ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63j07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AK111511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
4emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa... 82 2e-12
5gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, comple... 48 0.031
6emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chr... 48 0.031
7gb|AC165154.2| Mus musculus BAC clone RP23-302C3 from chromosome... 42 1.9
8emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 ... 42 1.9
9emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, ... 42 1.9
10gb|AF241728.2| Homo sapiens chromosome X clone RP4-646N3 map p11... 40 7.5
11gb|AY279213.1| Rivulus marmoratus cytochrome P450 1A (CYP1A) gen... 40 7.5
12gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 ma... 40 7.5
13gb|AC124807.11| Mus musculus chromosome 3, clone RP23-137I13, co... 40 7.5
14gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosom... 40 7.5
15emb|AL593857.10| Mouse DNA sequence from clone RP23-439H2 on chr... 40 7.5
16gb|AC117485.4| Homo sapiens 3 BAC CTD-2501O3 (Cal Tech Human BAC... 40 7.5
17emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in... 40 7.5
18gb|AC025895.9| Homo sapiens, clone RP11-610C20, complete sequence 40 7.5
19gb|AC022903.12| Homo sapiens chromosome 17, clone RP11-642M2, co... 40 7.5
20gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold 40 7.5
21gb|AC160760.4| Mus musculus BAC clone RP23-449G13 from chromosom... 40 7.5
22gb|AC007414.6| Drosophila melanogaster, chromosome 2R, region 46... 40 7.5
23gb|AC181984.1| Pan troglodytes chromosome X clone CH251-244H4 ma... 40 7.5
24gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq... 40 7.5
25gb|AC020599.4|AC020599 Homo sapiens BAC clone RP11-440L13 from 4... 40 7.5
26gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 40 7.5
27gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, comple... 40 7.5
28gb|AC151289.3| Mus musculus BAC clone RP23-364K1 from chromosome... 40 7.5
29dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.5
30emb|BX663516.23| Zebrafish DNA sequence from clone DKEY-16F21 in... 40 7.5
31emb|BX950852.8| Zebrafish DNA sequence from clone DKEY-154B17 in... 40 7.5
32gb|AE003831.3| Drosophila melanogaster chromosome 2R, section 19... 40 7.5
33gb|AC140942.1| Gallus gallus BAC clone TAM32-50C11 from chromoso... 40 7.5
34gb|AC147718.1| Gallus gallus BAC clone CH261-18A20 from chromoso... 40 7.5
35gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromoso... 40 7.5
36emb|AL732313.9| Mouse DNA sequence from clone RP23-126F10 on chr... 40 7.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/96 (86%), Gaps = 2/96 (2%)
 Strand = Plus / Minus

                                                                            
Query: 456      agcagcaaaaggatggatgaggacctgtacagcttcagcttttccaatgtgtgggatata 515
                ||||| |||||||||||  ||||||||||||||||||||| ||  ||| ||| ||  | |
Sbjct: 12246792 agcagaaaaaggatggacaaggacctgtacagcttcagctctttgaatttgttgg--aga 12246735

                                                    
Query: 516      taattactgaagaatcaagaatgggaggcagcatga 551
                ||||||||||||| |||||||||||||| |||||||
Sbjct: 12246734 taattactgaagagtcaagaatgggaggtagcatga 12246699



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 92       tgttttcaacatgcaaacttgaacaagcag 121
                ||||||||||||||| ||||| ||||||||
Sbjct: 12247147 tgttttcaacatgcacacttgcacaagcag 12247118



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 261      atcaaggcacatcattcgcagaaaccagtgtcag 294
                ||||||||||||||||||| ||| | ||||||||
Sbjct: 12246993 atcaaggcacatcattcgccgaaccgagtgtcag 12246960
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>dbj|AK111511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J05, full
            insert sequence
          Length = 2128

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/96 (86%), Gaps = 2/96 (2%)
 Strand = Plus / Minus

                                                                        
Query: 456  agcagcaaaaggatggatgaggacctgtacagcttcagcttttccaatgtgtgggatata 515
            ||||| |||||||||||  ||||||||||||||||||||| ||  ||| ||| ||  | |
Sbjct: 1659 agcagaaaaaggatggacaaggacctgtacagcttcagctctttgaatttgttgg--aga 1602

                                                
Query: 516  taattactgaagaatcaagaatgggaggcagcatga 551
            ||||||||||||| |||||||||||||| |||||||
Sbjct: 1601 taattactgaagagtcaagaatgggaggtagcatga 1566



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 92   tgttttcaacatgcaaacttgaacaagcag 121
            ||||||||||||||| ||||| ||||||||
Sbjct: 2014 tgttttcaacatgcacacttgcacaagcag 1985



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 261  atcaaggcacatcattcgcagaaaccagtgtcag 294
            ||||||||||||||||||| ||| | ||||||||
Sbjct: 1860 atcaaggcacatcattcgccgaaccgagtgtcag 1827
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/96 (86%), Gaps = 2/96 (2%)
 Strand = Plus / Minus

                                                                            
Query: 456      agcagcaaaaggatggatgaggacctgtacagcttcagcttttccaatgtgtgggatata 515
                ||||| |||||||||||  ||||||||||||||||||||| ||  ||| ||| ||  | |
Sbjct: 12201162 agcagaaaaaggatggacaaggacctgtacagcttcagctctttgaatttgttgg--aga 12201105

                                                    
Query: 516      taattactgaagaatcaagaatgggaggcagcatga 551
                ||||||||||||| |||||||||||||| |||||||
Sbjct: 12201104 taattactgaagagtcaagaatgggaggtagcatga 12201069



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 92       tgttttcaacatgcaaacttgaacaagcag 121
                ||||||||||||||| ||||| ||||||||
Sbjct: 12201517 tgttttcaacatgcacacttgcacaagcag 12201488



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 261      atcaaggcacatcattcgcagaaaccagtgtcag 294
                ||||||||||||||||||| ||| | ||||||||
Sbjct: 12201363 atcaaggcacatcattcgccgaaccgagtgtcag 12201330
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>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159296

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/96 (86%), Gaps = 2/96 (2%)
 Strand = Plus / Plus

                                                                         
Query: 456   agcagcaaaaggatggatgaggacctgtacagcttcagcttttccaatgtgtgggatata 515
             ||||| |||||||||||  ||||||||||||||||||||| ||  ||| ||| ||  | |
Sbjct: 50525 agcagaaaaaggatggacaaggacctgtacagcttcagctctttgaatttgttgg--aga 50582

                                                 
Query: 516   taattactgaagaatcaagaatgggaggcagcatga 551
             ||||||||||||| |||||||||||||| |||||||
Sbjct: 50583 taattactgaagagtcaagaatgggaggtagcatga 50618



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 261   atcaaggcacatcattcgcagaaaccagtgtcag 294
             ||||||||||||||||||| ||| | ||||||||
Sbjct: 50324 atcaaggcacatcattcgccgaaccgagtgtcag 50357



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 92    tgttttcaacatgcaaacttgaacaagcag 121
             ||||||||||||||| ||||| ||||||||
Sbjct: 50170 tgttttcaacatgcacacttgcacaagcag 50199
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>gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, complete sequence
          Length = 170884

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 523   tgaagaatcaagaatgggaggcagcatg 550
             |||| |||||||||||||||||||||||
Sbjct: 92902 tgaaaaatcaagaatgggaggcagcatg 92875
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>emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chromosome 2, complete
              sequence
          Length = 178976

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 523    tgaagaatcaagaatgggaggcagcatg 550
              |||| |||||||||||||||||||||||
Sbjct: 168565 tgaaaaatcaagaatgggaggcagcatg 168538
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>gb|AC165154.2| Mus musculus BAC clone RP23-302C3 from chromosome 14, complete sequence
          Length = 225721

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    ccccacccccaaatgctgaga 163
              |||||||||||||||||||||
Sbjct: 110105 ccccacccccaaatgctgaga 110085
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>emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 map Xq28, complete
              sequence
          Length = 144757

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 524    gaagaatcaagaatgggaggcagca 548
              ||||| |||||||||||||||||||
Sbjct: 104615 gaagactcaagaatgggaggcagca 104591
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>emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096,
             A12197, 12G8, A09100; complete sequence bases 1..217657
          Length = 217657

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 524   gaagaatcaagaatgggaggcagca 548
             ||||| |||||||||||||||||||
Sbjct: 18029 gaagactcaagaatgggaggcagca 18005
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>gb|AF241728.2| Homo sapiens chromosome X clone RP4-646N3 map p11.4, complete sequence
          Length = 133506

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tagagataaatagtaaagat 341
             ||||||||||||||||||||
Sbjct: 82999 tagagataaatagtaaagat 82980
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>gb|AY279213.1| Rivulus marmoratus cytochrome P450 1A (CYP1A) gene, complete cds
          Length = 11863

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 477  gacctgtacagcttcagctt 496
            ||||||||||||||||||||
Sbjct: 8041 gacctgtacagcttcagctt 8060
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>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence
          Length = 191014

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    aaacctcaaaagagcagcaa 463
              ||||||||||||||||||||
Sbjct: 113556 aaacctcaaaagagcagcaa 113575



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gagtggatcttgtgtccata 315
             ||||||||||||||||||||
Sbjct: 76524 gagtggatcttgtgtccata 76543
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>gb|AC124807.11| Mus musculus chromosome 3, clone RP23-137I13, complete sequence
          Length = 213113

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   cactaccccacccccaaatg 157
             ||||||||||||||||||||
Sbjct: 35926 cactaccccacccccaaatg 35945
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>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence
          Length = 210014

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    aaacctcaaaagagcagcaa 463
              ||||||||||||||||||||
Sbjct: 141924 aaacctcaaaagagcagcaa 141943



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    gagtggatcttgtgtccata 315
              ||||||||||||||||||||
Sbjct: 104893 gagtggatcttgtgtccata 104912
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>emb|AL593857.10| Mouse DNA sequence from clone RP23-439H2 on chromosome 2, complete
             sequence
          Length = 206452

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 126   ccctaccattaccactaccccaccccca 153
             |||||| ||||||||||||| |||||||
Sbjct: 55422 ccctactattaccactacccaaccccca 55395
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>gb|AC117485.4| Homo sapiens 3 BAC CTD-2501O3 (Cal Tech Human BAC Library D) complete
             sequence
          Length = 144728

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aacatgcaaacttgaacaag 118
             ||||||||||||||||||||
Sbjct: 43883 aacatgcaaacttgaacaag 43864
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>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5,
            complete sequence
          Length = 204925

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 519  ttactgaagaatcaagaatg 538
            ||||||||||||||||||||
Sbjct: 6927 ttactgaagaatcaagaatg 6946
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>gb|AC025895.9| Homo sapiens, clone RP11-610C20, complete sequence
          Length = 179113

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 456    agcagcaaaaggatggatga 475
              ||||||||||||||||||||
Sbjct: 127294 agcagcaaaaggatggatga 127313
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>gb|AC022903.12| Homo sapiens chromosome 17, clone RP11-642M2, complete sequence
          Length = 191818

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ccccacccccaaatgctgag 162
              ||||||||||||||||||||
Sbjct: 101914 ccccacccccaaatgctgag 101895
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>gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold
          Length = 347743

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     tgttttcaacatgcaaactt 111
              ||||||||||||||||||||
Sbjct: 203198 tgttttcaacatgcaaactt 203217
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>gb|AC160760.4| Mus musculus BAC clone RP23-449G13 from chromosome 17, complete sequence
          Length = 174449

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     tttcaacatgcaaacttgaa 114
              ||||||||||||||||||||
Sbjct: 167207 tttcaacatgcaaacttgaa 167226
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>gb|AC007414.6| Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone
             BACR06J01, complete sequence
          Length = 172904

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   aaacttgaacaagcagtaag 125
             ||||||||||||||||||||
Sbjct: 74509 aaacttgaacaagcagtaag 74528
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>gb|AC181984.1| Pan troglodytes chromosome X clone CH251-244H4 map human ortholog p11.4,
              complete sequence
          Length = 184116

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    tagagataaatagtaaagat 341
              ||||||||||||||||||||
Sbjct: 130980 tagagataaatagtaaagat 130961
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>gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq23, complete sequence
          Length = 187313

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tagagataaatagtaaagat 341
             ||||||||||||||||||||
Sbjct: 48990 tagagataaatagtaaagat 48971
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>gb|AC020599.4|AC020599 Homo sapiens BAC clone RP11-440L13 from 4, complete sequence
          Length = 173821

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cccacccccaaatgctgaga 163
             ||||||||||||||||||||
Sbjct: 41474 cccacccccaaatgctgaga 41455
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>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 173810

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   atataattactgaagaatca 532
             ||||||||||||||||||||
Sbjct: 50603 atataattactgaagaatca 50622
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>gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, complete sequence
          Length = 188829

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   agcagcaaaaggatggatga 475
             ||||||||||||||||||||
Sbjct: 56127 agcagcaaaaggatggatga 56146
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>gb|AC151289.3| Mus musculus BAC clone RP23-364K1 from chromosome 17, complete sequence
          Length = 172662

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    tttcaacatgcaaacttgaa 114
             ||||||||||||||||||||
Sbjct: 79030 tttcaacatgcaaacttgaa 79011
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>dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1
          Length = 74342

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   tgctgttttcaacatgcaaa 108
            ||||||||||||||||||||
Sbjct: 8788 tgctgttttcaacatgcaaa 8807
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>emb|BX663516.23| Zebrafish DNA sequence from clone DKEY-16F21 in linkage group 10,
              complete sequence
          Length = 183367

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     tattgtttctgctgttttca 99
              ||||||||||||||||||||
Sbjct: 118113 tattgtttctgctgttttca 118094
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>emb|BX950852.8| Zebrafish DNA sequence from clone DKEY-154B17 in linkage group 19,
              complete sequence
          Length = 242320

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aacatgcaaacttgaacaag 118
              ||||||||||||||||||||
Sbjct: 189711 aacatgcaaacttgaacaag 189730
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>gb|AE003831.3| Drosophila melanogaster chromosome 2R, section 19 of 73 of the complete
              sequence
          Length = 275390

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    aaacttgaacaagcagtaag 125
              ||||||||||||||||||||
Sbjct: 171802 aaacttgaacaagcagtaag 171821
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>gb|AC140942.1| Gallus gallus BAC clone TAM32-50C11 from chromosome ul, complete sequence
          Length = 140346

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    agcttcagcttttccaatgt 505
              ||||||||||||||||||||
Sbjct: 106373 agcttcagcttttccaatgt 106392
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>gb|AC147718.1| Gallus gallus BAC clone CH261-18A20 from chromosome unknown, complete
              sequence
          Length = 185989

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    agcttcagcttttccaatgt 505
              ||||||||||||||||||||
Sbjct: 176222 agcttcagcttttccaatgt 176203
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>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete
              sequence
          Length = 180657

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    accccacccccaaatgctgagaaa 165
              ||||||||||||||||| ||||||
Sbjct: 117958 accccacccccaaatgcagagaaa 117981
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>emb|AL732313.9| Mouse DNA sequence from clone RP23-126F10 on chromosome 2, complete
             sequence
          Length = 91573

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 126   ccctaccattaccactaccccaccccca 153
             |||||| ||||||||||||| |||||||
Sbjct: 24845 ccctactattaccactacccaaccccca 24818


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,564,700
Number of Sequences: 3902068
Number of extensions: 5564700
Number of successful extensions: 104774
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104639
Number of HSP's gapped (non-prelim): 135
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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