>RDRP_TCV (P17460) Probable RNA-directed RNA polymerase (EC 2.7.7.48)|
           (Protein p88) [Contains: Protein p28]
          Length = 775

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -3

Query: 257 IAGLKRKQVGMCKTCHKPTHIQK--SMENSKKAGIWQVVVDIRILQQLRRLDSEVHVVIQ 84
           ++G++R+ V +    H P   +K  S    ++A I+Q  +D+ +  +L R D+E+   ++
Sbjct: 340 LSGIRRRLVRLAGN-HTPVPREKYPSFYKGRRATIYQKALDLYMTCRLSRKDAELKTFVK 398

Query: 83  REKL*YT 63
            EK+ +T
Sbjct: 399 AEKINFT 405

>Y300_BUCBP (Q89AI6) Hypothetical UPF0053 protein bbp_300|
          Length = 519

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 197 IQKSMENSKKAGIWQVVVDIRILQQLRRLDSEVHVV 90
           IQK+  N   AG W +V+ I IL  +  LD+ +  V
Sbjct: 113 IQKNENNKHYAGFWTIVIQIVILDSIFSLDAIITAV 148

>COS12_YEAST (P53053) Protein COS12|
          Length = 380

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 164 QPFWNFPWIFVYGLACDKF---YTSQPASS 244
           Q  WN P +F  G+ C+KF   Y S P SS
Sbjct: 324 QKIWNSPILFSDGIDCEKFFKWYFSTPVSS 353

>YMC6_SCHPO (P05511) Hypothetical 91 kDa protein in cob intron|
          Length = 807

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 257 IAGLKRKQVGMCKTCHKPTHIQKSMENSKK 168
           +A   RKQ+ +C++CH   H  K   N  K
Sbjct: 776 MAKANRKQIPLCRSCHMKLHANKLTLNEDK 805


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,677,519
Number of Sequences: 219361
Number of extensions: 1284476
Number of successful extensions: 3278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3277
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)