Clone Name | rbah63i19 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106414.1| Zea mays PCO109372 mRNA sequence Length = 1863 Score = 278 bits (140), Expect = 1e-71 Identities = 200/220 (90%) Strand = Plus / Minus Query: 231 aggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggga 290 |||||||| |||||||| || ||||| ||||||| || ||||| ||||||||| ||||| Sbjct: 1588 aggaagtccctggggtccgtaacataccccgtcagggctgaggcagccgcagtgtaggga 1529 Query: 291 gaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgtc 350 || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1528 gacgccaggtagatttgcccttccttgtggcccatcctgcccggaaagttcctgttcgtg 1469 Query: 351 gttgatacacagaccgtaggttcattcatccgtgcatatgtatcacgaggaccacccaaa 410 || || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1468 gtggacacgcagacagtaggttcattcatccgtgcatatgtatcacgagggccacccaaa 1409 Query: 411 caagcaccacaattaggactagctggtgtatcacaaccag 450 |||||||||||||||||||| |||||||| |||||||||| Sbjct: 1408 caagcaccacaattaggacttgctggtgtgtcacaaccag 1369
>ref|XM_463952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1802 Score = 256 bits (129), Expect = 5e-65 Identities = 198/221 (89%) Strand = Plus / Minus Query: 230 caggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggg 289 ||||||||| |||||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct: 1592 caggaagtccctggggtcagtgacgtatccggtgagggctgaagccgccgcggtgaacgg 1533 Query: 290 agaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgt 349 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 1532 cgaagccaggtagatctgcccttccttgtgccccatcctgccggggaaattcctgttcgt 1473 Query: 350 cgttgatacacagaccgtaggttcattcatccgtgcatatgtatcacgaggaccacccaa 409 ||| || ||||| ||| ||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1472 cgtcgacacacacaccataggttcattcatgcgagcatatgtatcacgaggaccacccaa 1413 Query: 410 acaagcaccacaattaggactagctggtgtatcacaaccag 450 ||||||||||||| |||| |||||||||||||||||||||| Sbjct: 1412 acaagcaccacaactagggctagctggtgtatcacaaccag 1372
>dbj|AK101889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M16, full insert sequence Length = 1802 Score = 256 bits (129), Expect = 5e-65 Identities = 198/221 (89%) Strand = Plus / Minus Query: 230 caggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggg 289 ||||||||| |||||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct: 1592 caggaagtccctggggtcagtgacgtatccggtgagggctgaagccgccgcggtgaacgg 1533 Query: 290 agaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgt 349 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 1532 cgaagccaggtagatctgcccttccttgtgccccatcctgccggggaaattcctgttcgt 1473 Query: 350 cgttgatacacagaccgtaggttcattcatccgtgcatatgtatcacgaggaccacccaa 409 ||| || ||||| ||| ||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1472 cgtcgacacacacaccataggttcattcatgcgagcatatgtatcacgaggaccacccaa 1413 Query: 410 acaagcaccacaattaggactagctggtgtatcacaaccag 450 ||||||||||||| |||| |||||||||||||||||||||| Sbjct: 1412 acaagcaccacaactagggctagctggtgtatcacaaccag 1372
>gb|BT024115.1| Zea mays clone EL01N0513A07 mRNA sequence Length = 1781 Score = 254 bits (128), Expect = 2e-64 Identities = 197/220 (89%) Strand = Plus / Minus Query: 231 aggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggga 290 |||||||| |||||||| || ||||| ||||||| || ||||| ||||||||| ||||| Sbjct: 1639 aggaagtccctggggtccgtaacataccccgtcagggctgaggcagccgcagtgtaggga 1580 Query: 291 gaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgtc 350 || |||||||||| | |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1579 gacgccaggtagagggggccttccttgtggcccatcctgcccggaaagttcctgttcgtg 1520 Query: 351 gttgatacacagaccgtaggttcattcatccgtgcatatgtatcacgaggaccacccaaa 410 || || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1519 gtggacacgcagacagtaggttcattcatccgtgcatatgtatcacgagggccacccaaa 1460 Query: 411 caagcaccacaattaggactagctggtgtatcacaaccag 450 |||||||||||||||||||| |||||||| |||||||||| Sbjct: 1459 caagcaccacaattaggacttgctggtgtgtcacaaccag 1420
>gb|AY108671.1| Zea mays PCO109373 mRNA sequence Length = 1642 Score = 246 bits (124), Expect = 5e-62 Identities = 196/220 (89%) Strand = Plus / Minus Query: 231 aggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggga 290 |||||||| |||||||| ||||| || ||||||| |||||||| || || ||| |||| Sbjct: 1280 aggaagtccctggggtccgtgacgtaccccgtcagggccgaggctgcagcggtgtagggg 1221 Query: 291 gaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgtc 350 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1220 gacgccaggtagatctgcccttccttgtgccccatcctgcccgggaagttcctgttcgtg 1161 Query: 351 gttgatacacagaccgtaggttcattcatccgtgcatatgtatcacgaggaccacccaaa 410 || || || ||||||||||||||||||||||||||||| ||||| ||||| ||||||| | Sbjct: 1160 gtggacacgcagaccgtaggttcattcatccgtgcatacgtatcgcgagggccacccaga 1101 Query: 411 caagcaccacaattaggactagctggtgtatcacaaccag 450 ||||| || ||||||||||| ||||||||||||||||||| Sbjct: 1100 caagcgccgcaattaggacttgctggtgtatcacaaccag 1061
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 135 bits (68), Expect = 1e-28 Identities = 80/84 (95%) Strand = Plus / Plus Query: 367 taggttcattcatccgtgcatatgtatcacgaggaccacccaaacaagcaccacaattag 426 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1305679 taggttcattcatgcgagcatatgtatcacgaggaccacccaaacaagcaccacaactag 1305738 Query: 427 gactagctggtgtatcacaaccag 450 | |||||||||||||||||||||| Sbjct: 1305739 ggctagctggtgtatcacaaccag 1305762 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 230 caggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggg 289 ||||||||| |||||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct: 1305115 caggaagtccctggggtcagtgacgtatccggtgagggctgaagccgccgcggtgaacgg 1305174 Query: 290 agaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgt 349 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 1305175 cgaagccaggtagatctgcccttccttgtgccccatcctgccggggaaattcctgttcgt 1305234 Query: 350 cgttgatacaca 361 ||| || ||||| Sbjct: 1305235 cgtcgacacaca 1305246
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 135 bits (68), Expect = 1e-28 Identities = 80/84 (95%) Strand = Plus / Plus Query: 367 taggttcattcatccgtgcatatgtatcacgaggaccacccaaacaagcaccacaattag 426 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 136770 taggttcattcatgcgagcatatgtatcacgaggaccacccaaacaagcaccacaactag 136829 Query: 427 gactagctggtgtatcacaaccag 450 | |||||||||||||||||||||| Sbjct: 136830 ggctagctggtgtatcacaaccag 136853 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 230 caggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggg 289 ||||||||| |||||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct: 136206 caggaagtccctggggtcagtgacgtatccggtgagggctgaagccgccgcggtgaacgg 136265 Query: 290 agaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgt 349 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 136266 cgaagccaggtagatctgcccttccttgtgccccatcctgccggggaaattcctgttcgt 136325 Query: 350 cgttgatacaca 361 ||| || ||||| Sbjct: 136326 cgtcgacacaca 136337
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 135 bits (68), Expect = 1e-28 Identities = 80/84 (95%) Strand = Plus / Plus Query: 367 taggttcattcatccgtgcatatgtatcacgaggaccacccaaacaagcaccacaattag 426 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 79708 taggttcattcatgcgagcatatgtatcacgaggaccacccaaacaagcaccacaactag 79767 Query: 427 gactagctggtgtatcacaaccag 450 | |||||||||||||||||||||| Sbjct: 79768 ggctagctggtgtatcacaaccag 79791 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 230 caggaagtctctggggtctgtgacatatcccgtcaacgccgaggccgccgcagtgaaggg 289 ||||||||| |||||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct: 79144 caggaagtccctggggtcagtgacgtatccggtgagggctgaagccgccgcggtgaacgg 79203 Query: 290 agaagccaggtagatctgcccttccttgtggcccatcctgcccgggaagttcctgttcgt 349 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 79204 cgaagccaggtagatctgcccttccttgtgccccatcctgccggggaaattcctgttcgt 79263 Query: 350 cgttgatacaca 361 ||| || ||||| Sbjct: 79264 cgtcgacacaca 79275
>gb|AC136679.19| Medicago truncatula clone mth2-22c4, complete sequence Length = 101649 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 368 aggttcattcatccgtgcatatgtatcacgaggaccacccaaacaagcaccacaattagg 427 |||||||||||| || ||||| ||||| || ||||||||||||||||||||| |||| Sbjct: 84664 aggttcattcatgcgggcataagtatctttcgggccacccaaacaagcaccacaactagg 84605 Query: 428 actagctggtgtatcacaaccag 450 |||||| ||||| |||||||||| Sbjct: 84604 actagcaggtgtgtcacaaccag 84582
>ref|NM_117417.2| Arabidopsis thaliana hydro-lyase/ lyase AT4G13430 mRNA, complete cds Length = 1871 Score = 63.9 bits (32), Expect = 4e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 267 gccgaggccgccgcagtgaagggagaagccaggtagatctgcccttccttgtggcccatc 326 |||||||| || |||||| | ||||| || | ||| || |||||||| ||||| |||||| Sbjct: 1567 gccgaggctgcagcagtgtaaggagacgctaagtaaatttgcccttctttgtgtcccatc 1508 Query: 327 ctgcccgggaagttcctgttcgtcgttgatacacagaccgtaggttcattca 378 | || |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 1507 cgaccggggaagttcctgtttgtcgttgagacacacacttgaggttcattca 1456
>gb|AY117151.1| Arabidopsis thaliana unknown protein (At4g13430) mRNA, complete cds Length = 1561 Score = 63.9 bits (32), Expect = 4e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 267 gccgaggccgccgcagtgaagggagaagccaggtagatctgcccttccttgtggcccatc 326 |||||||| || |||||| | ||||| || | ||| || |||||||| ||||| |||||| Sbjct: 1487 gccgaggctgcagcagtgtaaggagacgctaagtaaatttgcccttctttgtgtcccatc 1428 Query: 327 ctgcccgggaagttcctgttcgtcgttgatacacagaccgtaggttcattca 378 | || |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 1427 cgaccggggaagttcctgtttgtcgttgagacacacacttgaggttcattca 1376
>gb|AY045842.1| Arabidopsis thaliana unknown protein (At4g13430) mRNA, complete cds Length = 1808 Score = 63.9 bits (32), Expect = 4e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 267 gccgaggccgccgcagtgaagggagaagccaggtagatctgcccttccttgtggcccatc 326 |||||||| || |||||| | ||||| || | ||| || |||||||| ||||| |||||| Sbjct: 1556 gccgaggctgcagcagtgtaaggagacgctaagtaaatttgcccttctttgtgtcccatc 1497 Query: 327 ctgcccgggaagttcctgttcgtcgttgatacacagaccgtaggttcattca 378 | || |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 1496 cgaccggggaagttcctgtttgtcgttgagacacacacttgaggttcattca 1445
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36 Length = 199634 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 267 gccgaggccgccgcagtgaagggagaagccaggtagatctgcccttccttgtggcccatc 326 |||||||| || |||||| | ||||| || | ||| || |||||||| ||||| |||||| Sbjct: 90978 gccgaggctgcagcagtgtaaggagacgctaagtaaatttgcccttctttgtgtcccatc 91037 Query: 327 ctgcccgggaagttcctgttcgtcgttgatacaca 361 | || |||||||||||||| |||||||| ||||| Sbjct: 91038 cgaccggggaagttcctgtttgtcgttgagacaca 91072
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence (ESSA project) Length = 95432 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 267 gccgaggccgccgcagtgaagggagaagccaggtagatctgcccttccttgtggcccatc 326 |||||||| || |||||| | ||||| || | ||| || |||||||| ||||| |||||| Sbjct: 74999 gccgaggctgcagcagtgtaaggagacgctaagtaaatttgcccttctttgtgtcccatc 75058 Query: 327 ctgcccgggaagttcctgttcgtcgttgatacaca 361 | || |||||||||||||| |||||||| ||||| Sbjct: 75059 cgaccggggaagttcctgtttgtcgttgagacaca 75093
>gb|AC147572.4| Pan troglodytes BAC clone CH251-412D24 from Y, complete sequence Length = 166356 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 94563 gacacacacacagaaatctaaa 94584
>gb|AC147608.1| Pan troglodytes BAC clone CH251-506P22 from Y, complete sequence Length = 195158 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 57910 gacacacacacagaaatctaaa 57889
>gb|AC146198.2| Pan troglodytes BAC clone CH251-475M5 from Y, complete sequence Length = 220557 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 215118 gacacacacacagaaatctaaa 215097
>gb|AC147361.1| Pan troglodytes BAC clone CH251-528H6 from Y, complete sequence Length = 169760 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 5429 gacacacacacagaaatctaaa 5450
>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence Length = 229006 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 30570 gacacacacacagaaatctaaa 30591
>gb|AC146515.2| Pan troglodytes BAC clone CH251-113M4 from Y, complete sequence Length = 183460 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 109619 gacacacacacagaaatctaaa 109598
>gb|AC142348.1| Pan troglodytes BAC clone RP43-5I10 from Y, complete sequence Length = 183293 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 137584 gacacacacacagaaatctaaa 137605
>dbj|BS000677.1| Pan troglodytes chromosome Y clone: PTB-391J06, complete sequence Length = 171013 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 99406 gacacacacacagaaatctaaa 99385
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 11527399 gacacacacacagaaatctaaa 11527378 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 10658047 gacacacacacagaaatctaaa 10658068 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 3628940 gacacacacacagaaatctaaa 3628919 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 2689281 gacacacacacagaaatctaaa 2689302
>gb|AC016637.7| Homo sapiens chromosome 5 clone RP11-34J15, complete sequence Length = 173317 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 129 acacacacacagaaatctaaac 150 |||||||||||||||||||||| Sbjct: 11869 acacacacacagaaatctaaac 11848
>gb|AC151800.2| Pan troglodytes BAC clone CH251-261E10 from chromosome y, complete sequence Length = 149719 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 7817 gacacacacacagaaatctaaa 7796
>gb|AC148933.3| Pan troglodytes BAC clone CH251-571K7 from chromosome y, complete sequence Length = 171231 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 138190 gacacacacacagaaatctaaa 138211
>gb|AC007359.3|AC007359 Homo sapiens BAC clone RP11-66M18 from Y, complete sequence Length = 100627 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 3616 gacacacacacagaaatctaaa 3595
>gb|AC016752.2|AC016752 Homo sapiens BAC clone RP11-506M9 from Y, complete sequence Length = 166436 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 42703 gacacacacacagaaatctaaa 42682
>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence Length = 205237 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 100702 gacacacacacagaaatctaaa 100723
>gb|AC007965.3|AC007965 Homo sapiens BAC clone RP11-245K4 from Y, complete sequence Length = 182083 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 137296 gacacacacacagaaatctaaa 137317
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 4214191 gacacacacacagaaatctaaa 4214212 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 1834115 gacacacacacagaaatctaaa 1834094 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 739797 gacacacacacagaaatctaaa 739818 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatctaaa 149 |||||||||||||||||||||| Sbjct: 224826 gacacacacacagaaatctaaa 224805
>gb|AC087101.2| Rattus norvegicus strain Brown Norway clone RP31-230B14, complete sequence Length = 27615 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 cacacacagaaatctaaacta 152 ||||||||||||||||||||| Sbjct: 3487 cacacacagaaatctaaacta 3507
>gb|AC087042.2| Rattus norvegicus strain Brown Norway clone RP31-314L24, complete sequence Length = 110542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 cacacacagaaatctaaacta 152 ||||||||||||||||||||| Sbjct: 109979 cacacacagaaatctaaacta 109999
>emb|AL354760.11| Human DNA sequence from clone RP4-671G15 on chromosome 1p13.1-13.3 Contains the 3' end of the gene for a novel protein, the 5' end of the WNT2B gene for wingless-type MMTV integration site family, member 2B and a CpG island, complete sequence Length = 111977 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 gaaaaagcatacaacaaaacc 80 ||||||||||||||||||||| Sbjct: 92365 gaaaaagcatacaacaaaacc 92385
>gb|AC096070.7| Rattus norvegicus 4 BAC CH230-20J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 231332 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 cacacacagaaatctaaacta 152 ||||||||||||||||||||| Sbjct: 77853 cacacacagaaatctaaacta 77833
>gb|DQ397595.1| Cenarchaeum symbiosum clone C03F09, complete sequence Length = 39172 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 320 gcccatcctgcccgggaagttcctgttcgtcgt 352 |||||||||||| || ||||||||||| ||||| Sbjct: 18822 gcccatcctgccgggaaagttcctgttggtcgt 18854
>gb|DQ397590.1| Cenarchaeum symbiosum clone C01G02, complete sequence Length = 39399 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 320 gcccatcctgcccgggaagttcctgttcgtcgt 352 |||||||||||| || ||||||||||| ||||| Sbjct: 7856 gcccatcctgccgggaaagttcctgttggtcgt 7824
>gb|DQ397541.1| Cenarchaeum symbiosum clone C01B03, complete sequence Length = 43871 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 320 gcccatcctgcccgggaagttcctgttcgtcgt 352 |||||||||||| || ||||||||||| ||||| Sbjct: 29651 gcccatcctgccgggaaagttcctgttggtcgt 29619
>emb|CR610673.1| full-length cDNA clone CS0DF023YJ10 of Fetal brain of Homo sapiens (human) Length = 1261 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 gaaaaagcatacaacaaaacc 80 ||||||||||||||||||||| Sbjct: 504 gaaaaagcatacaacaaaacc 524
>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence Length = 115904 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 402 ccacccaaacaagcaccacaattaggactagctggtgtatcacaaccag 450 ||||||| ||| ||| ||||| ||||||| || |||| ||||||||||| Sbjct: 54121 ccacccatacatgcagcacaactaggacttgcaggtggatcacaaccag 54073
>gb|AC097261.6| Homo sapiens X BAC RP11-109P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97628 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 acacacacacagaaatctaaa 149 ||||||||||||||||||||| Sbjct: 87283 acacacacacagaaatctaaa 87263
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 cacacacagaaatctaaacta 152 ||||||||||||||||||||| Sbjct: 570553 cacacacagaaatctaaacta 570573
>emb|BX294378.5| Mouse DNA sequence from clone RP23-457B12 on chromosome 2, complete sequence Length = 10516 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaaa 149 ||||||||||||||||||||| Sbjct: 8603 acacacacacagaaatctaaa 8623
>emb|AL928926.9| Mouse DNA sequence from clone RP23-443G7 on chromosome 2, complete sequence Length = 211456 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaaa 149 ||||||||||||||||||||| Sbjct: 87 acacacacacagaaatctaaa 107
>gb|AC123647.9| Mus musculus chromosome 3, clone RP23-105J10, complete sequence Length = 202415 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 acacagaaatctaaactaca 154 |||||||||||||||||||| Sbjct: 199134 acacagaaatctaaactaca 199115
>gb|AC010577.5| Drosophila melanogaster clone BACR22J20, complete sequence Length = 152661 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ggaagtctctggggtctgtg 251 |||||||||||||||||||| Sbjct: 114003 ggaagtctctggggtctgtg 114022
>gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complete sequence Length = 156843 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggaagtctctggggtctgtg 251 |||||||||||||||||||| Sbjct: 143603 ggaagtctctggggtctgtg 143584
>ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, centromeric (IR2@) on chromosome Y Length = 389013 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatcta 147 |||||||||||||||||||| Sbjct: 313491 gacacacacacagaaatcta 313510
>emb|BX927290.22| Zebrafish DNA sequence from clone CH211-212K5 in linkage group 14, complete sequence Length = 222032 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aacaatgttctttgtgccag 26 |||||||||||||||||||| Sbjct: 105424 aacaatgttctttgtgccag 105443
>gb|AC125039.4| Mus musculus BAC clone RP23-335C3 from chromosome 6, complete sequence Length = 222535 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaaacta 152 ||||||||||| |||||||||||| Sbjct: 2167 acacacacacacaaatctaaacta 2190
>gb|AC165179.2| Zea mays clone ZMMBBb-37E5, complete sequence Length = 134893 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 taccaatgaaaaagcataca 72 |||||||||||||||||||| Sbjct: 104487 taccaatgaaaaagcataca 104506
>emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 137783 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gaaaaagcatacaacaaaac 79 |||||||||||||||||||| Sbjct: 51422 gaaaaagcatacaacaaaac 51441
>gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence Length = 167543 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgaggccgccgcagtga 285 |||||||||||||||||||| Sbjct: 34121 cgccgaggccgccgcagtga 34140
>emb|BX324172.22| Zebrafish DNA sequence from clone DKEYP-86D6 in linkage group 13, complete sequence Length = 184555 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aacaatgttctttgtgccag 26 |||||||||||||||||||| Sbjct: 18237 aacaatgttctttgtgccag 18256
>gb|BC053990.1| Homo sapiens pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8, mRNA (cDNA clone MGC:59711 IMAGE:5922853), complete cds Length = 1928 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgaggccgccgcagtga 285 |||||||||||||||||||| Sbjct: 143 cgccgaggccgccgcagtga 162
>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes and two CpG islands, complete sequence Length = 187709 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 taccaatgaaaaagcataca 72 |||||||||||||||||||| Sbjct: 175672 taccaatgaaaaagcataca 175691
>emb|CR598838.1| full-length cDNA clone CS0DI010YD20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2101 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgaggccgccgcagtga 285 |||||||||||||||||||| Sbjct: 206 cgccgaggccgccgcagtga 225
>dbj|AK023180.1| Homo sapiens cDNA FLJ13118 fis, clone NT2RP3002663, highly similar to Homo sapiens putative glycolipid transfer protein mRNA Length = 2836 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgaggccgccgcagtga 285 |||||||||||||||||||| Sbjct: 127 cgccgaggccgccgcagtga 146
>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds Length = 70631 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 acgccgaggccgccgcagtg 284 |||||||||||||||||||| Sbjct: 35119 acgccgaggccgccgcagtg 35100
>ref|NM_079895.2| Drosophila melanogaster Retinoid- and fatty-acid binding protein CG11064-RA (RfaBp), mRNA Length = 10281 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggaagtctctggggtctgtg 251 |||||||||||||||||||| Sbjct: 8154 ggaagtctctggggtctgtg 8135
>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence Length = 159629 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaa 148 |||||||||||||||||||| Sbjct: 91114 acacacacacagaaatctaa 91133
>gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, complete sequence Length = 195568 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaa 148 |||||||||||||||||||| Sbjct: 34832 acacacacacagaaatctaa 34851
>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15, complete sequence Length = 205794 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaa 148 |||||||||||||||||||| Sbjct: 23835 acacacacacagaaatctaa 23854
>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence Length = 161873 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gttcctgttcgtcgttgata 357 |||||||||||||||||||| Sbjct: 148653 gttcctgttcgtcgttgata 148634
>gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188768 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaaacta 152 ||||||||||| |||||||||||| Sbjct: 119070 acacacacacacaaatctaaacta 119093
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gttcctgttcgtcgttgata 357 |||||||||||||||||||| Sbjct: 6281250 gttcctgttcgtcgttgata 6281269
>gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y, complete sequence Length = 160601 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gacacacacacagaaatcta 147 |||||||||||||||||||| Sbjct: 45210 gacacacacacagaaatcta 45229
>gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y, complete sequence Length = 148058 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 gacacacacacagaaatcta 147 |||||||||||||||||||| Sbjct: 112316 gacacacacacagaaatcta 112297
>gb|AC007285.3|AC007285 Homo sapiens BAC clone RP11-576P10 from 7p11.2-p21, complete sequence Length = 140619 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgaggccgccgcagtga 285 |||||||||||||||||||| Sbjct: 66920 cgccgaggccgccgcagtga 66939
>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0663H05 Length = 161938 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gttcctgttcgtcgttgata 357 |||||||||||||||||||| Sbjct: 13529 gttcctgttcgtcgttgata 13548
>dbj|AP005562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1190_B07 Length = 140200 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gttcctgttcgtcgttgata 357 |||||||||||||||||||| Sbjct: 126533 gttcctgttcgtcgttgata 126552
>emb|AL929152.24| Zebrafish DNA sequence from clone CH211-59L24, complete sequence Length = 172954 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aacaatgttctttgtgccag 26 |||||||||||||||||||| Sbjct: 82842 aacaatgttctttgtgccag 82823
>emb|CR388135.16| Zebrafish DNA sequence from clone CH211-152C12 in linkage group 19, complete sequence Length = 159848 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 acacacacacagaaatctaa 148 |||||||||||||||||||| Sbjct: 150950 acacacacacagaaatctaa 150969
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete sequence Length = 356494 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggaagtctctggggtctgtg 251 |||||||||||||||||||| Sbjct: 169068 ggaagtctctggggtctgtg 169049
>emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 in linkage group 6, complete sequence Length = 169904 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 aagtctctggggtctgtgac 253 |||||||||||||||||||| Sbjct: 69941 aagtctctggggtctgtgac 69960
>gb|U62892.1|DMU62892 Drosophila melanogaster retinoid- and fatty acid-binding glycoprotein mRNA, complete cds Length = 10281 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggaagtctctggggtctgtg 251 |||||||||||||||||||| Sbjct: 8154 ggaagtctctggggtctgtg 8135
>gb|AC115888.10| Mus musculus chromosome 3, clone RP24-399D16, complete sequence Length = 142265 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 acacagaaatctaaactaca 154 |||||||||||||||||||| Sbjct: 11272 acacagaaatctaaactaca 11253
>emb|AL805901.6| Mouse DNA sequence from clone RP23-24K4 on chromosome X, complete sequence Length = 243012 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 acacacacacagaaatctaa 148 |||||||||||||||||||| Sbjct: 134571 acacacacacagaaatctaa 134552 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,716,853 Number of Sequences: 3902068 Number of extensions: 13716853 Number of successful extensions: 96452 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96109 Number of HSP's gapped (non-prelim): 342 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)