V Sbjct: 315 RPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360
>HAOX2_MOUSE (Q9NYQ2) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Medium chain alpha-hydroxy acid oxidase) (Medium-chain L-2-hydroxy acid oxidase) Length = 353 Score = 47.4 bits (111), Expect = 9e-06 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADIT 204 RP+++ LA GE GV VL +L++E MALSGC S+A+I+ Sbjct: 303 RPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344
>LLDD_ERWCT (Q6DAY3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 386 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/47 (46%), Positives = 32/47 (68%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R V++LA AGEAGV N+L ++ E + M L+G S+ADIT + +V Sbjct: 330 RAFVYALAAAGEAGVVNLLNLIEKEMRVAMTLTGAKSIADITSDSLV 376
>LLDD_PSEPK (Q88DT3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/49 (40%), Positives = 34/49 (69%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTE 183 R +++LAV G+AGV N+L++ E + M L+G S+++ITR+ +V E Sbjct: 330 RAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378
>LLDD_PSEAE (Q9HV37) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/49 (40%), Positives = 33/49 (67%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTE 183 R V++LA AGEAGV N+L+++ E + M L+G S+ +I+ + +V E Sbjct: 330 RAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378
>LLDD_SHISS (Q3YVX0) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/47 (38%), Positives = 35/47 (74%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+++IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
>LLDD_SHIFL (Q83PP7) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/47 (38%), Positives = 35/47 (74%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+++IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
>LLDD_SHIBS (Q31V17) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/47 (38%), Positives = 35/47 (74%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+++IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
>LLDD_ECOLI (P33232) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/47 (38%), Positives = 35/47 (74%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+++IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
>LLDD_ECOL6 (Q8FCB1) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/47 (38%), Positives = 35/47 (74%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+++IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
>LLDD_ECO57 (Q8XDF7) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/47 (38%), Positives = 35/47 (74%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+++IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
>LLDD_YERPS (Q66C32) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 44.3 bits (103), Expect = 8e-05 Identities = 20/44 (45%), Positives = 29/44 (65%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRN 198 R V++LA AGEAGV N+L ++ E + M L+G +ADI R+ Sbjct: 330 RAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373
>LLDD_YERPE (Q8ZFV8) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 44.3 bits (103), Expect = 8e-05 Identities = 20/44 (45%), Positives = 29/44 (65%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRN 198 R V++LA AGEAGV N+L ++ E + M L+G +ADI R+ Sbjct: 330 RAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRD 373
>LLDD_SHIDS (Q329P9) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 396 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/47 (38%), Positives = 34/47 (72%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA AG+AGV+N+L ++ E ++ M L+G S+ +IT++ +V Sbjct: 330 RAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSINEITQDSLV 376
>LLDD_XANAC (Q8PR33) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 388 Score = 43.5 bits (101), Expect = 1e-04 Identities = 19/42 (45%), Positives = 30/42 (71%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADIT 204 R V++LA AG+AGV N+L ++ E + M L+G +S+ADI+ Sbjct: 330 RAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIADIS 371
>HAOX2_RAT (Q07523) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 352 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADIT 204 RP+++ LA GE GV VL +L E M LSGC S+A+I+ Sbjct: 302 RPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 343
>LLDD_XANC5 (Q3BZH2) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 388 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/42 (42%), Positives = 30/42 (71%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADIT 204 R V++LA AG+AGV N+L ++ E + M L+G +S+A+I+ Sbjct: 330 RAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIAEIS 371
>LLDD_VIBPA (Q87G18) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 379 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/47 (38%), Positives = 30/47 (63%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R V++LA G AGV N+L + E + M L+G ++AD++R+ +V Sbjct: 330 RSFVYALAAQGGAGVENLLDLYDKEMRVAMTLTGAKTIADLSRDSLV 376
>LLDD_BARHE (Q6G4R2) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 383 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/48 (33%), Positives = 31/48 (64%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVT 186 R V++LA AGE GV++++ + +E + M L+G ++ +ITR + + Sbjct: 330 RAFVYALAAAGEKGVAHLIDLFANEMRVAMTLTGVRAIKEITRESLAS 377
>LLDD_ACIAD (Q6FFS1) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 384 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/47 (36%), Positives = 29/47 (61%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 R +++LA G GVSN+L ++ E + M L+G ++ADI + +V Sbjct: 330 RAFIYALAAQGGQGVSNLLDLIDKEMRVAMTLTGAKTIADINESCLV 376
>LLDD_CAUCR (Q9A943) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 383 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -1 Query: 329 RPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEADKFG 168 R ++LA GEAGV+ +L ++ E + MAL+G +A I + + G Sbjct: 330 RAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASINETILAERVPRAG 383
>IDI2_METBF (Q46CL4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 365 Score = 31.6 bits (70), Expect = 0.52 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 308 AVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 A+ G+ V VL + DEF + M L GC ++ D+ VV Sbjct: 300 ALEGKESVVRVLSRMLDEFRIAMFLCGCANIQDLRNAPVV 339
>TUP12_SCHPO (Q9UUG8) Transcriptional repressor tup12| Length = 586 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -3 Query: 144 WNQIESAPTSSPPLLIQDLHT*GHPCMIC 58 W + P PP+ +Q LHT H +IC Sbjct: 263 WTVTSNVPNKEPPISVQLLHTLEHTSVIC 291
>IDI2_METMA (Q8PW37) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 365 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -1 Query: 308 AVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 ++ G+ V VL + +EF+ M L GC ++ D+ + VV Sbjct: 300 SLEGKESVVRVLSCMLEEFKAAMFLCGCGNIKDLHNSPVV 339
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 234 ERHGQLELVAQHLEHVAHPGLPGHRQREHH 323 E G+ EL + HVA PGHR RE H Sbjct: 563 EEGGEEELTVKAGHHVASHPPPGHRSREGH 592
>UL84_HCMVA (P16727) 65 kDa early nonstructural protein (UL84 protein)| Length = 586 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -2 Query: 160 RPACNLEPNRVGTYVLAAVIDPRLT 86 RPA +L P R G ++L +VID +LT Sbjct: 197 RPAFSLFPARPGCHILRSVIDQQLT 221
>UL84_HCMVT (P29839) 65 kDa early nonstructural protein (UL84 protein)| Length = 587 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -2 Query: 160 RPACNLEPNRVGTYVLAAVIDPRLT 86 RPA +L P R G ++L +VID +LT Sbjct: 198 RPAFSLFPARPGCHILRSVIDQQLT 222
>IDI2_BACSU (P50740) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/46 (23%), Positives = 28/46 (60%) Frame = -1 Query: 314 SLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 177 +L +GE G+ ++++ +E +L M + G ++AD+ + +V + + Sbjct: 286 ALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGE 331
>IDI2_METKA (Q8TX99) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 365 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/46 (26%), Positives = 25/46 (54%) Frame = -1 Query: 326 PVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 189 PV+ + G G LK + E ++ M ++GC+S+ +++ +V Sbjct: 290 PVLRKVLAEGVRGCVRFLKSIAREVKIAMLMAGCSSVEEMSSVPIV 335
>MET17_KLULA (Q92441) Protein MET17 [Includes: O-acetylhomoserine sulfhydrylase| (EC 2.5.1.49) (OAH sulfhydrylase) (Homocysteine synthase); O-acetylserine sulfhydrylase (EC 2.5.1.47) (OAS sulfhydrylase)] Length = 443 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Frame = +3 Query: 234 ERHGQLEL-VAQHLEH------VAHPGLPGHRQREH 320 ERHG L +AQ+LE V++PGLP H E+ Sbjct: 295 ERHGSNALKLAQYLESSPYVSWVSYPGLPSHSHHEN 330
>IDI2_BACLD (Q65I10) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 349 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/53 (20%), Positives = 29/53 (54%) Frame = -1 Query: 311 LAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEADKFGVMPSR 153 L +GE ++ ++ L ++F+ M + GC ++ + + +V + D + + +R Sbjct: 287 LTASGEEALAAEIESLIEDFKRIMTVLGCRTIEQLKKAPLVIKGDTYHWLKAR 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,499,836 Number of Sequences: 219361 Number of extensions: 606405 Number of successful extensions: 1516 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1516 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
