ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63j10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 357 bits (180), Expect = 3e-95 Identities = 325/372 (87%), Gaps = 1/372 (0%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 2467198 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 2467257 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2467258 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 2467317 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 2467318 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 2467377 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 2467378 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 2467437 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| |||| || |||||||| ||||| |||||||| || ||||| Sbjct: 2467438 tggtacatgacgcgcgcgccgcc-gtcgacgtaggtgccgtcggggagcacgtcggcggc 2467496 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||| Sbjct: 2467497 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtacagcac 2467556 Query: 545 cgcgtgcgtgta 556 ||||| ||||| Sbjct: 2467557 ggcgtgggtgta 2467568 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2507970 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2508029 Query: 174 c 174 | Sbjct: 2508030 c 2508030 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2467115 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2467174 Query: 174 c 174 | Sbjct: 2467175 c 2467175 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||| |||||| | Sbjct: 2508050 cggccattctcgccgacgacctcgacgtcgaacgccctctcgacggcgacgttgaccgtc 2508109 Query: 245 ttcatctcagtga 257 ||||||||||||| Sbjct: 2508110 ttcatctcagtga 2508122 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 437045 agtcgaactgcaccggcggg 437026
>dbj|AK064287.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H01, full insert sequence Length = 1772 Score = 357 bits (180), Expect = 3e-95 Identities = 325/372 (87%), Gaps = 1/372 (0%) Strand = Plus / Minus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 1553 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 1494 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1493 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 1434 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 1433 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 1374 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 1373 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 1314 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| |||| || |||||||| ||||| |||||||| || ||||| Sbjct: 1313 tggtacatgacgcgcgcgccgcc-gtcgacgtaggtgccgtcggggagcacgtcggcggc 1255 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||| Sbjct: 1254 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtacagcac 1195 Query: 545 cgcgtgcgtgta 556 ||||| ||||| Sbjct: 1194 ggcgtgggtgta 1183 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 1636 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 1577 Query: 174 c 174 | Sbjct: 1576 c 1576
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 357 bits (180), Expect = 3e-95 Identities = 325/372 (87%), Gaps = 1/372 (0%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 2467142 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 2467201 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2467202 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 2467261 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 2467262 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 2467321 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 2467322 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 2467381 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| |||| || |||||||| ||||| |||||||| || ||||| Sbjct: 2467382 tggtacatgacgcgcgcgccgcc-gtcgacgtaggtgccgtcggggagcacgtcggcggc 2467440 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||| Sbjct: 2467441 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtacagcac 2467500 Query: 545 cgcgtgcgtgta 556 ||||| ||||| Sbjct: 2467501 ggcgtgggtgta 2467512 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2507914 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2507973 Query: 174 c 174 | Sbjct: 2507974 c 2507974 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2467059 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2467118 Query: 174 c 174 | Sbjct: 2467119 c 2467119 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||| |||||| | Sbjct: 2507994 cggccattctcgccgacgacctcgacgtcgaacgccctctcgacggcgacgttgaccgtc 2508053 Query: 245 ttcatctcagtga 257 ||||||||||||| Sbjct: 2508054 ttcatctcagtga 2508066 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 437045 agtcgaactgcaccggcggg 437026
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 122901 Score = 357 bits (180), Expect = 3e-95 Identities = 325/372 (87%), Gaps = 1/372 (0%) Strand = Plus / Minus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 76294 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 76235 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76234 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 76175 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 76174 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 76115 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 76114 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 76055 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| |||| || |||||||| ||||| |||||||| || ||||| Sbjct: 76054 tggtacatgacgcgcgcgccgcc-gtcgacgtaggtgccgtcggggagcacgtcggcggc 75996 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||| Sbjct: 75995 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtacagcac 75936 Query: 545 cgcgtgcgtgta 556 ||||| ||||| Sbjct: 75935 ggcgtgggtgta 75924 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 76377 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 76318 Query: 174 c 174 | Sbjct: 76317 c 76317 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 173 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 35522 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 35463 Query: 174 c 174 | Sbjct: 35462 c 35462 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||| |||||| | Sbjct: 35442 cggccattctcgccgacgacctcgacgtcgaacgccctctcgacggcgacgttgaccgtc 35383 Query: 245 ttcatctcagtga 257 ||||||||||||| Sbjct: 35382 ttcatctcagtga 35370
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 317 bits (160), Expect = 2e-83 Identities = 338/396 (85%), Gaps = 1/396 (0%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 149610 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 149669 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 149670 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 149729 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 149730 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 149789 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 149790 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 149849 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| ||||| | |||||||| ||||| |||||||| || ||||| Sbjct: 149850 tggtacatgacgcgcgcgtcgcc-gccgacgtaggtgccgtcggggagcacgtcggcggc 149908 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| Sbjct: 149909 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtgcagcac 149968 Query: 545 cgcgtgcgtgtactgcaggctcttgagatgctcgta 580 ||||| ||||| || |||| |||||| |||||||| Sbjct: 149969 ggcgtgggtgtagtggaggcccttgaggtgctcgta 150004 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 119 ctcactgggagccctccactgatggacgcggtgagccccg 158 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 149535 ctcacttggagcccgccactgatcgacgcggtgagccccg 149574
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 317 bits (160), Expect = 2e-83 Identities = 338/396 (85%), Gaps = 1/396 (0%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 25754 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 25813 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 25814 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 25873 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 25874 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 25933 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 25934 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 25993 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| ||||| | |||||||| ||||| |||||||| || ||||| Sbjct: 25994 tggtacatgacgcgcgcgtcgcc-gccgacgtaggtgccgtcggggagcacgtcggcggc 26052 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| Sbjct: 26053 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtgcagcac 26112 Query: 545 cgcgtgcgtgtactgcaggctcttgagatgctcgta 580 ||||| ||||| || |||| |||||| |||||||| Sbjct: 26113 ggcgtgggtgtagtggaggcccttgaggtgctcgta 26148 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 119 ctcactgggagccctccactgatggacgcggtgagccccg 158 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 25679 ctcacttggagcccgccactgatcgacgcggtgagccccg 25718
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 317 bits (160), Expect = 2e-83 Identities = 338/396 (85%), Gaps = 1/396 (0%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 2373611 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 2373670 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2373671 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 2373730 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 2373731 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 2373790 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 2373791 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 2373850 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| ||||| | |||||||| ||||| |||||||| || ||||| Sbjct: 2373851 tggtacatgacgcgcgcgtcgcc-gccgacgtaggtgccgtcggggagcacgtcggcggc 2373909 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| Sbjct: 2373910 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtgcagcac 2373969 Query: 545 cgcgtgcgtgtactgcaggctcttgagatgctcgta 580 ||||| ||||| || |||| |||||| |||||||| Sbjct: 2373970 ggcgtgggtgtagtggaggcccttgaggtgctcgta 2374005 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 119 ctcactgggagccctccactgatggacgcggtgagccccg 158 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 2373536 ctcacttggagcccgccactgatcgacgcggtgagccccg 2373575 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 395335 agtcgaactgcaccggcggg 395316
>dbj|AK106404.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G11, full insert sequence Length = 1871 Score = 317 bits (160), Expect = 2e-83 Identities = 338/396 (85%), Gaps = 1/396 (0%) Strand = Plus / Minus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 1520 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 1461 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1460 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 1401 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 1400 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 1341 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 1340 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 1281 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| ||||| | |||||||| ||||| |||||||| || ||||| Sbjct: 1280 tggtacatgacgcgcgcgtcgcc-gccgacgtaggtgccgtcggggagcacgtcggcggc 1222 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| Sbjct: 1221 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtgcagcac 1162 Query: 545 cgcgtgcgtgtactgcaggctcttgagatgctcgta 580 ||||| ||||| || |||| |||||| |||||||| Sbjct: 1161 ggcgtgggtgtagtggaggcccttgaggtgctcgta 1126 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 119 ctcactgggagccctccactgatggacgcggtgagccccg 158 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 1595 ctcacttggagcccgccactgatcgacgcggtgagccccg 1556
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 317 bits (160), Expect = 2e-83 Identities = 338/396 (85%), Gaps = 1/396 (0%) Strand = Plus / Plus Query: 185 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 244 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 2381393 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 2381452 Query: 245 ttcatctcagtgacggcgagctccttgccgaggcacacgcggaggccggcctggaacact 304 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2381453 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 2381512 Query: 305 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 364 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 2381513 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 2381572 Query: 365 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 424 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 2381573 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 2381632 Query: 425 tggtacatgacgcgcgactcgcctttccacgtaggttccgtccgggagcacatccgcggc 484 |||||||||||||||| ||||| | |||||||| ||||| |||||||| || ||||| Sbjct: 2381633 tggtacatgacgcgcgcgtcgcc-gccgacgtaggtgccgtcggggagcacgtcggcggc 2381691 Query: 485 ggcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacac 544 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| Sbjct: 2381692 ggcgcagaacttggagtcgaactgcaccggcgggaacagccgcatgttctcgtgcagcac 2381751 Query: 545 cgcgtgcgtgtactgcaggctcttgagatgctcgta 580 ||||| ||||| || |||| |||||| |||||||| Sbjct: 2381752 ggcgtgggtgtagtggaggcccttgaggtgctcgta 2381787 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 119 ctcactgggagccctccactgatggacgcggtgagccccg 158 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 2381318 ctcacttggagcccgccactgatcgacgcggtgagccccg 2381357 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 395335 agtcgaactgcaccggcggg 395316
>gb|BT018678.1| Zea mays clone EL01N0511B03.d mRNA sequence Length = 1945 Score = 206 bits (104), Expect = 6e-50 Identities = 200/232 (86%) Strand = Plus / Minus Query: 209 acgtcgaaagctctcaccacggccacgctgaccgccttcatctcagtgacggcgagctcc 268 |||||||| || ||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct: 1547 acgtcgaacgccctcacgacggccaccgcgaccgccttcatctcggtgacggcgagctcc 1488 Query: 269 ttgccgaggcacacgcggaggccggcctggaacactgggtacttgtacaggctagccggc 328 ||||||||||||||||||||||| ||||||||||| |||||| |||||||||| | || Sbjct: 1487 ttgccgaggcacacgcggaggcccgcctggaacaccgggtacctgtacaggctctctggg 1428 Query: 329 gcgaacgaaccaccgggtccagtgagccaccggtcggggcggaacgcttcgtaatcggcg 388 ||||||| || |||| || |||||||| ||| | |||||||| || ||| |||||| Sbjct: 1427 acgaacgagccgccggcgccggtgagccagcggcccgggcggaaggcgccgtggtcggcg 1368 Query: 389 ccccagatgctgggcatgcggcccatggcgtacgggtggtacatgacgcgcg 440 |||||||||| |||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1367 ccccagatgcgcggcatgcggcccatggcgtaggggtggtacatcacgcgcg 1316 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 486 gcgctgaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacacc 545 |||| ||||| |||||||||||||||||||||||||| ||||||||||| |||| |||| Sbjct: 1269 gcgcagaactgggagtcgaactgcaccggcgggaacagccgcatgttctcgtacagcacc 1210 Query: 546 gcgtgcgtgtactgcaggctcttgagatgctcgta 580 ||||| ||||| ||||||| ||| || |||||||| Sbjct: 1209 gcgtgggtgtagtgcaggcgcttcaggtgctcgta 1175 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 114 tgatcctcactgggagccctccactgatggacgcggtgagccccg 158 |||||||||| |||||||| || |||||||||||||||||||||| Sbjct: 1642 tgatcctcaccgggagcccgccgctgatggacgcggtgagccccg 1598
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 491 gaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacaccgcgtg 550 |||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||||| Sbjct: 38190 gaacttggagtcgaactgcaccggcgggaacagccgcatgctctcgtacagcgccgcgtg 38131 Query: 551 c 551 | Sbjct: 38130 c 38130 Score = 48.1 bits (24), Expect = 0.033 Identities = 87/108 (80%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 38447 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 38388 Query: 287 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 334 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 38387 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 38340
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 491 gaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacaccgcgtg 550 |||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||||| Sbjct: 21647014 gaacttggagtcgaactgcaccggcgggaacagccgcatgctctcgtacagcgccgcgtg 21646955 Query: 551 c 551 | Sbjct: 21646954 c 21646954 Score = 48.1 bits (24), Expect = 0.033 Identities = 87/108 (80%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 21647271 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 21647212 Query: 287 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 334 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 21647211 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 21647164
>dbj|AK111423.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G11, full insert sequence Length = 1730 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 491 gaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacaccgcgtg 550 |||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||||| Sbjct: 394 gaacttggagtcgaactgcaccggcgggaacagccgcatgctctcgtacagcgccgcgtg 453 Query: 551 c 551 | Sbjct: 454 c 454 Score = 48.1 bits (24), Expect = 0.033 Identities = 87/108 (80%) Strand = Plus / Plus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 137 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 196 Query: 287 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 334 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 197 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 244
>dbj|AK105264.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D01, full insert sequence Length = 2395 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 491 gaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacaccgcgtg 550 |||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||||| Sbjct: 1284 gaacttggagtcgaactgcaccggcgggaacagccgcatgctctcgtacagcgccgcgtg 1225 Query: 551 c 551 | Sbjct: 1224 c 1224 Score = 48.1 bits (24), Expect = 0.033 Identities = 87/108 (80%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 1541 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 1482 Query: 287 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 334 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 1481 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 1434
>dbj|AK105131.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G02, full insert sequence Length = 894 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 491 gaacttggagtcgaactgcaccggcgggaacaagcgcatgttctcatacaacaccgcgtg 550 |||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||||| Sbjct: 186 gaacttggagtcgaactgcaccggcgggaacagccgcatgctctcgtacagcgccgcgtg 127 Query: 551 c 551 | Sbjct: 126 c 126 Score = 48.1 bits (24), Expect = 0.033 Identities = 87/108 (80%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 443 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 384 Query: 287 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 334 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 383 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 336
>ref|NM_190681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 492 aacttggagtcgaactgcaccggcgggaacaagcgcatgttctcataca 540 |||||||| ||||||||||| |||||||||| ||||||| |||| |||| Sbjct: 1169 aacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtaca 1121 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1427 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1368 Query: 287 aggccggcctggaacactgggta 309 | ||| ||||||||||| ||||| Sbjct: 1367 acgcccgcctggaacaccgggta 1345
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 492 aacttggagtcgaactgcaccggcgggaacaagcgcatgttctcataca 540 |||||||| ||||||||||| |||||||||| ||||||| |||| |||| Sbjct: 37091129 aacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtaca 37091177 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 37090871 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 37090930 Query: 287 aggccggcctggaacactgggta 309 | ||| ||||||||||| ||||| Sbjct: 37090931 acgcccgcctggaacaccgggta 37090953 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 35397922 agtcgaactgcaccggcggg 35397903
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 492 aacttggagtcgaactgcaccggcgggaacaagcgcatgttctcataca 540 |||||||| ||||||||||| |||||||||| ||||||| |||| |||| Sbjct: 92270 aacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtaca 92318 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 92012 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 92071 Query: 287 aggccggcctggaacactgggta 309 | ||| ||||||||||| ||||| Sbjct: 92072 acgcccgcctggaacaccgggta 92094
>dbj|AK119283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C08, full insert sequence Length = 2845 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 492 aacttggagtcgaactgcaccggcgggaacaagcgcatgttctcataca 540 |||||||| ||||||||||| |||||||||| ||||||| |||| |||| Sbjct: 1260 aacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtaca 1212 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1518 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1459 Query: 287 aggccggcctggaacactgggta 309 | ||| ||||||||||| ||||| Sbjct: 1458 acgcccgcctggaacaccgggta 1436
>dbj|AK100746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118I04, full insert sequence Length = 1754 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 492 aacttggagtcgaactgcaccggcgggaacaagcgcatgttctcataca 540 |||||||| ||||||||||| |||||||||| ||||||| |||| |||| Sbjct: 1261 aacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtaca 1213 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1519 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1460 Query: 287 aggccggcctggaacactgggta 309 | ||| ||||||||||| ||||| Sbjct: 1459 acgcccgcctggaacaccgggta 1437
>dbj|AK061128.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H02, full insert sequence Length = 1754 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 492 aacttggagtcgaactgcaccggcgggaacaagcgcatgttctcataca 540 |||||||| ||||||||||| |||||||||| ||||||| |||| |||| Sbjct: 1261 aacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtaca 1213 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 227 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcacacgcgg 286 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1519 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1460 Query: 287 aggccggcctggaacactgggta 309 | ||| ||||||||||| ||||| Sbjct: 1459 acgcccgcctggaacaccgggta 1437
>dbj|AP004941.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT25N10, TM0109, complete sequence Length = 75234 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 508 gcaccggcgggaacaagcgcatgttctcatacaacaccgcgtgcgtgtac 557 ||||||||||| |||| | |||| ||||| ||||| |||||||||||||| Sbjct: 67610 gcaccggcgggtacaacctcatgctctcacacaacgccgcgtgcgtgtac 67561
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 501 tcgaactgcaccggcgggaaca 522 |||||||||||||||||||||| Sbjct: 1121668 tcgaactgcaccggcgggaaca 1121647
>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster, complete sequence Length = 49461 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 cggaactcgacgtcgaagcgc 110 ||||||||||||||||||||| Sbjct: 29591 cggaactcgacgtcgaagcgc 29611
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 caccacggccacgctgaccgc 243 ||||||||||||||||||||| Sbjct: 148971 caccacggccacgctgaccgc 148951
>dbj|AP003031.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-535A19, complete sequences Length = 95585 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tttcttattaaagaaacaact 23 ||||||||||||||||||||| Sbjct: 92940 tttcttattaaagaaacaact 92960
>dbj|AP003168.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-263C24, complete sequence Length = 122001 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tttcttattaaagaaacaact 23 ||||||||||||||||||||| Sbjct: 5632 tttcttattaaagaaacaact 5652
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 gacggcgagctccttgccgag 276 ||||||||||||||||||||| Sbjct: 2245338 gacggcgagctccttgccgag 2245358
>ref|NM_190416.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1704 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 1276 agtcgaactgcaccggcggg 1257
>ref|XM_478794.1| Oryza sativa (japonica cultivar-group), mRNA Length = 911 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 tgctgggcatgcggcccatggcgt 419 ||||| |||||||||||||||||| Sbjct: 105 tgctgtgcatgcggcccatggcgt 82
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 accacggccacgctgaccgc 243 |||||||||||||||||||| Sbjct: 96756 accacggccacgctgaccgc 96775
>emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on chromosome 13 Contains the 5' end of the UGCGL2 gene for UDP-glucose ceramide glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), the 5' end of the gene for a novel protein similar to heparan sulfate 6-sulfotransferase and two CpG islands, complete sequence Length = 186131 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ctctatgtacattgctagcg 66 |||||||||||||||||||| Sbjct: 12201 ctctatgtacattgctagcg 12220
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cgccccagatgctgggcatg 406 |||||||||||||||||||| Sbjct: 3475098 cgccccagatgctgggcatg 3475079
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 ctgaattttttatctgaagtcgga 93 |||||||||||||| ||||||||| Sbjct: 1688469 ctgaattttttatccgaagtcgga 1688446
>gb|AC087638.7| Homo sapiens chromosome 15, clone RP11-655F8, complete sequence Length = 173062 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cgaaagctctcaccacggcc 232 |||||||||||||||||||| Sbjct: 153399 cgaaagctctcaccacggcc 153418
>gb|AC010809.10| Homo sapiens, clone RP11-3D4, complete sequence Length = 173087 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cgaaagctctcaccacggcc 232 |||||||||||||||||||| Sbjct: 168937 cgaaagctctcaccacggcc 168918
>gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosome 9, complete sequence Length = 142451 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 atctgaattttttatctgaa 87 |||||||||||||||||||| Sbjct: 36587 atctgaattttttatctgaa 36606
>emb|BX120011.13| Zebrafish DNA sequence from clone DKEY-18O5 in linkage group 25, complete sequence Length = 225675 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tcttattaaagaaacaactc 24 |||||||||||||||||||| Sbjct: 193897 tcttattaaagaaacaactc 193878
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cgctgaccgccttcatctca 253 |||||||||||||||||||| Sbjct: 491222 cgctgaccgccttcatctca 491241
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 tgctgggcatgcggcccatggcgt 419 ||||| |||||||||||||||||| Sbjct: 23099708 tgctgtgcatgcggcccatggcgt 23099685
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 21871 agtcgaactgcaccggcggg 21852
>emb|AJ234679.1|HVU234679 Hordeum vulgare genomic DNA fragment; clone MWG0961.uni Length = 510 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 93 agtcgaactgcaccggcggg 112
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 tgctgggcatgcggcccatggcgt 419 ||||| |||||||||||||||||| Sbjct: 43892 tgctgtgcatgcggcccatggcgt 43869
>dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F06, full insert sequence Length = 1973 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 1403 agtcgaactgcaccggcggg 1384
>dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D07, full insert sequence Length = 1678 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 1043 agtcgaactgcaccggcggg 1024
>dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072C02, full insert sequence Length = 2023 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 1388 agtcgaactgcaccggcggg 1369
>dbj|AK063015.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A09, full insert sequence Length = 912 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 tgctgggcatgcggcccatggcgt 419 ||||| |||||||||||||||||| Sbjct: 106 tgctgtgcatgcggcccatggcgt 83
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 102653 agtcgaactgcaccggcggg 102634
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 agtcgaactgcaccggcggg 518 |||||||||||||||||||| Sbjct: 109727 agtcgaactgcaccggcggg 109746
>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete sequence Length = 193329 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 atctgaattttttatctgaa 87 |||||||||||||||||||| Sbjct: 61168 atctgaattttttatctgaa 61187 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,629,838 Number of Sequences: 3902068 Number of extensions: 3629838 Number of successful extensions: 64044 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63526 Number of HSP's gapped (non-prelim): 517 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
