ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63i21 |
|---|---|
| Clone Library Name | barley_pub |
>128UP_DROME (P32234) GTP-binding protein 128up| Length = 368 Score = 105 bits (263), Expect = 7e-23 Identities = 44/66 (66%), Positives = 58/66 (87%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PDY PV+L ++R ++EDFCN++H+ +AK+FKYALVWGSSVKH+PQ+VG EH L DEDVV Sbjct: 303 PDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVV 362 Query: 395 QIIKKI 378 QI+KK+ Sbjct: 363 QIVKKV 368
>DRG1_MOUSE (P32233) Developmentally-regulated GTP-binding protein 1 (DRG 1)| (Protein NEDD3) (Neural precursor cell expressed developmentally down-regulated protein 3) Length = 367 Score = 103 bits (257), Expect = 4e-22 Identities = 45/65 (69%), Positives = 54/65 (83%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PDY PV+L R TVEDFC +IHK++ K+FKYALVWG SVKH PQ+VGK+H LEDEDV+ Sbjct: 303 PDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVI 362 Query: 395 QIIKK 381 QI+KK Sbjct: 363 QIVKK 367
>DRG1_HUMAN (Q9Y295) Developmentally-regulated GTP-binding protein 1 (DRG 1)| Length = 367 Score = 103 bits (257), Expect = 4e-22 Identities = 45/65 (69%), Positives = 54/65 (83%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PDY PV+L R TVEDFC +IHK++ K+FKYALVWG SVKH PQ+VGK+H LEDEDV+ Sbjct: 303 PDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVI 362 Query: 395 QIIKK 381 QI+KK Sbjct: 363 QIVKK 367
>DRG1_XENLA (P43690) Developmentally-regulated GTP-binding protein 1 (DRG 1)| (xDRG) Length = 367 Score = 101 bits (251), Expect = 2e-21 Identities = 43/65 (66%), Positives = 52/65 (80%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PDY PV+L EDFC +IHK++ K+FKYALVWGSSVKH PQ+VGK+H LEDEDV+ Sbjct: 303 PDYTSPVVLPCSHTAAEDFCTKIHKNLIKEFKYALVWGSSVKHNPQKVGKDHVLEDEDVI 362 Query: 395 QIIKK 381 QI+KK Sbjct: 363 QIVKK 367
>YAD6_YEAST (P39729) Hypothetical 40.7 kDa protein in PYK1-SNC1 intergenic| region Length = 369 Score = 90.5 bits (223), Expect = 3e-18 Identities = 42/65 (64%), Positives = 51/65 (78%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PD+ DPV+L S R +V+DFCNQIHK + F+ ALV+GSSVKH+PQ VG H LEDEDVV Sbjct: 305 PDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVV 364 Query: 395 QIIKK 381 I+KK Sbjct: 365 TILKK 369
>YFY7_SCHPO (Q9UT21) Hypothetical protein C9.07c in chromosome I| Length = 366 Score = 82.0 bits (201), Expect = 1e-15 Identities = 38/65 (58%), Positives = 44/65 (67%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PDY +PVIL + TVEDFCN IH + QFK+A VWG SV + RVG H L DEDVV Sbjct: 302 PDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHVLLDEDVV 361 Query: 395 QIIKK 381 I+KK Sbjct: 362 TIVKK 366
>DRG2_MOUSE (Q9QXB9) Developmentally-regulated GTP-binding protein 2 (DRG 2)| Length = 364 Score = 81.6 bits (200), Expect = 1e-15 Identities = 37/65 (56%), Positives = 49/65 (75%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PD+ D +IL K +VE C++IH+ +A QFKYALVWG+S K+ PQRVG H +E EDV+ Sbjct: 301 PDFTDAIILR-KGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVI 359 Query: 395 QIIKK 381 QI+KK Sbjct: 360 QIVKK 364
>DRG2_HUMAN (P55039) Developmentally-regulated GTP-binding protein 2 (DRG 2)| Length = 364 Score = 81.6 bits (200), Expect = 1e-15 Identities = 37/65 (56%), Positives = 49/65 (75%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PD+ D +IL K +VE C++IH+ +A QFKYALVWG+S K+ PQRVG H +E EDV+ Sbjct: 301 PDFTDAIILR-KGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVI 359 Query: 395 QIIKK 381 QI+KK Sbjct: 360 QIVKK 364
>YG3Y_YEAST (P53295) Hypothetical 41.0 kDa protein in YIP1-CBP4 intergenic| region Length = 368 Score = 74.7 bits (182), Expect = 2e-13 Identities = 31/65 (47%), Positives = 45/65 (69%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 P ++DP+++ + T+ D C+ IH+D +FKYALVWGSS KH PQ+ G H ++DEDVV Sbjct: 305 PVFDDPLVVRNN-STIGDLCHGIHRDFKDKFKYALVWGSSAKHSPQKCGLNHRIDDEDVV 363 Query: 395 QIIKK 381 + K Sbjct: 364 SLFAK 368
>Y1326_METJA (Q58722) Hypothetical GTP-binding protein MJ1326| Length = 391 Score = 73.9 bits (180), Expect = 3e-13 Identities = 31/65 (47%), Positives = 47/65 (72%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVV 396 PD+++P+I+ + TV+D C ++HKD + F+YA VWG S KH QRVG +H+LED D++ Sbjct: 327 PDFDEPLIMR-RGATVKDVCEKLHKDFVRNFRYAQVWGKSAKHPGQRVGLDHKLEDGDIL 385 Query: 395 QIIKK 381 I+ K Sbjct: 386 TIVIK 390
>YKK3_CAEEL (P34280) Hypothetical GTP-binding protein C02F5.3 in chromosome III| Length = 366 Score = 69.3 bits (168), Expect = 7e-12 Identities = 31/62 (50%), Positives = 44/62 (70%) Frame = -2 Query: 566 EDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVVQII 387 ED +IL T+E C+ +H+ +A Q +YA+VWG+S K PQRVG H+L+ EDV+QI+ Sbjct: 306 EDGIILRGGA-TIEHCCHALHRSIAAQLRYAIVWGTSTKFSPQRVGLHHKLDHEDVIQIV 364 Query: 386 KK 381 KK Sbjct: 365 KK 366
>GTP1_SCHPO (P32235) GTP-binding protein 1| Length = 364 Score = 69.3 bits (168), Expect = 7e-12 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Frame = -2 Query: 575 PDYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQ-RVGKEHELEDEDV 399 PD+ + +I+ K T+E CN+IH+ +A+Q KYALVWG+S KH PQ VG H +E+ DV Sbjct: 300 PDFSEALIVR-KGSTIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVVVGLNHRVEEGDV 358 Query: 398 VQIIKK 381 V I+ K Sbjct: 359 VTIVTK 364
>Y1111_HALSA (P17103) Hypothetical GTP-binding protein Vng1111g| Length = 370 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/64 (35%), Positives = 45/64 (70%) Frame = -2 Query: 572 DYEDPVILSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVVQ 393 D E+P+I+ + +TV+D ++ + ++F++A V G S +H Q+VG++H LEDEDV++ Sbjct: 307 DREEPLIIR-RGETVDDAVQKLGGTLDERFRFARVTGPSAQHDDQQVGRDHVLEDEDVLR 365 Query: 392 IIKK 381 ++ + Sbjct: 366 VVAR 369
>Y1332_METJA (Q58728) Hypothetical GTP-binding protein MJ1332| Length = 393 Score = 33.1 bits (74), Expect = 0.58 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = -2 Query: 551 LSSKRKTVEDFCNQIHKDMAKQFKYALVWGSSVKHKPQRVGKEHELEDEDVVQII 387 L K T D ++H ++ ++F YA+ K RVG ++EL+ D+++I+ Sbjct: 340 LVKKGSTARDLAYKVHTELGEKFIYAID-----AKKKIRVGADYELKHNDIIKIV 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,868,151 Number of Sequences: 219361 Number of extensions: 1834912 Number of successful extensions: 4517 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4401 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4516 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
