ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63i24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, comple... 44 0.38
2gb|AC007610.10| Homo sapiens chromosome 16 clone RP11-429P3, com... 42 1.5
3gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosom... 42 1.5
4gb|AC123849.3| Mus musculus BAC clone RP23-460B12 from chromosom... 42 1.5
5emb|CR378681.1| Photobacterium profundum SS9 chromosome 2; segme... 42 1.5
6gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 ma... 42 1.5
7gb|AC122861.4| Mus musculus BAC clone RP23-140G16 from 19, compl... 42 1.5
8emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chr... 42 1.5
9gb|M92354.1|ATHANSYNAB Arabidopsis thaliana anthranilate synthas... 42 1.5
10ref|XM_511035.1| PREDICTED: Pan troglodytes CCCTC-binding factor... 40 5.9
11gb|AF145477.1|F145468S10 Homo sapiens transcriptional repressor ... 40 5.9
12gb|AC149129.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 5.9
13gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom... 40 5.9
14gb|AC152826.2| Mus musculus BAC clone RP23-111C21 from chromosom... 40 5.9
15ref|XM_878425.1| PREDICTED: Bos taurus CCCTC-binding factor, tra... 40 5.9
16ref|XM_866387.1| PREDICTED: Bos taurus CCCTC-binding factor, tra... 40 5.9
17gb|BC058240.1| Mus musculus CCCTC-binding factor, mRNA (cDNA clo... 40 5.9
18gb|BC049131.1| Mus musculus CCCTC-binding factor, mRNA (cDNA clo... 40 5.9
19gb|BC046398.1| Mus musculus CCCTC-binding factor, mRNA (cDNA clo... 40 5.9
20ref|NM_006565.2| Homo sapiens CCCTC-binding factor (zinc finger ... 40 5.9
21ref|NM_181322.2| Mus musculus CCCTC-binding factor (Ctcf), mRNA 40 5.9
22ref|NM_007794.1| Mus musculus CCCTC-binding factor (Ctcf), mRNA 40 5.9
23gb|CP000234.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 5.9
24gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome... 40 5.9
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
26gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complet... 40 5.9
27ref|XM_859360.1| PREDICTED: Canis familiaris similar to Transcri... 40 5.9
28ref|XM_859339.1| PREDICTED: Canis familiaris similar to Transcri... 40 5.9
29ref|XM_536815.2| PREDICTED: Canis familiaris similar to Transcri... 40 5.9
30gb|AC146910.16| Medicago truncatula clone mth2-59i21, complete s... 40 5.9
31ref|NM_205332.3| Gallus gallus CCCTC-binding factor (zinc finger... 40 5.9
32emb|AL137142.20| Human DNA sequence from clone RP11-173P16 on ch... 40 5.9
33emb|AL022312.7|HS1104E15 Human DNA sequence from clone RP5-1104E... 40 5.9
34gb|AC005913.2| Homo sapiens Xp22-175-176 BAC GSHB-484O17 (Genome... 40 5.9
35emb|Z22605.1|GDCTCFPRA G.domesticus CTCF protein mRNA 40 5.9
36emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 5.9
37emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22,... 40 5.9
38gb|AC009095.7| Homo sapiens chromosome 16 clone RP11-430J6, comp... 40 5.9
39emb|AJ621746.1| Gallus gallus partial P4HA2 gene exons 1-14 and ... 40 5.9
40emb|BX530409.7| Zebrafish DNA sequence from clone DKEY-69K9 in l... 40 5.9
41emb|BX571955.15| Zebrafish DNA sequence from clone DKEY-27B3 in ... 40 5.9
42dbj|AK093395.1| Homo sapiens cDNA FLJ36076 fis, clone TESTI20197... 40 5.9
43emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 40 5.9
44gb|AC008416.8| Homo sapiens chromosome 5 clone CTC-284H5, comple... 40 5.9
45dbj|AK133842.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 5.9
46ref|NM_031824.1| Rattus norvegicus CCCTC-binding factor (Ctcf), ... 40 5.9
47emb|CR523248.1| Gallus gallus finished cDNA, clone ChEST966j9 40 5.9
48emb|CR405998.1| Gallus gallus finished cDNA, clone ChEST605f15 40 5.9
49emb|CR386100.1| Gallus gallus finished cDNA, clone ChEST465p5 40 5.9
50gb|AC010530.8| Homo sapiens chromosome 16 clone RP11-167P11, com... 40 5.9
51dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
52dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
53dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
54dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
55gb|AC010708.10|AC010708 Drosophila melanogaster, chromosome X, r... 40 5.9
56gb|AC012098.9|AC012098 Drosophila melanogaster, chromosome X, re... 40 5.9
57dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
58emb|BX088592.12| Zebrafish DNA sequence from clone DKEYP-61C12 i... 40 5.9
59dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 5.9
60dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 5.9
61dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
62gb|AC009513.2|F12P19 Sequence of BAC F12P19 from Arabidopsis tha... 40 5.9
63gb|AC154719.2| Mus musculus BAC clone RP24-370O15 from 16, compl... 40 5.9
64emb|AL953867.18| Zebrafish DNA sequence from clone CH211-258L4 i... 40 5.9
65emb|CR925790.6| Zebrafish DNA sequence from clone DKEY-275J21 in... 40 5.9
66gb|AF133731.2|AF133731 Rattus norvegicus 11-zinc finger protein ... 40 5.9
67gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 ... 40 5.9
68emb|CR925755.8| Zebrafish DNA sequence from clone CH211-138M24 i... 40 5.9
69gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 5.9
70gb|U51037.1|MMU51037 Mus musculus 11-zinc-finger transcription f... 40 5.9
71emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
72emb|CT030168.3| M.truncatula DNA sequence from clone MTH2-16A18 ... 40 5.9
73emb|CT025635.2| Pan troglodytes chromosome X clone RP43-046H06 m... 40 5.9
74dbj|AB209793.1| Homo sapiens mRNA for CCCTC-binding factor (zinc... 40 5.9
75gb|U25435.1|HSU25435 Human transcriptional repressor (CTCF) mRNA... 40 5.9
76emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chr... 40 5.9 
>gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, complete sequence
          Length = 177948

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 288    tcacagctctgtaaacagaaaa 309
              ||||||||||||||||||||||
Sbjct: 103259 tcacagctctgtaaacagaaaa 103238
to top
>gb|AC007610.10| Homo sapiens chromosome 16 clone RP11-429P3, complete sequence
          Length = 214786

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 294    ctctgtaaacagaaaattttgaggc 318
              ||||||||||||| |||||||||||
Sbjct: 107550 ctctgtaaacagataattttgaggc 107574
to top
>gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosome 16, complete
             sequence
          Length = 193253

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   tatttttcattattttaccct 246
             |||||||||||||||||||||
Sbjct: 22972 tatttttcattattttaccct 22992
to top
>gb|AC123849.3| Mus musculus BAC clone RP23-460B12 from chromosome 16, complete sequence
          Length = 172697

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 226    tatttttcattattttaccct 246
              |||||||||||||||||||||
Sbjct: 166600 tatttttcattattttaccct 166620
to top
>emb|CR378681.1| Photobacterium profundum SS9 chromosome 2; segment 7/7
          Length = 147669

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 222   ttgatatttttcattatttta 242
             |||||||||||||||||||||
Sbjct: 36215 ttgatatttttcattatttta 36195
to top
>gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete
             sequence
          Length = 90665

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 157   acttcacatattatgtacatgagct 181
             ||||||||| |||||||||||||||
Sbjct: 52401 acttcacatgttatgtacatgagct 52377
to top
>gb|AC122861.4| Mus musculus BAC clone RP23-140G16 from 19, complete sequence
          Length = 205150

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 236    tattttaccctcatgtgcccg 256
              |||||||||||||||||||||
Sbjct: 121858 tattttaccctcatgtgcccg 121838
to top
>emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chromosome X, complete
             sequence
          Length = 230186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 300   aaacagaaaattttgaggctg 320
             |||||||||||||||||||||
Sbjct: 89871 aaacagaaaattttgaggctg 89851
to top
>gb|M92354.1|ATHANSYNAB Arabidopsis thaliana anthranilate synthase alpha subunit gene,
            complete cds
          Length = 6661

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 157  acttcacatattatgtacatgagct 181
            ||||||||| |||||||||||||||
Sbjct: 5125 acttcacatgttatgtacatgagct 5149
to top
>ref|XM_511035.1| PREDICTED: Pan troglodytes CCCTC-binding factor (zinc finger protein)
            (LOC454169), mRNA
          Length = 3520

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3397 tgatatttttcattatttta 3416
to top
>gb|AF145477.1|F145468S10 Homo sapiens transcriptional repressor CTCF (CTCF) gene, exon 10 and
            complete cds
          Length = 2348

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 2024 tgatatttttcattatttta 2043
to top
>gb|AC149129.3| Medicago truncatula chromosome 7 BAC clone mth2-139m18, complete
             sequence
          Length = 106423

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tccaaacacagccttagaga 81
             ||||||||||||||||||||
Sbjct: 40963 tccaaacacagccttagaga 40944
to top
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
              sequence
          Length = 141691

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     ttccaaacacagccttagag 80
              ||||||||||||||||||||
Sbjct: 106537 ttccaaacacagccttagag 106518
to top
>gb|AC152826.2| Mus musculus BAC clone RP23-111C21 from chromosome 8, complete sequence
          Length = 196497

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    tgatatttttcattatttta 242
              ||||||||||||||||||||
Sbjct: 151294 tgatatttttcattatttta 151275
to top
>ref|XM_878425.1| PREDICTED: Bos taurus CCCTC-binding factor, transcript variant 4
            (LOC517097), mRNA
          Length = 2645

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 2520 tgatatttttcattatttta 2539
to top
>ref|XM_866387.1| PREDICTED: Bos taurus CCCTC-binding factor, transcript variant 2
            (LOC517097), mRNA
          Length = 3753

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3628 tgatatttttcattatttta 3647
to top
>gb|BC058240.1| Mus musculus CCCTC-binding factor, mRNA (cDNA clone MGC:68200
            IMAGE:6307925), complete cds
          Length = 3619

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3455 tgatatttttcattatttta 3474
to top
>gb|BC049131.1| Mus musculus CCCTC-binding factor, mRNA (cDNA clone MGC:61296
            IMAGE:6825952), complete cds
          Length = 3807

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3660 tgatatttttcattatttta 3679
to top
>gb|BC046398.1| Mus musculus CCCTC-binding factor, mRNA (cDNA clone MGC:51381
            IMAGE:3982679), complete cds
          Length = 3568

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3422 tgatatttttcattatttta 3441
to top
>ref|NM_006565.2| Homo sapiens CCCTC-binding factor (zinc finger protein) (CTCF), mRNA
          Length = 3797

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3656 tgatatttttcattatttta 3675
to top
>ref|NM_181322.2| Mus musculus CCCTC-binding factor (Ctcf), mRNA
          Length = 3807

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3660 tgatatttttcattatttta 3679
to top
>ref|NM_007794.1| Mus musculus CCCTC-binding factor (Ctcf), mRNA
          Length = 3840

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3701 tgatatttttcattatttta 3720
to top
>gb|CP000234.1| Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,
              complete genome
          Length = 242436

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    actattgatatttttcatta 237
              ||||||||||||||||||||
Sbjct: 135920 actattgatatttttcatta 135939
to top
>gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome 15, complete sequence
          Length = 179092

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tcacagctctgtaaacagaa 307
             ||||||||||||||||||||
Sbjct: 20318 tcacagctctgtaaacagaa 20299
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 61       ttccaaacacagccttagag 80
                ||||||||||||||||||||
Sbjct: 24730990 ttccaaacacagccttagag 24730971
to top
>gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complete sequence
          Length = 212177

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    tcacagctctgtaaacagaa 307
              ||||||||||||||||||||
Sbjct: 146796 tcacagctctgtaaacagaa 146777
to top
>ref|XM_859360.1| PREDICTED: Canis familiaris similar to Transcriptional repressor CTCF
            (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger
            protein), transcript variant 3 (LOC479684), mRNA
          Length = 2860

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 2734 tgatatttttcattatttta 2753
to top
>ref|XM_859339.1| PREDICTED: Canis familiaris similar to Transcriptional repressor CTCF
            (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger
            protein), transcript variant 2 (LOC479684), mRNA
          Length = 3950

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3824 tgatatttttcattatttta 3843
to top
>ref|XM_536815.2| PREDICTED: Canis familiaris similar to Transcriptional repressor CTCF
            (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger
            protein), transcript variant 1 (LOC479684), mRNA
          Length = 3821

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3695 tgatatttttcattatttta 3714
to top
>gb|AC146910.16| Medicago truncatula clone mth2-59i21, complete sequence
          Length = 109724

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     cgaccacttgcatacaagat 117
              ||||||||||||||||||||
Sbjct: 103582 cgaccacttgcatacaagat 103563
to top
>ref|NM_205332.3| Gallus gallus CCCTC-binding factor (zinc finger protein) (CTCF), mRNA
          Length = 4034

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3912 tgatatttttcattatttta 3931
to top
>emb|AL137142.20| Human DNA sequence from clone RP11-173P16 on chromosome 13q12.2-13.3
             Contains a novel pseudogene, the gene for heat shock 105kD
             (HSP105B) (HSP105A KIAA0201 NY-CO-25), the 5' end of a
             novel gene and two CpG islands, complete sequence
          Length = 113850

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   acagctctgtaaacagaaaatttt 313
             |||||||||| |||||||||||||
Sbjct: 74365 acagctctgtgaacagaaaatttt 74388
to top
>emb|AL022312.7|HS1104E15 Human DNA sequence from clone RP5-1104E15 on chromosome 22q12.3-13.1
             Contains the MGAT3 gene for mannosyl
             (beta-1,4-)-glycoprotein
             beta-1,4-N-acetylglucosaminyltransferase, the gene for a
             predicted protein, the ATF4 gene for activating
             transcription factor 4 (tax-responsive enhancer element
             B67) and the 5' end of the CACNA1I gene for
             voltage-dependent calcium channel, alpha 1I subunit.
             Contains ESTs, STSs, GSSs and five putative CpG islands,
             complete sequence
          Length = 112460

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   atcacagctctgtaaacaga 306
             ||||||||||||||||||||
Sbjct: 46333 atcacagctctgtaaacaga 46352
to top
>gb|AC005913.2| Homo sapiens Xp22-175-176 BAC GSHB-484O17 (Genome Systems Human BAC
             Library) complete sequence
          Length = 147124

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   cagaaaattttgaggctgct 322
             ||||||||||||||||||||
Sbjct: 54144 cagaaaattttgaggctgct 54125
to top
>emb|Z22605.1|GDCTCFPRA G.domesticus CTCF protein mRNA
          Length = 4252

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 4130 tgatatttttcattatttta 4149
to top
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     agaaaaacaacattccaaac 68
              ||||||||||||||||||||
Sbjct: 867582 agaaaaacaacattccaaac 867563
to top
>emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22, complete sequence
          Length = 171896

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   ctattgatatttttcattatttta 242
             |||||||||||| |||||||||||
Sbjct: 31633 ctattgatatttatcattatttta 31656
to top
>gb|AC009095.7| Homo sapiens chromosome 16 clone RP11-430J6, complete sequence
          Length = 84166

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   tgatatttttcattatttta 242
             ||||||||||||||||||||
Sbjct: 75787 tgatatttttcattatttta 75806
to top
>emb|AJ621746.1| Gallus gallus partial P4HA2 gene exons 1-14 and partial RIL gene exons
             1-3, BAC bCHORI92M14 clone, contig 7
          Length = 76796

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   acaagcactgcctgcacttc 161
             ||||||||||||||||||||
Sbjct: 31129 acaagcactgcctgcacttc 31148
to top
>emb|BX530409.7| Zebrafish DNA sequence from clone DKEY-69K9 in linkage group 15, complete
              sequence
          Length = 245494

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tttcattattttaccctcat 249
              ||||||||||||||||||||
Sbjct: 243455 tttcattattttaccctcat 243436
to top
>emb|BX571955.15| Zebrafish DNA sequence from clone DKEY-27B3 in linkage group 10, complete
              sequence
          Length = 272498

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aacaacattccaaacacagc 73
              ||||||||||||||||||||
Sbjct: 250351 aacaacattccaaacacagc 250332
to top
>dbj|AK093395.1| Homo sapiens cDNA FLJ36076 fis, clone TESTI2019760, highly similar to
            TRANSCRIPTIONAL REPRESSOR CTCF
          Length = 2206

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 2092 tgatatttttcattatttta 2111
to top
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ttccaaacacagccttagag 80
             ||||||||||||||||||||
Sbjct: 26509 ttccaaacacagccttagag 26490
to top
>gb|AC008416.8| Homo sapiens chromosome 5 clone CTC-284H5, complete sequence
          Length = 98597

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 215   tctactattgatatttttcattatttta 242
             |||| ||||||||||||| |||||||||
Sbjct: 45702 tctattattgatattttttattatttta 45675
to top
>dbj|AK133842.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730445L15 product:CCCTC-binding
            factor, full insert sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 1418 tgatatttttcattatttta 1437
to top
>ref|NM_031824.1| Rattus norvegicus CCCTC-binding factor (Ctcf), mRNA
          Length = 3708

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3562 tgatatttttcattatttta 3581
to top
>emb|CR523248.1| Gallus gallus finished cDNA, clone ChEST966j9
          Length = 927

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tgatatttttcattatttta 242
           ||||||||||||||||||||
Sbjct: 806 tgatatttttcattatttta 825
to top
>emb|CR405998.1| Gallus gallus finished cDNA, clone ChEST605f15
          Length = 1087

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tgatatttttcattatttta 242
           ||||||||||||||||||||
Sbjct: 966 tgatatttttcattatttta 985
to top
>emb|CR386100.1| Gallus gallus finished cDNA, clone ChEST465p5
          Length = 1071

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tgatatttttcattatttta 242
           ||||||||||||||||||||
Sbjct: 950 tgatatttttcattatttta 969
to top
>gb|AC010530.8| Homo sapiens chromosome 16 clone RP11-167P11, complete sequence
          Length = 193514

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    tgatatttttcattatttta 242
              ||||||||||||||||||||
Sbjct: 162839 tgatatttttcattatttta 162820
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 55       acaacattccaaacacagccttag 78
                |||| |||||||||||||||||||
Sbjct: 18407522 acaagattccaaacacagccttag 18407545
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      tccaaacacagccttagaga 81
               ||||||||||||||||||||
Sbjct: 6887823 tccaaacacagccttagaga 6887842
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 61       ttccaaacacagccttagag 80
                ||||||||||||||||||||
Sbjct: 24647820 ttccaaacacagccttagag 24647801
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     atatttttcattattttacc 244
               ||||||||||||||||||||
Sbjct: 3928688 atatttttcattattttacc 3928669
to top
>gb|AC010708.10|AC010708 Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone
              BACR10E05, complete sequence
          Length = 188766

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    atattatgtacatgagctac 183
              ||||||||||||||||||||
Sbjct: 172877 atattatgtacatgagctac 172858
to top
>gb|AC012098.9|AC012098 Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone
             BACR03K10, complete sequence
          Length = 188489

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   atattatgtacatgagctac 183
             ||||||||||||||||||||
Sbjct: 88254 atattatgtacatgagctac 88235
to top
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013F10
          Length = 163095

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   atatttttcattattttacc 244
             ||||||||||||||||||||
Sbjct: 50592 atatttttcattattttacc 50573
to top
>emb|BX088592.12| Zebrafish DNA sequence from clone DKEYP-61C12 in linkage group 5,
             complete sequence
          Length = 99227

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tttcattattttaccctcat 249
             ||||||||||||||||||||
Sbjct: 95388 tttcattattttaccctcat 95407
to top
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    tatttttcattattttaccc 245
              ||||||||||||||||||||
Sbjct: 249488 tatttttcattattttaccc 249469
to top
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     agaaaaacaacattccaaac 68
              ||||||||||||||||||||
Sbjct: 930938 agaaaaacaacattccaaac 930919
to top
>dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1043F11
          Length = 167137

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     tccaaacacagccttagaga 81
              ||||||||||||||||||||
Sbjct: 115718 tccaaacacagccttagaga 115737
to top
>gb|AC009513.2|F12P19 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81490

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tgatatttttcattatttta 242
             ||||||||||||||||||||
Sbjct: 20446 tgatatttttcattatttta 20427
to top
>gb|AC154719.2| Mus musculus BAC clone RP24-370O15 from 16, complete sequence
          Length = 163408

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cttcctctgcaactttaact 356
              ||||||||||||||||||||
Sbjct: 125897 cttcctctgcaactttaact 125878
to top
>emb|AL953867.18| Zebrafish DNA sequence from clone CH211-258L4 in linkage group 22,
              complete sequence
          Length = 177575

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ttgatatttttcattatttt 241
              ||||||||||||||||||||
Sbjct: 150353 ttgatatttttcattatttt 150372
to top
>emb|CR925790.6| Zebrafish DNA sequence from clone DKEY-275J21 in linkage group 10,
             complete sequence
          Length = 136117

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    aacaacattccaaacacagc 73
             ||||||||||||||||||||
Sbjct: 98495 aacaacattccaaacacagc 98476
to top
>gb|AF133731.2|AF133731 Rattus norvegicus 11-zinc finger protein (CTCF) mRNA, complete cds
          Length = 3744

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3598 tgatatttttcattatttta 3617
to top
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete
             sequence
          Length = 315109

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   atattatgtacatgagctac 183
             ||||||||||||||||||||
Sbjct: 12266 atattatgtacatgagctac 12247
to top
>emb|CR925755.8| Zebrafish DNA sequence from clone CH211-138M24 in linkage group 17,
             complete sequence
          Length = 107536

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   tattgatatttttcattatt 239
             ||||||||||||||||||||
Sbjct: 65471 tattgatatttttcattatt 65490
to top
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     gatatttttcattattttac 243
               ||||||||||||||||||||
Sbjct: 3693886 gatatttttcattattttac 3693867
to top
>gb|U51037.1|MMU51037 Mus musculus 11-zinc-finger transcription factor (CTCF) mRNA,
            complete cds
          Length = 3840

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3701 tgatatttttcattatttta 3720
to top
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     acaacattccaaacacagccttag 78
              |||| |||||||||||||||||||
Sbjct: 109445 acaagattccaaacacagccttag 109468
to top
>emb|CT030168.3| M.truncatula DNA sequence from clone MTH2-16A18 on chromosome 3,
             complete sequence
          Length = 125291

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    cgaccacttgcatacaagat 117
             ||||||||||||||||||||
Sbjct: 73775 cgaccacttgcatacaagat 73756
to top
>emb|CT025635.2| Pan troglodytes chromosome X clone RP43-046H06 map Xq28, complete
              sequence
          Length = 167178

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    cagaaaattttgaggctgct 322
              ||||||||||||||||||||
Sbjct: 101505 cagaaaattttgaggctgct 101524
to top
>dbj|AB209793.1| Homo sapiens mRNA for CCCTC-binding factor (zinc finger protein)
            variant protein
          Length = 2797

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 2683 tgatatttttcattatttta 2702
to top
>gb|U25435.1|HSU25435 Human transcriptional repressor (CTCF) mRNA, complete cds
          Length = 3780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  tgatatttttcattatttta 242
            ||||||||||||||||||||
Sbjct: 3657 tgatatttttcattatttta 3676
to top
>emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chromosome 2, complete
             sequence
          Length = 187308

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 215   tctactattgatatttttcattatttta 242
             ||||||||||||||| ||||||| ||||
Sbjct: 66244 tctactattgatattcttcattaattta 66217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,970,218
Number of Sequences: 3902068
Number of extensions: 3970218
Number of successful extensions: 92411
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92018
Number of HSP's gapped (non-prelim): 393
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top