ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP2E1_BOVIN (O18963) Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1) 29 4.4
2SYH_UREPA (Q9PQK6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 28 7.6

>CP2E1_BOVIN (O18963) Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1)|
          Length = 495

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 212 TSLMFLSVTLYKFFVLSSP*VRQAYVFLKFLFYLPGKY 99
           TSL  +S+    F++LSSP ++    F  +L YLPG +
Sbjct: 195 TSLRLMSLFNENFYLLSSPWIQLYNNFPDYLQYLPGSH 232



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>SYH_UREPA (Q9PQK6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 420

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 169 TKNLYSVTDKNIR-LVYFP--IAHWLPMNVQYLVKIHHGLSLAMSVFVPCFRWDRSASG 336
           +K +Y   DK+ R L   P   A  +   V+  + ++H L L +  F PCFR++R  +G
Sbjct: 63  SKEMYLFKDKSDRWLALRPEGTAGVIRAVVENKLLLNHPLPLKLMYFEPCFRYERPQAG 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,991,013
Number of Sequences: 219361
Number of extensions: 1215043
Number of successful extensions: 2635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2635
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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