ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63i24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL32_CAEEL (P34423) Hypothetical protein F44B9.2 30 2.7
2ETF2_YMTV (Q9QB84) Early transcription factor 82 kDa subunit (VE... 29 5.9
3DHCR7_RAT (Q9Z2Z8) 7-dehydrocholesterol reductase (EC 1.3.1.21) ... 29 5.9

>YL32_CAEEL (P34423) Hypothetical protein F44B9.2|
          Length = 503

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 148 CLCT---SGLYILNLVCKWSELVYIISKAVFGMLFF 50
           C+C    SG+Y L  + +W+EL Y +S+A   ML F
Sbjct: 356 CVCGEIFSGIYELTPIGQWTELEYKLSEAYIDMLAF 391



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>ETF2_YMTV (Q9QB84) Early transcription factor 82 kDa subunit (VETF large|
           subunit)
          Length = 713

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 105 LHTRLSIYNPDVHKHCLHFTYYVHELRSIVSSSL 206
           L T L+I+NP++HK  +  T  + +++  +S+ L
Sbjct: 41  LKTHLNIHNPEIHKRHILLTLKIRQVKGYLSNLL 74



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>DHCR7_RAT (Q9Z2Z8) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC|
           reductase) (Sterol delta-7-reductase)
          Length = 471

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 72  ALEIMYTSSDHLHTRLSIYNPDVHKHCLHFTYYVHELRSIVSSSLT---DHLLLIFFIIL 242
           A+E  YTS+D L  R  +          HF Y   +L   ++  L     HLL  F+II 
Sbjct: 373 AIECSYTSADGLKHRSKLLVSGFWGVARHFNY-TGDLMGSLAYCLACGGGHLLPYFYIIY 431

Query: 243 PSCARRHKCL 272
            +    H+CL
Sbjct: 432 MTILLTHRCL 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,316,093
Number of Sequences: 219361
Number of extensions: 1002206
Number of successful extensions: 1770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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