Clone Name | rbah63j02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY104932.1| Zea mays PCO147149 mRNA sequence Length = 2304 Score = 220 bits (111), Expect = 4e-54 Identities = 288/347 (82%) Strand = Plus / Minus Query: 163 cgcttctcccttgggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatg 222 ||||||||||| ||||| |||||||| |||||||| || || | ||||||||| |||||| Sbjct: 1946 cgcttctccctggggaagcccaggagggcaaggatgagggcgatgaagctgccgttgatg 1887 Query: 223 aggcccctgaggatcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcg 282 |||||||| |||||| |||||||||| | ||||||||| |||||||| ||||||||||| Sbjct: 1886 aggcccctcaggatcttctgcttctccgtcgtgtagggcgggtacctggcgttcgcctcc 1827 Query: 283 ccgccaaacccgcggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttg 342 |||||||| ||||||||||| || ||||| ||| ||||||||||||||| ||||||| Sbjct: 1826 ccgccaaagccgcggatcaggactcccttcttgtggctgaagcagtcgaagccgaacttg 1767 Query: 343 ccgtggtacgaccccgtgccgctgtcgcccacgccgccgaacggcaaatgcgggttcgtc 402 |||||||| ||||| | ||||||||||| ||||||||||| |||| | |||||| || Sbjct: 1766 ccgtggtagcaccccatcccgctgtcgccgacgccgccgaagggcatgtacgggttggtg 1707 Query: 403 aggtgtagggcgacgtcgttgacgagcatgcctcctgccgagacgtttgagacgaaatct 462 || ||||| || |||||| || ||||| |||||||| | |||| ||| || || || Sbjct: 1706 agatgtagcgcagtgtcgtttacaagcatccctcctgcagggacgcttgccacaaactcc 1647 Query: 463 tgttgcagtttcttgtccttggtgaagaggtaggccgcgagtggctt 509 | |||||| ||| | | ||||||||| |||||||| || |||||||| Sbjct: 1646 tcttgcagcttcctattcttggtgaaaaggtaggcggctagtggctt 1600
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 212 bits (107), Expect = 9e-52 Identities = 197/227 (86%) Strand = Plus / Minus Query: 163 cgcttctcccttgggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatg 222 ||||||||||| ||||| || ||||| |||||||| || || | ||||||||| |||||| Sbjct: 15869 cgcttctccctggggaagccgaggagagcaaggatgagggcgatgaagctgccgttgatg 15810 Query: 223 aggcccctgaggatcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcg 282 || || || |||||| |||||||||| | ||||||||| |||||||| |||||||||||| Sbjct: 15809 agtcctctcaggatcttctgcttctccgtcgtgtagggcgggtacctggcgttcgcctcg 15750 Query: 283 ccgccaaacccgcggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttg 342 || ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||| Sbjct: 15749 ccaccaaagccgcggatcagcaccgccttcttgtggctgaagcagtcgaagccgaacttg 15690 Query: 343 ccgtggtacgaccccgtgccgctgtcgcccacgccgccgaacggcaa 389 |||||||| ||||| | |||||||||||||||||||| || ||||| Sbjct: 15689 ccgtggtagcaccccatcccgctgtcgcccacgccgccaaagggcaa 15643 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 465 ttgcagtttcttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||| ||||||| ||||||||| |||||||| ||||||||||| Sbjct: 15458 ttgcagcttcttgttcttggtgaaaaggtaggcagcgagtggctt 15414
>dbj|AK104746.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E07, full insert sequence Length = 1720 Score = 125 bits (63), Expect = 2e-25 Identities = 267/335 (79%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 1521 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 1462 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 1461 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 1402 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 1401 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 1342 Query: 355 cccgtgccgctgtcgcccacgccgccgaacggcaaatgcgggttcgtcaggtgtagggcg 414 || | ||||||||||| || ||||| || |||| ||||| || | || || ||||| Sbjct: 1341 ccgatcccgctgtcgccgactccgccaaatggcaggtgcggattggcgagatgcagggca 1282 Query: 415 acgtcgttgacgagcatgcctcctgccgagacgtttgagacgaaatcttgttgcagtttc 474 || || || || ||||| |||||||| | ||| || || || || || | |||||||||| Sbjct: 1281 acatcatttacaagcattcctcctgctgggacattggacacaaattcctcttgcagtttc 1222 Query: 475 ttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||| || ||||| || |||||||| Sbjct: 1221 ttgtccttggtgaaaagataggctgcaagtggctt 1187
>dbj|AK104603.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H06, full insert sequence Length = 1720 Score = 125 bits (63), Expect = 2e-25 Identities = 267/335 (79%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 1521 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 1462 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 1461 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 1402 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 1401 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 1342 Query: 355 cccgtgccgctgtcgcccacgccgccgaacggcaaatgcgggttcgtcaggtgtagggcg 414 || | ||||||||||| || ||||| || |||| ||||| || | || || ||||| Sbjct: 1341 ccgatcccgctgtcgccgactccgccaaatggcaggtgcggattggcgagatgcagggca 1282 Query: 415 acgtcgttgacgagcatgcctcctgccgagacgtttgagacgaaatcttgttgcagtttc 474 || || || || ||||| |||||||| | ||| || || || || || | |||||||||| Sbjct: 1281 acatcatttacaagcattcctcctgctgggacattggacacaaattcctcttgcagtttc 1222 Query: 475 ttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||| || ||||| || |||||||| Sbjct: 1221 ttgtccttggtgaaaagataggctgcaagtggctt 1187
>dbj|AK068297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146E24, full insert sequence Length = 1922 Score = 125 bits (63), Expect = 2e-25 Identities = 267/335 (79%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 1522 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 1463 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 1462 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 1403 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 1402 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 1343 Query: 355 cccgtgccgctgtcgcccacgccgccgaacggcaaatgcgggttcgtcaggtgtagggcg 414 || | ||||||||||| || ||||| || |||| ||||| || | || || ||||| Sbjct: 1342 ccgatcccgctgtcgccgactccgccaaatggcaggtgcggattggcgagatgcagggca 1283 Query: 415 acgtcgttgacgagcatgcctcctgccgagacgtttgagacgaaatcttgttgcagtttc 474 || || || || ||||| |||||||| | ||| || || || || || | |||||||||| Sbjct: 1282 acatcatttacaagcattcctcctgctgggacattggacacaaattcctcttgcagtttc 1223 Query: 475 ttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||| || ||||| || |||||||| Sbjct: 1222 ttgtccttggtgaaaagataggctgcaagtggctt 1188
>gb|AY111556.1| Zea mays CL5928_-3 mRNA sequence Length = 616 Score = 121 bits (61), Expect = 3e-24 Identities = 181/226 (80%) Strand = Plus / Plus Query: 163 cgcttctcccttgggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatg 222 ||||||||||| ||||| |||||||| |||||||| ||||| | ||||||||| |||||| Sbjct: 273 cgcttctccctcgggaagcccaggagggcaaggatgagcgcgatgaagctgccgttgatg 332 Query: 223 aggcccctgaggatcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcg 282 || | |||||| |||||||||| | || |||||| |||||||| |||||||||||| Sbjct: 333 agnnnnntcaggatcttctgcttctccgtcgggtagggcgggtacctggcgttcgcctcg 392 Query: 283 ccgccaaacccgcggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttg 342 |||||||| ||| ||| ||| | ||| ||||||||||||| | ||||||| Sbjct: 393 ccgccaaagccggggaccaggannnnnttcttnnnnntgaagcagtcgaacccgaacttg 452 Query: 343 ccgtggtacgaccccgtgccgctgtcgcccacgccgccgaacggca 388 ||| |||| ||||| | ||| ||||||| ||||||||||| |||| Sbjct: 453 ccggggtagcaccccatcccgttgtcgccgacgccgccgaagggca 498
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 99.6 bits (50), Expect = 9e-18 Identities = 167/206 (81%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 141667 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 141608 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 141607 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 141548 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 141547 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 141488 Query: 355 cccgtgccgctgtcgcccacgccgcc 380 || | ||||||||||| || ||||| Sbjct: 141487 ccgatcccgctgtcgccgactccgcc 141462 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 465 ttgcagtttcttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||||||||||||| || ||||| || |||||||| Sbjct: 141281 ttgcagtttcttgtccttggtgaaaagataggctgcaagtggctt 141237
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 99.6 bits (50), Expect = 9e-18 Identities = 167/206 (81%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 11520 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 11461 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 11460 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 11401 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 11400 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 11341 Query: 355 cccgtgccgctgtcgcccacgccgcc 380 || | ||||||||||| || ||||| Sbjct: 11340 ccgatcccgctgtcgccgactccgcc 11315 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 465 ttgcagtttcttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||||||||||||| || ||||| || |||||||| Sbjct: 11134 ttgcagtttcttgtccttggtgaaaagataggctgcaagtggctt 11090
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 99.6 bits (50), Expect = 9e-18 Identities = 167/206 (81%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 4360157 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 4360098 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 4360097 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 4360038 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 4360037 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 4359978 Query: 355 cccgtgccgctgtcgcccacgccgcc 380 || | ||||||||||| || ||||| Sbjct: 4359977 ccgatcccgctgtcgccgactccgcc 4359952 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 465 ttgcagtttcttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||||||||||||| || ||||| || |||||||| Sbjct: 4359771 ttgcagtttcttgtccttggtgaaaagataggctgcaagtggctt 4359727
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 99.6 bits (50), Expect = 9e-18 Identities = 167/206 (81%) Strand = Plus / Minus Query: 175 gggaatcccaggagcgcaaggatcagcgcaaagaagctgcccttgatgaggcccctgagg 234 ||||| |||||||| ||||| ||||| |||||||||||||| || || || || || ||| Sbjct: 4368851 gggaagcccaggagggcaagaatcagtgcaaagaagctgccgtttatcagtcctctcagg 4368792 Query: 235 atcctctgcttctctgccgtgtagggtgggtacctcgcgttcgcctcgccgccaaacccg 294 ||| |||||||||| |||||| ||||||||||| || | ||||| || || || ||| Sbjct: 4368791 atcttctgcttctcaatcgtgtaaggtgggtacctagcagttgcctcccctccgaagccg 4368732 Query: 295 cggatcagcaccgccttccggtgagtgaagcagtcgaagctgaacttgccgtggtacgac 354 |||||||| || |||||| ||| ||||| || ||||||||||| ||||| ||||| || Sbjct: 4368731 cggatcaggacggccttcttgtgggtgaaacaatcgaagctgaatttgccatggtaggag 4368672 Query: 355 cccgtgccgctgtcgcccacgccgcc 380 || | ||||||||||| || ||||| Sbjct: 4368671 ccgatcccgctgtcgccgactccgcc 4368646 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 465 ttgcagtttcttgtccttggtgaagaggtaggccgcgagtggctt 509 |||||||||||||||||||||||| || ||||| || |||||||| Sbjct: 4368465 ttgcagtttcttgtccttggtgaaaagataggctgcaagtggctt 4368421
>gb|AY110367.1| Zea mays CL5928_2 mRNA sequence Length = 1119 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 163 cgcttctcccttgggaatcccaggagcgcaaggatcagcgcaaagaagctgcc 215 ||||||||||| ||||| |||||||| |||||||| || || | ||||||||| Sbjct: 1066 cgcttctccctggggaagcccaggagggcaaggatgagggcgatgaagctgcc 1118
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 369 gcccacgccgccgaacggcaaat 391 ||||||||||||||||||||||| Sbjct: 237025 gcccacgccgccgaacggcaaat 237047
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 356 ccgtgccgctgtcgcccacgccgccg 381 ||||||||||||||| |||||||||| Sbjct: 4203785 ccgtgccgctgtcgcgcacgccgccg 4203810
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 359 tgccgctgtcgcccacgccgcc 380 |||||||||||||||||||||| Sbjct: 50181 tgccgctgtcgcccacgccgcc 50202
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 476 tgtccttggtgaagaggtaggc 497 |||||||||||||||||||||| Sbjct: 3953947 tgtccttggtgaagaggtaggc 3953926 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 tacctcgcgttcgcctcgccgcca 288 ||||||||| |||||||||||||| Sbjct: 20268045 tacctcgcgctcgcctcgccgcca 20268022
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 476 tgtccttggtgaagaggtaggc 497 |||||||||||||||||||||| Sbjct: 3953921 tgtccttggtgaagaggtaggc 3953900 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 tacctcgcgttcgcctcgccgcca 288 ||||||||| |||||||||||||| Sbjct: 20194259 tacctcgcgctcgcctcgccgcca 20194236
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 476 tgtccttggtgaagaggtaggc 497 |||||||||||||||||||||| Sbjct: 115923 tgtccttggtgaagaggtaggc 115902
>ref|XM_522084.1| PREDICTED: Pan troglodytes similar to unc-93 homolog B1; unc93 (C.elegans) homolog B; unc-93 related protein; unc93 (C. elegans) homolog B1 (LOC466685), mRNA Length = 3441 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 2694 gtcgaaggtgaacttgccgtggtac 2670
>ref|NM_001031615.1| Homo sapiens aldehyde dehydrogenase 3 family, member B2 (ALDH3B2), transcript variant 2, mRNA Length = 2504 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1300 gtcgaaggtgaacttgccgtggtac 1276
>ref|NM_000695.3| Homo sapiens aldehyde dehydrogenase 3 family, member B2 (ALDH3B2), transcript variant 1, mRNA Length = 2660 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1456 gtcgaaggtgaacttgccgtggtac 1432
>gb|BC007685.2| Homo sapiens aldehyde dehydrogenase 3 family, member B2, transcript variant 2, mRNA (cDNA clone MGC:3627 IMAGE:3636326), complete cds Length = 2512 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1300 gtcgaaggtgaacttgccgtggtac 1276
>ref|XM_765917.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_154_29891_28749) partial mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 aagcagtcgaagctgaacttgccgt 346 |||||||||| |||||||||||||| Sbjct: 619 aagcagtcgatgctgaacttgccgt 643
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence Length = 151183 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 227 ccctgaggatcctctgcttctctgc 251 ||||||| ||||||||||||||||| Sbjct: 89003 ccctgagcatcctctgcttctctgc 89027
>emb|AL049764.4|HS362J20 Human DNA sequence from clone RP3-362J20 on chromosome 22q13.1-13.31, complete sequence Length = 28247 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gtactggagaagggagggggc 149 ||||||||||||||||||||| Sbjct: 16649 gtactggagaagggagggggc 16629
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 ccgtgccgctgtcgcccacgccgcc 380 ||||||||||||||| ||||||||| Sbjct: 273059 ccgtgccgctgtcgcgcacgccgcc 273083
>gb|BT008172.1| Synthetic construct Homo sapiens aldehyde dehydrogenase 3 family, member B2 mRNA, partial cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1017 gtcgaaggtgaacttgccgtggtac 993
>gb|BT006810.1| Homo sapiens aldehyde dehydrogenase 3 family, member B2 mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1017 gtcgaaggtgaacttgccgtggtac 993
>dbj|AK092464.1| Homo sapiens cDNA FLJ35145 fis, clone PLACE6009853, highly similar to ALDEHYDE DEHYDROGENASE 8 (EC 1.2.1.5) Length = 2706 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1513 gtcgaaggtgaacttgccgtggtac 1489
>gb|AY892323.1| Synthetic construct Homo sapiens clone FLH014470.01L aldehyde dehydrogenase 3 family member B2 (ALDH3B2) mRNA, partial cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1017 gtcgaaggtgaacttgccgtggtac 993
>gb|AY892322.1| Synthetic construct Homo sapiens clone FLH014469.01L aldehyde dehydrogenase 3 family member B2 (ALDH3B2) mRNA, partial cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1017 gtcgaaggtgaacttgccgtggtac 993
>gb|AY889843.1| Synthetic construct Homo sapiens clone FLH014474.01X aldehyde dehydrogenase 3 family member B2 (ALDH3B2) mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1017 gtcgaaggtgaacttgccgtggtac 993
>gb|AY889842.1| Synthetic construct Homo sapiens clone FLH014473.01X aldehyde dehydrogenase 3 family member B2 (ALDH3B2) mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1017 gtcgaaggtgaacttgccgtggtac 993
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 359 tgccgctgtcgcccacgccgccgaacggc 387 ||||||| |||||||||||||||||||| Sbjct: 1986643 tgccgcttgcgcccacgccgccgaacggc 1986615
>gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromosome ul, complete sequence Length = 142253 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 agggagggggctcagctcagc 159 ||||||||||||||||||||| Sbjct: 112901 agggagggggctcagctcagc 112881
>gb|U37519.1|HSU37519 Human aldehyde dehydrogenase (ALDH8) mRNA, complete cds Length = 2827 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 1633 gtcgaaggtgaacttgccgtggtac 1609
>emb|AL929166.7| Mouse DNA sequence from clone RP23-323D9 on chromosome 2, complete sequence Length = 130808 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 207 gaagctgcccttgatgaggcccctgagga 235 |||||||||| ||| |||||||||||||| Sbjct: 67788 gaagctgcccctgaggaggcccctgagga 67760
>dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655M14, complete sequences Length = 174074 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gtcgaagctgaacttgccgtggtac 351 ||||||| ||||||||||||||||| Sbjct: 61750 gtcgaaggtgaacttgccgtggtac 61774
>ref|XM_473356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1500 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 361 ccgctgtcgcccacgccgccgaacggca 388 ||||| ||||| |||||||||||||||| Sbjct: 1307 ccgctctcgccgacgccgccgaacggca 1280
>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence Length = 192476 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 acgaaatcttgttgcagttt 473 |||||||||||||||||||| Sbjct: 71653 acgaaatcttgttgcagttt 71634 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 acgaaatcttgttgcagttt 473 |||||||||||||||||||| Sbjct: 68721 acgaaatcttgttgcagttt 68702
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 359 tgccgctgtcgcccacgccgccgaacgg 386 ||||||||||||| | |||||||||||| Sbjct: 3134338 tgccgctgtcgccgatgccgccgaacgg 3134365 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 360 gccgctgtcgcccacgccgccgaacggc 387 |||||||||||| | ||||||||||||| Sbjct: 1938162 gccgctgtcgccgaagccgccgaacggc 1938189
>ref|XM_652793.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0281.2), mRNA Length = 1362 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 ttggtgaagaggtaggccgcgagt 504 |||| ||||||||||||||||||| Sbjct: 1058 ttggagaagaggtaggccgcgagt 1035
>ref|XM_445691.1| Candida glabrata CBS138, CAGL0D06578g partial mRNA Length = 261 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cgctgtcgcccacgccgccg 381 |||||||||||||||||||| Sbjct: 35 cgctgtcgcccacgccgccg 54
>gb|AF464932.1| Oryza sativa (indica cultivar-group) aldehyde dehydrogenase (ALDH1) mRNA, complete cds Length = 1907 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 361 ccgctgtcgcccacgccgccgaacggca 388 ||||| ||||| |||||||||||||||| Sbjct: 1441 ccgctctcgccgacgccgccgaacggca 1414
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 agggcgacgtcgttgacgagcatg 432 |||| ||||||||||||||||||| Sbjct: 125825 agggagacgtcgttgacgagcatg 125848
>ref|XM_546645.2| PREDICTED: Canis familiaris similar to aldehyde dehydrogenase 3 family, member A1, transcript variant 1 (LOC489526), mRNA Length = 1799 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 339 cttgccgtggtacgaccccgtgccgctgtcgcccac 374 |||||||||||| || ||| ||||||||| |||||| Sbjct: 1495 cttgccgtggtaggatcccatgccgctgttgcccac 1460
>ref|XM_858912.1| PREDICTED: Canis familiaris similar to aldehyde dehydrogenase 3 family, member A1, transcript variant 2 (LOC489526), mRNA Length = 1469 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 339 cttgccgtggtacgaccccgtgccgctgtcgcccac 374 |||||||||||| || ||| ||||||||| |||||| Sbjct: 1165 cttgccgtggtaggatcccatgccgctgttgcccac 1130
>emb|AL596282.5| Human DNA sequence from clone RP11-249M7 on chromosome 13, complete sequence Length = 34777 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgtactggagaagggagggg 147 |||||||||||||||||||| Sbjct: 2297 tgtactggagaagggagggg 2316
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cgcgttgatgtgcgtgatgc 535 |||||||||||||||||||| Sbjct: 3171657 cgcgttgatgtgcgtgatgc 3171638
>emb|AL136528.11| Human DNA sequence from clone RP5-1092A11 on chromosome 1p36.2-36.33 Contains the 5' end of the gene for a novel protein (FLJ32825), a novel gene (KIAA0495), two novel genes, the TP73 gene for tumor protein p73, the 5' end of the WDR8 gene for WD repeat domain 8 and five CpG islands, complete sequence Length = 138941 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 ggagaagggagggggctcagctca 157 |||| ||||||||||||||||||| Sbjct: 81107 ggagcagggagggggctcagctca 81084
>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence Length = 651701 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cgctgtcgcccacgccgccg 381 |||||||||||||||||||| Sbjct: 625689 cgctgtcgcccacgccgccg 625708
>gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, complete sequence Length = 202033 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tttgagacgaaatcttgttg 467 |||||||||||||||||||| Sbjct: 126034 tttgagacgaaatcttgttg 126015
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 ccgctgtcgcccacgccgccgaacggca 388 ||||| ||||| |||||||||||||||| Sbjct: 85586 ccgctctcgccgacgccgccgaacggca 85613
>gb|AC113298.14| Mus musculus chromosome 7, clone RP23-428N8, complete sequence Length = 181555 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ttacagtgcagaacatgaat 114 |||||||||||||||||||| Sbjct: 170061 ttacagtgcagaacatgaat 170042
>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence Length = 164220 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 atcttgttgcagtttcttgt 478 |||||||||||||||||||| Sbjct: 75198 atcttgttgcagtttcttgt 75217
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 360 gccgctgtcgcccacgccgccgaacggc 387 |||||||||||||||| ||| ||||||| Sbjct: 2490622 gccgctgtcgcccacggcgcggaacggc 2490649
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 ccgctgtcgcccacgccgccgaacggca 388 ||||| ||||| |||||||||||||||| Sbjct: 27017885 ccgctctcgccgacgccgccgaacggca 27017912
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 ccgctgtcgcccacgccgccgaacggca 388 ||||| || ||||||||||||||||||| Sbjct: 1477383 ccgctctcccccacgccgccgaacggca 1477410
>gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, complete sequence Length = 207596 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cactttacagtgcagaacat 110 |||||||||||||||||||| Sbjct: 107272 cactttacagtgcagaacat 107291
>dbj|AK071169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081H03, full insert sequence Length = 2055 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 361 ccgctgtcgcccacgccgccgaacggca 388 ||||| ||||| |||||||||||||||| Sbjct: 1582 ccgctctcgccgacgccgccgaacggca 1555
>gb|AF109131.1|AF109131 Sinorhizobium meliloti homogentisate dioxygenase (hmgA) and maleylacetoacetate isomerase (maiA) genes, complete cds; and unknown gene Length = 3256 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 agggcgacgtcgttgacgagcatg 432 |||| ||||||||||||||||||| Sbjct: 2024 agggagacgtcgttgacgagcatg 2001
>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152862 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 tacctcgcgttcgcctcgccgcca 288 ||||||||| |||||||||||||| Sbjct: 132279 tacctcgcgctcgcctcgccgcca 132256
>emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on chromosome 4, complete sequence Length = 246021 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ccctgaggatcctctgcttc 246 |||||||||||||||||||| Sbjct: 240849 ccctgaggatcctctgcttc 240868
>emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chromosome 11, complete sequence Length = 161787 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tctcccttgggaatcccagg 186 |||||||||||||||||||| Sbjct: 152184 tctcccttgggaatcccagg 152165
>dbj|AB055067.1| Homo sapiens hDNp73 gene for deltaN p73, exon 3', partial cds Length = 2936 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 ggagaagggagggggctcagctca 157 |||| ||||||||||||||||||| Sbjct: 44 ggagcagggagggggctcagctca 67 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,927,743 Number of Sequences: 3902068 Number of extensions: 3927743 Number of successful extensions: 80618 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79908 Number of HSP's gapped (non-prelim): 706 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)