Clone Name | rbah63i23 |
---|---|
Clone Library Name | barley_pub |
>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence Length = 256158 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 acatgaacttcactgtccaatcttctcag 122 ||||||||||||||| |||||| |||||| Sbjct: 212656 acatgaacttcactgcccaatcctctcag 212684
>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence Length = 155557 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 ctactcatttcacaaagatac 405 ||||||||||||||||||||| Sbjct: 125166 ctactcatttcacaaagatac 125146
>gb|BT014109.1| Lycopersicon esculentum clone 133213F, mRNA sequence Length = 1299 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 catcccaacctgcttcctctt 245 ||||||||||||||||||||| Sbjct: 369 catcccaacctgcttcctctt 389
>ref|XM_749213.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g13160) partial mRNA Length = 1851 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 aagatccgaatatcaacaact 150 ||||||||||||||||||||| Sbjct: 620 aagatccgaatatcaacaact 640
>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone BACR27M12, complete sequence Length = 157766 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 ctactcatttcacaaagatac 405 ||||||||||||||||||||| Sbjct: 145793 ctactcatttcacaaagatac 145813
>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence Length = 169479 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 atatcaacaactacctgccaaatac 163 |||||||||| |||||||||||||| Sbjct: 29818 atatcaacaaatacctgccaaatac 29842
>gb|AC022404.7|AC022404 Homo sapiens chromosome 14 clone CTD-2308C24 and RP11-757H14 map 14q31, complete sequence Length = 232309 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttacaatgatatattcaaaat 63 ||||||||||||||||||||| Sbjct: 222923 ttacaatgatatattcaaaat 222903
>gb|AC011362.2|AC011362 Homo sapiens chromosome 5 clone CTC-503K11, complete sequence Length = 176029 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 attttccatggatttttgtatatgg 201 ||||| ||||||||||||||||||| Sbjct: 103680 attttgcatggatttttgtatatgg 103656
>gb|AC008509.5|AC008509 Homo sapiens chromosome 5 clone CTC-449I11, complete sequence Length = 189456 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 attttccatggatttttgtatatgg 201 ||||| ||||||||||||||||||| Sbjct: 175214 attttgcatggatttttgtatatgg 175238
>gb|AC116769.11| Mus musculus chromosome 15, clone RP23-415L16, complete sequence Length = 201535 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 94 acatgaacttcactgtccaatcttctcag 122 ||||||||||||||| |||||| |||||| Sbjct: 199590 acatgaacttcactgcccaatcctctcag 199562
>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete sequence Length = 290667 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 ctactcatttcacaaagatac 405 ||||||||||||||||||||| Sbjct: 117412 ctactcatttcacaaagatac 117432
>gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, region 37F1-37F6, P1 clone DS08491, complete sequence Length = 60040 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 ctactcatttcacaaagatac 405 ||||||||||||||||||||| Sbjct: 30479 ctactcatttcacaaagatac 30459
>gb|AC007889.9| Drosophila melanogaster clone BACR48E12, complete sequence Length = 182182 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 caatgtggcaatgttgcaaa 273 |||||||||||||||||||| Sbjct: 122327 caatgtggcaatgttgcaaa 122346
>gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete sequence Length = 184662 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 caatgtggcaatgttgcaaa 273 |||||||||||||||||||| Sbjct: 39790 caatgtggcaatgttgcaaa 39809
>emb|BX936301.8| Zebrafish DNA sequence from clone CH211-261H10 in linkage group 9, complete sequence Length = 112250 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 atattcaaaatgtgtatcac 72 |||||||||||||||||||| Sbjct: 4193 atattcaaaatgtgtatcac 4174
>emb|CR847806.15| Zebrafish DNA sequence from clone CH211-267J10 in linkage group 8, complete sequence Length = 151455 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 actgattacaaatgctcaaa 309 |||||||||||||||||||| Sbjct: 140600 actgattacaaatgctcaaa 140581
>emb|Z82209.2|HS428A13 Human DNA sequence from clone RP3-428A13 on chromosome X Contains a intracellular membrane-associated calcium-independent phospholipase A2 (IPLA2) pseudogene, complete sequence Length = 154235 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 acaatgatatattcaaaatg 64 |||||||||||||||||||| Sbjct: 98596 acaatgatatattcaaaatg 98615
>emb|AL607022.11| Human DNA sequence from clone RP11-323N10 on chromosome 10 Contains the 5' end of the gene for alpha-catenin-like protein (MGC26194) (VR22), a aldo-keto reductase family 1, member B10 (aldose reductase) (AKR1B10) pseudogene and a CpG island, complete sequence Length = 121210 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 tcactgtccaatcttctcagctgc 126 |||||||||||||||| ||||||| Sbjct: 49603 tcactgtccaatcttcccagctgc 49626
>emb|AL499604.9| Human DNA sequence from clone RP11-23B15 on chromosome 9 Contains FOXE1 gene for forkhead box E1 (thyroid transcription factor 2), HEMGN gene for hemogen, 2 novel genes and 5 CpG islands, complete sequence Length = 160796 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ctactcatttcacaaagata 404 |||||||||||||||||||| Sbjct: 49047 ctactcatttcacaaagata 49066
>emb|AL732570.12| Mouse DNA sequence from clone RP23-464J2 on chromosome 11 Contains the gene for a novel protein (C630032K07Rik), a novel gene, the 3' end of the gene for a novel protein (1700019F09Rik) and a CpG island, complete sequence Length = 102563 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 tgacaagttttacacatcccaacc 234 ||||||||||| |||||||||||| Sbjct: 41109 tgacaagttttccacatcccaacc 41132
>emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; segment 2/5 Length = 338100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttacaatgatatattcaaaa 62 |||||||||||||||||||| Sbjct: 203638 ttacaatgatatattcaaaa 203619
>emb|AJ851427.1| Gallus gallus mRNA for hypothetical protein, clone 2i13 Length = 5437 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 attttccatggatttttgta 196 |||||||||||||||||||| Sbjct: 5403 attttccatggatttttgta 5384
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gaatatcaacaactacctgc 156 |||||||||||||||||||| Sbjct: 1369793 gaatatcaacaactacctgc 1369812
>gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, region 82C-82D, BAC clone BACR02C19, complete sequence Length = 188359 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cagccttgcgaataattcgt 342 |||||||||||||||||||| Sbjct: 107486 cagccttgcgaataattcgt 107467
>gb|AC096558.1| Homo sapiens BAC clone RP11-186C15 from 2, complete sequence Length = 169453 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tgtttgaatttactagactg 28 |||||||||||||||||||| Sbjct: 164112 tgtttgaatttactagactg 164131
>gb|AC015971.4| Homo sapiens BAC clone RP11-269K22 from 2, complete sequence Length = 163852 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cactgattacaaatgctcaa 308 |||||||||||||||||||| Sbjct: 29592 cactgattacaaatgctcaa 29573
>gb|AC007642.5|AC007642 Homo sapiens chromosome 17, clone hRPK.420_O_5, complete sequence Length = 64011 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 tttccatggatttttgtata 198 |||||||||||||||||||| Sbjct: 38361 tttccatggatttttgtata 38380
>emb|BX088539.6| Mouse DNA sequence from clone RP23-152D15 on chromosome X, complete sequence Length = 151751 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cagggtgggtgtcacttctt 449 |||||||||||||||||||| Sbjct: 123210 cagggtgggtgtcacttctt 123229
>ref|NM_001012541.1| Gallus gallus nucleoporin 50kDa (NUP50), mRNA Length = 5437 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 attttccatggatttttgta 196 |||||||||||||||||||| Sbjct: 5403 attttccatggatttttgta 5384
>gb|AE003694.4| Drosophila melanogaster chromosome 3R, section 32 of 118 of the complete sequence Length = 226075 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 caatgtggcaatgttgcaaa 273 |||||||||||||||||||| Sbjct: 48751 caatgtggcaatgttgcaaa 48770
>emb|AL079343.4|CNS00M8T Human chromosome 14 DNA sequence BAC R-483C6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173480 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 154 tgccaaataccagcctttttggaatttt 181 ||||||||||||||| ||||| |||||| Sbjct: 150483 tgccaaataccagcccttttgtaatttt 150510
>gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 of 118 of the complete sequence Length = 273418 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cagccttgcgaataattcgt 342 |||||||||||||||||||| Sbjct: 194387 cagccttgcgaataattcgt 194368
>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete sequence Length = 220669 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aattttccatggatttttgt 195 |||||||||||||||||||| Sbjct: 12284 aattttccatggatttttgt 12265 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,893,299 Number of Sequences: 3902068 Number of extensions: 4893299 Number of successful extensions: 107287 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107194 Number of HSP's gapped (non-prelim): 93 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)