ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63j12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA 220 2e-54
2ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group... 220 2e-54
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 220 2e-54
4dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 220 2e-54
5dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 220 2e-54
6dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 2e-54
7dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 2e-54
8dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 2e-54
9ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predic... 131 2e-27
10emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4,... 131 2e-27
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
12dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
13dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
14gb|AY108197.1| Zea mays PCO065133 mRNA sequence 131 2e-27
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 6e-27
16gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 129 6e-27
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 6e-27
18dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
19dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
20dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
21gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA... 101 1e-18
22gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) m... 56 7e-05
23dbj|AK068129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
24gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.1
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
26dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
27dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.1
29ref|NM_180253.1| Arabidopsis thaliana glycolate oxidase/ oxidore... 40 4.4
30ref|NM_180254.1| Arabidopsis thaliana glycolate oxidase/ oxidore... 40 4.4
31ref|NM_001035617.1| Arabidopsis thaliana glycolate oxidase/ oxid... 40 4.4
32ref|NM_112302.2| Arabidopsis thaliana glycolate oxidase/ oxidore... 40 4.4
33gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 4.4
34gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 4.4
35gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, comple... 40 4.4
36gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 4.4
37emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene) 40 4.4
38emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransfera... 40 4.4
39emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4... 40 4.4
40gb|AY081566.1| Arabidopsis thaliana glycolate oxidase (At3g14420... 40 4.4
41gb|AY074830.1| Arabidopsis thaliana AT3g14420/MOA2_2 mRNA, compl... 40 4.4
42gb|AY065122.1| Arabidopsis thaliana glycolate oxidase (At3g14420... 40 4.4
43gb|AF428328.1|AF428328 Arabidopsis thaliana AT3g14420/MOA2_2 mRN... 40 4.4
44gb|AF428396.1|AF428396 Arabidopsis thaliana AT3g14420/MOA2_2 mRN... 40 4.4
45dbj|AK220934.1| Arabidopsis thaliana mRNA for glycolate oxidase ... 40 4.4
46gb|AY053412.1| Arabidopsis thaliana AT3g14420/MOA2_2 mRNA, compl... 40 4.4
47dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.4
48dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.4
49gb|AF061070.1|AF061070 Pseudomonas stutzeri Orf117 (orf117), Orf... 40 4.4
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.4 
>ref|XM_476669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1439

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                        
Query: 147  ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
            ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 1176 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 1117

                                                                        
Query: 207  gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
            |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1116 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 1057

                                                                        
Query: 267  catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
            |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1056 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 997

               
Query: 327  cct 329
            |||
Sbjct: 996  cct 994
to top
>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA
          Length = 1501

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                        
Query: 147  ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
            ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 1217 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 1158

                                                                        
Query: 207  gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
            |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1157 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 1098

                                                                        
Query: 267  catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
            |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1097 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 1038

               
Query: 327  cct 329
            |||
Sbjct: 1037 cct 1035
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                           
Query: 147     ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
               ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 2833211 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 2833152

                                                                           
Query: 207     gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
               |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 2833151 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 2833092

                                                                           
Query: 267     catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
               |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 2833091 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 2833032

                  
Query: 327     cct 329
               |||
Sbjct: 2833031 cct 2833029
to top
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1364A02
          Length = 137933

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                          
Query: 147    ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
              ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 136772 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 136713

                                                                          
Query: 207    gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
              |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 136712 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 136653

                                                                          
Query: 267    catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
              |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 136652 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 136593

                 
Query: 327    cct 329
              |||
Sbjct: 136592 cct 136590
to top
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0050B07
          Length = 142134

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                        
Query: 147  ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
            ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 3498 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 3439

                                                                        
Query: 207  gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
            |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 3438 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 3379

                                                                        
Query: 267  catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
            |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 3378 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 3319

               
Query: 327  cct 329
            |||
Sbjct: 3318 cct 3316
to top
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full
            insert sequence
          Length = 1738

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                        
Query: 147  ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
            ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 1475 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 1416

                                                                        
Query: 207  gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
            |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1415 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 1356

                                                                        
Query: 267  catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
            |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1355 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 1296

               
Query: 327  cct 329
            |||
Sbjct: 1295 cct 1293
to top
>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full
            insert sequence
          Length = 1439

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                        
Query: 147  ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
            ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 1176 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 1117

                                                                        
Query: 207  gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
            |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1116 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 1057

                                                                        
Query: 267  catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
            |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1056 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 997

               
Query: 327  cct 329
            |||
Sbjct: 996  cct 994
to top
>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full
            insert sequence
          Length = 1501

 Score =  220 bits (111), Expect = 2e-54
 Identities = 165/183 (90%)
 Strand = Plus / Minus

                                                                        
Query: 147  ttacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggt 206
            ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 1217 ttacaagcgagacggcatgacgccgagcttgtcggcctcggtgatgacgtggttgcgggt 1158

                                                                        
Query: 207  gatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcag 266
            |||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1157 gatgtcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcgcggag 1098

                                                                        
Query: 267  catcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccgg 326
            |||||  |||||||| |  || ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1097 catctgcagcacgttccggactccggcctcccccgccgccgccagcgagaacaccaccgg 1038

               
Query: 327  cct 329
            |||
Sbjct: 1037 cct 1035
to top
>ref|XM_473942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                        
Query: 184  tcggtgacgacgtggttgcgggtgatgtctgctagcgagttgcagccgctgagcgccatg 243
            ||||||| |||||||||||||||||| || || |||||  |||| |||||||||||||||
Sbjct: 1073 tcggtgatgacgtggttgcgggtgatctcggccagcgacgtgcatccgctgagcgccatg 1014

                                                                        
Query: 244  gtcagctcgaactcgtcgcgcagcatcttgagcacgttgctcaccccggcctccccggcc 303
            || ||||| | ||||||||| |||||||  ||||| || ||||| |||||||| ||| ||
Sbjct: 1013 gtgagctccagctcgtcgcggagcatctgcagcaccttcctcacgccggcctcgccgtcc 954

                                      
Query: 304  accgccagcgagaacaccaccggcct 329
            || ||||||||||||| |||||||||
Sbjct: 953  acggccagcgagaacagcaccggcct 928
to top
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
             complete sequence
          Length = 187601

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                         
Query: 184   tcggtgacgacgtggttgcgggtgatgtctgctagcgagttgcagccgctgagcgccatg 243
             ||||||| |||||||||||||||||| || || |||||  |||| |||||||||||||||
Sbjct: 59399 tcggtgatgacgtggttgcgggtgatctcggccagcgacgtgcatccgctgagcgccatg 59340

                                                                         
Query: 244   gtcagctcgaactcgtcgcgcagcatcttgagcacgttgctcaccccggcctccccggcc 303
             || ||||| | ||||||||| |||||||  ||||| || ||||| |||||||| ||| ||
Sbjct: 59339 gtgagctccagctcgtcgcggagcatctgcagcaccttcctcacgccggcctcgccgtcc 59280

                                       
Query: 304   accgccagcgagaacaccaccggcct 329
             || ||||||||||||| |||||||||
Sbjct: 59279 acggccagcgagaacagcaccggcct 59254



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 86/106 (81%)
 Strand = Plus / Minus

                                                                         
Query: 224   tgcagccgctgagcgccatggtcagctcgaactcgtcgcgcagcatcttgagcacgttgc 283
             |||||||||||||||||||||| | ||| | |||||| | |||||||   ||| |||| |
Sbjct: 63427 tgcagccgctgagcgccatggtgatctccagctcgtctctcagcatccgcagcgcgttcc 63368

                                                           
Query: 284   tcaccccggcctccccggccaccgccagcgagaacaccaccggcct 329
             |||| |||||||| ||| | |  || || ||||||| |||||||||
Sbjct: 63367 tcacgccggcctcgccgtcgatggcgagggagaacagcaccggcct 63322
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                            
Query: 184      tcggtgacgacgtggttgcgggtgatgtctgctagcgagttgcagccgctgagcgccatg 243
                ||||||| |||||||||||||||||| || || |||||  |||| |||||||||||||||
Sbjct: 31726129 tcggtgatgacgtggttgcgggtgatctcggccagcgacgtgcatccgctgagcgccatg 31726070

                                                                            
Query: 244      gtcagctcgaactcgtcgcgcagcatcttgagcacgttgctcaccccggcctccccggcc 303
                || ||||| | ||||||||| |||||||  ||||| || ||||| |||||||| ||| ||
Sbjct: 31726069 gtgagctccagctcgtcgcggagcatctgcagcaccttcctcacgccggcctcgccgtcc 31726010

                                          
Query: 304      accgccagcgagaacaccaccggcct 329
                || ||||||||||||| |||||||||
Sbjct: 31726009 acggccagcgagaacagcaccggcct 31725984



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 86/106 (81%)
 Strand = Plus / Minus

                                                                            
Query: 224      tgcagccgctgagcgccatggtcagctcgaactcgtcgcgcagcatcttgagcacgttgc 283
                |||||||||||||||||||||| | ||| | |||||| | |||||||   ||| |||| |
Sbjct: 31730157 tgcagccgctgagcgccatggtgatctccagctcgtctctcagcatccgcagcgcgttcc 31730098

                                                              
Query: 284      tcaccccggcctccccggccaccgccagcgagaacaccaccggcct 329
                |||| |||||||| ||| | |  || || ||||||| |||||||||
Sbjct: 31730097 tcacgccggcctcgccgtcgatggcgagggagaacagcaccggcct 31730052
to top
>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full
            insert sequence
          Length = 1435

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                        
Query: 184  tcggtgacgacgtggttgcgggtgatgtctgctagcgagttgcagccgctgagcgccatg 243
            ||||||| |||||||||||||||||| || || |||||  |||| |||||||||||||||
Sbjct: 1142 tcggtgatgacgtggttgcgggtgatctcggccagcgacgtgcatccgctgagcgccatg 1083

                                                                        
Query: 244  gtcagctcgaactcgtcgcgcagcatcttgagcacgttgctcaccccggcctccccggcc 303
            || ||||| | ||||||||| |||||||  ||||| || ||||| |||||||| ||| ||
Sbjct: 1082 gtgagctccagctcgtcgcggagcatctgcagcaccttcctcacgccggcctcgccgtcc 1023

                                      
Query: 304  accgccagcgagaacaccaccggcct 329
            || ||||||||||||| |||||||||
Sbjct: 1022 acggccagcgagaacagcaccggcct 997
to top
>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full
            insert sequence
          Length = 1427

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                        
Query: 184  tcggtgacgacgtggttgcgggtgatgtctgctagcgagttgcagccgctgagcgccatg 243
            ||||||| |||||||||||||||||| || || |||||  |||| |||||||||||||||
Sbjct: 1146 tcggtgatgacgtggttgcgggtgatctcggccagcgacgtgcatccgctgagcgccatg 1087

                                                                        
Query: 244  gtcagctcgaactcgtcgcgcagcatcttgagcacgttgctcaccccggcctccccggcc 303
            || ||||| | ||||||||| |||||||  ||||| || ||||| |||||||| ||| ||
Sbjct: 1086 gtgagctccagctcgtcgcggagcatctgcagcaccttcctcacgccggcctcgccgtcc 1027

                                      
Query: 304  accgccagcgagaacaccaccggcct 329
            || ||||||||||||| |||||||||
Sbjct: 1026 acggccagcgagaacagcaccggcct 1001
to top
>gb|AY108197.1| Zea mays PCO065133 mRNA sequence
          Length = 1667

 Score =  131 bits (66), Expect = 2e-27
 Identities = 153/182 (84%)
 Strand = Plus / Minus

                                                                        
Query: 148  tacaagcgggacggcatgacgccgaatttgtcggcctcggtgacgacgtggttgcgggtg 207
            |||||||| ||||| ||| ||| ||  ||||||| |||||||| || ||| |||||||||
Sbjct: 1323 tacaagcgcgacgggatggcgctgagcttgtcggactcggtgatgatgtgcttgcgggtg 1264

                                                                        
Query: 208  atgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtcgcgcagc 267
            || || || || ||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1263 atttcggcgagggaggtgcagccgctgagcgccatggtgagctcgaactcgtcccgcagc 1204

                                                                        
Query: 268  atcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacaccaccggc 327
            ||    || ||||||  ||| |||||||| || ||| ||||||| |||||||||||||||
Sbjct: 1203 atgcgcaggacgttggacacgccggcctcgcccgccgccgccagggagaacaccaccggc 1144

              
Query: 328  ct 329
            ||
Sbjct: 1143 ct 1142
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 6e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                            
Query: 201      gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
                |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct: 32328113 gcgggtgatgtcggcgagcgaggtgcatccgctgagcgccatggtgagctcgaactcctc 32328054

                                                                            
Query: 261      gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
                 |||| ||||   |||||||| |||||||||||||||||  || ||||||||| ||||||
Sbjct: 32328053 ccgcatcatccgcagcacgttcctcaccccggcctccccctccgccgccagcgcgaacac 32327994

                         
Query: 321      caccggcct 329
                |||||||||
Sbjct: 32327993 caccggcct 32327985
to top
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score =  129 bits (65), Expect = 6e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                         
Query: 201   gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
             |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct: 61880 gcgggtgatgtcggcgagcgaggtgcatccgctgagcgccatggtgagctcgaactcctc 61821

                                                                         
Query: 261   gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
              |||| ||||   |||||||| |||||||||||||||||  || ||||||||| ||||||
Sbjct: 61820 ccgcatcatccgcagcacgttcctcaccccggcctccccctccgccgccagcgcgaacac 61761

                      
Query: 321   caccggcct 329
             |||||||||
Sbjct: 61760 caccggcct 61752
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 6e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                            
Query: 201      gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
                |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct: 32418623 gcgggtgatgtcggcgagcgaggtgcatccgctgagcgccatggtgagctcgaactcctc 32418564

                                                                            
Query: 261      gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
                 |||| ||||   |||||||| |||||||||||||||||  || ||||||||| ||||||
Sbjct: 32418563 ccgcatcatccgcagcacgttcctcaccccggcctccccctccgccgccagcgcgaacac 32418504

                         
Query: 321      caccggcct 329
                |||||||||
Sbjct: 32418503 caccggcct 32418495
to top
>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full
            insert sequence
          Length = 1526

 Score =  129 bits (65), Expect = 6e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                        
Query: 201  gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
            |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct: 1131 gcgggtgatgtcggcgagcgaggtgcatccgctgagcgccatggtgagctcgaactcctc 1072

                                                                        
Query: 261  gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
             |||| ||||   |||||||| |||||||||||||||||  || ||||||||| ||||||
Sbjct: 1071 ccgcatcatccgcagcacgttcctcaccccggcctccccctccgccgccagcgcgaacac 1012

                     
Query: 321  caccggcct 329
            |||||||||
Sbjct: 1011 caccggcct 1003
to top
>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full
            insert sequence
          Length = 1522

 Score =  129 bits (65), Expect = 6e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                        
Query: 201  gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
            |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct: 1127 gcgggtgatgtcggcgagcgaggtgcatccgctgagcgccatggtgagctcgaactcctc 1068

                                                                        
Query: 261  gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
             |||| ||||   |||||||| |||||||||||||||||  || ||||||||| ||||||
Sbjct: 1067 ccgcatcatccgcagcacgttcctcaccccggcctccccctccgccgccagcgcgaacac 1008

                     
Query: 321  caccggcct 329
            |||||||||
Sbjct: 1007 caccggcct 999
to top
>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full
            insert sequence
          Length = 1586

 Score =  129 bits (65), Expect = 6e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                        
Query: 201  gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
            |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct: 1191 gcgggtgatgtcggcgagcgaggtgcatccgctgagcgccatggtgagctcgaactcctc 1132

                                                                        
Query: 261  gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
             |||| ||||   |||||||| |||||||||||||||||  || ||||||||| ||||||
Sbjct: 1131 ccgcatcatccgcagcacgttcctcaccccggcctccccctccgccgccagcgcgaacac 1072

                     
Query: 321  caccggcct 329
            |||||||||
Sbjct: 1071 caccggcct 1063
to top
>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds
          Length = 1473

 Score =  101 bits (51), Expect = 1e-18
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                        
Query: 201  gcgggtgatgtctgctagcgagttgcagccgctgagcgccatggtcagctcgaactcgtc 260
            |||||||||||| || |||||| |||| ||||||| ||||||||| ||||||||||| ||
Sbjct: 1097 gcgggtgatgtcggcgagcgaggtgcatccgctgaacgccatggtgagctcgaactcctc 1038

                                                                        
Query: 261  gcgcagcatcttgagcacgttgctcaccccggcctccccggccaccgccagcgagaacac 320
             |||| ||||   |||| ||| ||||||||||||| |||  || ||||||||| ||||||
Sbjct: 1037 ccgcatcatccgcagcaggttcctcaccccggccttcccctccgccgccagcgcgaacac 978

                   
Query: 321  caccggc 327
            |||||||
Sbjct: 977  caccggc 971
to top
>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds
          Length = 1486

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 118/148 (79%)
 Strand = Plus / Minus

                                                                        
Query: 182  cctcggtgacgacgtggttgcgggtgatgtctgctagcgagttgcagccgctgagcgcca 241
            |||| |||| || ||||||||| ||||||||    ||||||  ||| || ||||| ||||
Sbjct: 1171 cctcagtgaggatgtggttgcgtgtgatgtccttgagcgagaggcatccactgagtgcca 1112

                                                                        
Query: 242  tggtcagctcgaactcgtcgcgcagcatcttgagcacgttgctcaccccggcctccccgg 301
            |||| ||||||||||| ||||| ||||| |  ||||| || ||||| || ||||| ||  
Sbjct: 1111 tggtgagctcgaactcctcgcggagcatttgaagcaccttcctcacaccagcctcacctt 1052

                                        
Query: 302  ccaccgccagcgagaacaccaccggcct 329
            || | ||||  |||||||||||||||||
Sbjct: 1051 ccgcagccaaagagaacaccaccggcct 1024
to top
>dbj|AK068129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A08, full
            insert sequence
          Length = 1986

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 86/106 (81%)
 Strand = Plus / Minus

                                                                        
Query: 224  tgcagccgctgagcgccatggtcagctcgaactcgtcgcgcagcatcttgagcacgttgc 283
            |||||||||||||||||||||| | ||| | |||||| | |||||||   ||| |||| |
Sbjct: 1620 tgcagccgctgagcgccatggtgatctccagctcgtctctcagcatccgcagcgcgttcc 1561

                                                          
Query: 284  tcaccccggcctccccggccaccgccagcgagaacaccaccggcct 329
            |||| |||||||| ||| | |  || || ||||||| |||||||||
Sbjct: 1560 tcacgccggcctcgccgtcgatggcgagggagaacagcaccggcct 1515
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 166    acgccgaatttgtcggcctcg 186
              |||||||||||||||||||||
Sbjct: 106751 acgccgaatttgtcggcctcg 106771
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 62       atcatgcatggatgcccttac 82
                |||||||||||||||||||||
Sbjct: 41232292 atcatgcatggatgcccttac 41232272
to top
>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150F11
          Length = 130355

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    atcatgcatggatgcccttac 82
             |||||||||||||||||||||
Sbjct: 49207 atcatgcatggatgcccttac 49187
to top
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504E02
          Length = 137468

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     atcatgcatggatgcccttac 82
              |||||||||||||||||||||
Sbjct: 129347 atcatgcatggatgcccttac 129327
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 177    gtcggcctcggtgacgacgtggttg 201
              ||||||||||||||||| |||||||
Sbjct: 760046 gtcggcctcggtgacgaggtggttg 760022
to top
>ref|NM_180253.1| Arabidopsis thaliana glycolate oxidase/ oxidoreductase AT3G14420
            transcript variant AT3G14420.2 mRNA, complete cds
          Length = 1494

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1127 gccatggtcagctcgaactc 1108
to top
>ref|NM_180254.1| Arabidopsis thaliana glycolate oxidase/ oxidoreductase AT3G14420
            transcript variant AT3G14420.3 mRNA, complete cds
          Length = 1586

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1219 gccatggtcagctcgaactc 1200
to top
>ref|NM_001035617.1| Arabidopsis thaliana glycolate oxidase/ oxidoreductase AT3G14420
            transcript variant AT3G14420.4 mRNA, complete cds
          Length = 1482

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1115 gccatggtcagctcgaactc 1096
to top
>ref|NM_112302.2| Arabidopsis thaliana glycolate oxidase/ oxidoreductase AT3G14420
            transcript variant AT3G14420.1 mRNA, complete cds
          Length = 1453

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1086 gccatggtcagctcgaactc 1067
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     ggtcagctcgaactcgtcgc 262
               ||||||||||||||||||||
Sbjct: 1801278 ggtcagctcgaactcgtcgc 1801297
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 290    cggcctccccggccaccgccagcg 313
              |||||||||||||||||| |||||
Sbjct: 627800 cggcctccccggccaccgtcagcg 627823
to top
>gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, complete sequence
          Length = 1525

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 246  cagctcgaactcgtcgcgcagcatcttg 273
            |||| ||||| |||||||||||||||||
Sbjct: 1019 cagcccgaacgcgtcgcgcagcatcttg 992
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    tcgaactcgtcgcgcagcatcttg 273
              |||| |||||||||||||||||||
Sbjct: 151834 tcgatctcgtcgcgcagcatcttg 151857
to top
>emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene)
          Length = 1514

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 246 cagctcgaactcgtcgcgcagcatcttg 273
           |||| ||||| |||||||||||||||||
Sbjct: 915 cagcccgaacgcgtcgcgcagcatcttg 888
to top
>emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransferase (a4 gene)
          Length = 1580

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 246 cagctcgaactcgtcgcgcagcatcttg 273
           |||| ||||| |||||||||||||||||
Sbjct: 998 cagcccgaacgcgtcgcgcagcatcttg 971
to top
>emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4 gene)
          Length = 1476

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 246 cagctcgaactcgtcgcgcagcatcttg 273
           |||| ||||| |||||||||||||||||
Sbjct: 894 cagcccgaacgcgtcgcgcagcatcttg 867
to top
>gb|AY081566.1| Arabidopsis thaliana glycolate oxidase (At3g14420) mRNA, complete
           cds
          Length = 577

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gccatggtcagctcgaactc 257
           ||||||||||||||||||||
Sbjct: 446 gccatggtcagctcgaactc 427
to top
>gb|AY074830.1| Arabidopsis thaliana AT3g14420/MOA2_2 mRNA, complete cds
          Length = 1104

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1016 gccatggtcagctcgaactc 997
to top
>gb|AY065122.1| Arabidopsis thaliana glycolate oxidase (At3g14420; MOA2.2) mRNA,
           complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gccatggtcagctcgaactc 257
           ||||||||||||||||||||
Sbjct: 691 gccatggtcagctcgaactc 672
to top
>gb|AF428328.1|AF428328 Arabidopsis thaliana AT3g14420/MOA2_2 mRNA, complete cds
          Length = 1356

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1069 gccatggtcagctcgaactc 1050
to top
>gb|AF428396.1|AF428396 Arabidopsis thaliana AT3g14420/MOA2_2 mRNA, complete cds
          Length = 1377

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1062 gccatggtcagctcgaactc 1043
to top
>dbj|AK220934.1| Arabidopsis thaliana mRNA for glycolate oxidase like protein,
           partial cds, clone: RAFL22-51-H24
          Length = 438

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gccatggtcagctcgaactc 257
           ||||||||||||||||||||
Sbjct: 156 gccatggtcagctcgaactc 137
to top
>gb|AY053412.1| Arabidopsis thaliana AT3g14420/MOA2_2 mRNA, complete cds
          Length = 1427

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 1067 gccatggtcagctcgaactc 1048
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tgagcgccatggtcagctcg 252
              ||||||||||||||||||||
Sbjct: 397777 tgagcgccatggtcagctcg 397758
to top
>dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOA2
          Length = 52232

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gccatggtcagctcgaactc 257
            ||||||||||||||||||||
Sbjct: 4003 gccatggtcagctcgaactc 3984
to top
>gb|AF061070.1|AF061070 Pseudomonas stutzeri Orf117 (orf117), Orf86 (orf86) genes, complete
            cds; and ptxABCDE operon, partial sequence
          Length = 5644

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 300  ggccaccgccagcgagaacaccac 323
            ||||||| ||||||||||||||||
Sbjct: 3534 ggccaccaccagcgagaacaccac 3511
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 286    accccggcctccccggccaccgcc 309
              ||||||||||| ||||||||||||
Sbjct: 476541 accccggcctcgccggccaccgcc 476518


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,863,269
Number of Sequences: 3902068
Number of extensions: 1863269
Number of successful extensions: 35686
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35042
Number of HSP's gapped (non-prelim): 642
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top