ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5224_ARATH (Q94EG6) Protein At5g02240 43 3e-04
2Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor 42 3e-04
3YM58_YEAST (Q03695) Hypothetical 35.0 kDa protein in PFK2-HFA1 i... 32 0.46
4ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC ... 28 6.7

>Y5224_ARATH (Q94EG6) Protein At5g02240|
          Length = 253

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -2

Query: 186 KPEGEGTPTXDFKALFSQVTARF 118
           KPEG  TPT DFKALFSQVT+RF
Sbjct: 231 KPEGTSTPTKDFKALFSQVTSRF 253



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>Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor|
          Length = 325

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -2

Query: 186 KPEGEGTPTXDFKALFSQVTARF 118
           KPEG GTPT DFKALF+QVT +F
Sbjct: 303 KPEGTGTPTKDFKALFTQVTTKF 325



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>YM58_YEAST (Q03695) Hypothetical 35.0 kDa protein in PFK2-HFA1 intergenic|
           region
          Length = 313

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 152 SKRCSPRSQPGFESSVQEXTCISSXQGSYCMSV 54
           S+  SPR++PG+  S     C SS   S C SV
Sbjct: 225 SQPMSPRTRPGYRPSCSSSNCSSSSSSSACSSV 257



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>ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC 2.1.1.43)|
           (Trithorax-homolog protein 4) (TRX-homolog protein 4)
           (Trithorax 4) (Protein SET DOMAIN GROUP 16)
          Length = 990

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 100 SWTDDSKPGCDLGEQRFEIXSRGALXFR 183
           +W  DSK  CDL E+  E  +   + FR
Sbjct: 123 NWRKDSKSDCDLEEEEIECRNEKVVSFR 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,238,205
Number of Sequences: 219361
Number of extensions: 306315
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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