ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUT_HHV6Z (P52541) Deoxyuridine 5'-triphosphate nucleotidohydrol... 30 4.6
2CARB_STRCO (Q9KXR6) Carbamoyl-phosphate synthase large chain (EC... 29 7.8
3CRBA2_BOVIN (P26444) Beta crystallin A2 (Beta-A2-crystallin) 29 7.8

>DUT_HHV6Z (P52541) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 376

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 295 PCYA-KVGVLLYRSPADPLEFHKDTKLKYLRMPNLTSINCFPSLTVLAQPL 146
           PCY  +   ++  SP +   FH  T  +++  PN  +I CF ++ V A  L
Sbjct: 236 PCYIPEPWEMINLSPPESAVFHLKTCREFIIKPNSYTIQCFDAMYVCADEL 286



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>CARB_STRCO (Q9KXR6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1102

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 490 WAVERILRTDEIAYEISGNQNVST-ALVEAFRHGDFRTRQIAE 365
           W V+++    EIA EI+ ++ ++   L EA RHG F  +QIAE
Sbjct: 463 WFVDQLFLIKEIADEIAESRELTADLLTEAKRHG-FSDQQIAE 504



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>CRBA2_BOVIN (P26444) Beta crystallin A2 (Beta-A2-crystallin)|
          Length = 196

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 310 SSKISQRNWAAYQHXXXXXXQFVLS*SHHA*KLR 411
           S K+S   W AYQ+      Q+VL   HH+ + R
Sbjct: 141 SLKVSSGAWVAYQYPGYRGYQYVLERDHHSGEFR 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,131,073
Number of Sequences: 219361
Number of extensions: 1375166
Number of successful extensions: 3467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3452
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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