Clone Name | rbah63i17 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA sequence Length = 1878 Score = 642 bits (324), Expect = 0.0 Identities = 351/360 (97%) Strand = Plus / Minus Query: 87 ttgctgttgaaacacagcagtgcttagttcttgtacttcatggtctctttctcgaatccg 146 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 1624 ttgctgttgaaacacagcagttcttagttcttgtacttcatggtctccttctcgaatcca 1565 Query: 147 attgttgggaattgttttgcatattcctccacatcgtggcgaagctttgcaatttcagct 206 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgttgggaattgtttcgcatattcctccacatcgtggcgaagctttgcaatttcagct 1505 Query: 207 tggatgttgctgtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgct 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 tggatgttgctgtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgct 1445 Query: 267 gcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaaccttggcg 326 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct: 1444 gcagctttaaccttcaaggccaagttcactgccgaatcgaagaagtcagcaaccttggcg 1385 Query: 327 aagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccg 386 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1384 aagtcctcctcaacaaatcctcttgatgtaagtgcgggggttcccatcctgatgcctccg 1325 Query: 387 ggtaccatagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatgcacattt 446 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1324 ggtaccatagctgaaacatcaccaggaaccgtgttcttgtttgctgcaatatgcacattt 1265
>ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2052 Score = 416 bits (210), Expect = e-113 Identities = 303/334 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1615 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1556 Query: 229 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 288 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1555 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1496 Query: 289 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 348 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1495 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1436 Query: 349 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 408 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1435 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1376 Query: 409 caggaactgtgttcttgtttgctgcaatatgcac 442 |||||||||||||||||||||||||||| ||||| Sbjct: 1375 caggaactgtgttcttgtttgctgcaatgtgcac 1342
>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full insert sequence Length = 1402 Score = 416 bits (210), Expect = e-113 Identities = 303/334 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1068 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1009 Query: 229 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 288 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1008 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 949 Query: 289 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 348 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 948 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 889 Query: 349 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 408 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 888 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 829 Query: 409 caggaactgtgttcttgtttgctgcaatatgcac 442 |||||||||||||||||||||||||||| ||||| Sbjct: 828 caggaactgtgttcttgtttgctgcaatgtgcac 795
>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full insert sequence Length = 1923 Score = 416 bits (210), Expect = e-113 Identities = 303/334 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1538 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1479 Query: 229 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 288 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1478 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1419 Query: 289 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 348 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1418 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1359 Query: 349 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 408 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1358 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1299 Query: 409 caggaactgtgttcttgtttgctgcaatatgcac 442 |||||||||||||||||||||||||||| ||||| Sbjct: 1298 caggaactgtgttcttgtttgctgcaatgtgcac 1265
>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full insert sequence Length = 1976 Score = 416 bits (210), Expect = e-113 Identities = 303/334 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1539 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1480 Query: 229 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 288 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1479 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1420 Query: 289 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 348 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1419 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1360 Query: 349 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 408 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1359 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1300 Query: 409 caggaactgtgttcttgtttgctgcaatatgcac 442 |||||||||||||||||||||||||||| ||||| Sbjct: 1299 caggaactgtgttcttgtttgctgcaatgtgcac 1266
>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full insert sequence Length = 1844 Score = 416 bits (210), Expect = e-113 Identities = 303/334 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1531 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1472 Query: 229 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 288 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1471 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1412 Query: 289 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 348 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1411 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1352 Query: 349 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 408 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1351 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1292 Query: 409 caggaactgtgttcttgtttgctgcaatatgcac 442 |||||||||||||||||||||||||||| ||||| Sbjct: 1291 caggaactgtgttcttgtttgctgcaatgtgcac 1258
>gb|AY105738.1| Zea mays PCO070960 mRNA sequence Length = 1476 Score = 335 bits (169), Expect = 7e-89 Identities = 296/337 (87%), Gaps = 6/337 (1%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcata 169 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172 Query: 170 ttcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgcaa 229 |||||| ||||| ||||||||||||||||| ||| |||||||| || || |||||||| Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttggatg---ctatcagattgcaa 1115 Query: 230 agtggcaacaaagtccttcagtttggt---acctgctgctgcagctttaaccttcaaagc 286 ||||||||||||||||||||| || || ||||| | |||||| |||| |||||| || Sbjct: 1114 agtggcaacaaagtccttcagctttgttccacctgtcgttgcagccttaatcttcaaggc 1055 Query: 287 caagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcc 346 || |||||||| | ||||||||| || ||||| || ||||| || || ||||||||||| Sbjct: 1054 cagattcactgctgcatcgaagaagtcagcaactttagcgaaatcttcttcaacaaatcc 995 Query: 347 tcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatc 406 ||| || ||||| || ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 994 tctcgacgtaagggctggggttcccatcctgatgcctcctggcaccatagctgaaacatc 935 Query: 407 accaggaactgtgttcttgtttgctgcaatatgcaca 443 ||||||||||||||||||||||||||||||||||||| Sbjct: 934 accaggaactgtgttcttgtttgctgcaatatgcaca 898
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 176 bits (89), Expect = 4e-41 Identities = 131/145 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 30011260 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30011201 Query: 229 aagtggcaacaaagtccttcagttt 253 ||||||||||||||||||||||||| Sbjct: 30011200 aagtggcaacaaagtccttcagttt 30011176 Score = 131 bits (66), Expect = 2e-27 Identities = 72/74 (97%) Strand = Plus / Minus Query: 369 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgttt 428 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 30010834 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 30010775 Query: 429 gctgcaatatgcac 442 |||||||| ||||| Sbjct: 30010774 gctgcaatgtgcac 30010761 Score = 129 bits (65), Expect = 8e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 262 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 321 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 30011026 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30010967 Query: 322 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 370 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 30010966 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30010918
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 176 bits (89), Expect = 4e-41 Identities = 131/145 (90%) Strand = Plus / Plus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 96491 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 96550 Query: 229 aagtggcaacaaagtccttcagttt 253 ||||||||||||||||||||||||| Sbjct: 96551 aagtggcaacaaagtccttcagttt 96575 Score = 131 bits (66), Expect = 2e-27 Identities = 72/74 (97%) Strand = Plus / Plus Query: 369 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgttt 428 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 96917 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 96976 Query: 429 gctgcaatatgcac 442 |||||||| ||||| Sbjct: 96977 gctgcaatgtgcac 96990 Score = 129 bits (65), Expect = 8e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 262 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 321 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 96725 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 96784 Query: 322 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 370 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 96785 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 96833
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 176 bits (89), Expect = 4e-41 Identities = 131/145 (90%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 228 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 30102682 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30102623 Query: 229 aagtggcaacaaagtccttcagttt 253 ||||||||||||||||||||||||| Sbjct: 30102622 aagtggcaacaaagtccttcagttt 30102598 Score = 131 bits (66), Expect = 2e-27 Identities = 72/74 (97%) Strand = Plus / Minus Query: 369 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgttt 428 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 30102256 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 30102197 Query: 429 gctgcaatatgcac 442 |||||||| ||||| Sbjct: 30102196 gctgcaatgtgcac 30102183 Score = 129 bits (65), Expect = 8e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 262 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 321 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 30102448 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30102389 Query: 322 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 370 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 30102388 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30102340
>gb|AF439728.1|AF439728 Zea mays serine hydroxymethyltransferase mRNA, partial cds Length = 1028 Score = 145 bits (73), Expect = 1e-31 Identities = 79/81 (97%) Strand = Plus / Minus Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 1025 ggggttcccatcctgatgcctcctggcaccatagctgaaacatcaccaggaactgtgttc 966 Query: 423 ttgtttgctgcaatatgcaca 443 ||||||||||||||||||||| Sbjct: 965 ttgtttgctgcaatatgcaca 945
>ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.2 mRNA, complete cds Length = 1966 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1423 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1377 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.3 mRNA, complete cds Length = 2072 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1423 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1377 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.1 mRNA, complete cds Length = 1962 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1435 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1376 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1375 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1329 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1644 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1596
>gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1319 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1273 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1779 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 112 agttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatatt 171 |||| ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| | Sbjct: 1576 agtttttgtatttcatggtttctttctcaaacccgattgttgggaattgtttggcatact 1517 Query: 172 cctccacatcgtggcgaagctttgcaatttc 202 ||||||| |||||||| ||||||| |||||| Sbjct: 1516 cctccacgtcgtggcgtagctttgaaatttc 1486 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 330 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 389 ||||| ||||||||||| || || || || || ||||||||||| |||||||| || || Sbjct: 1361 tcctcttcaacaaatcccctagaagtgagagcaggggttcccattctgatgccaccagga 1302 Query: 390 accatagctgaaacatcaccaggaactgtgttcttgtttgctgcaat 436 ||||| || || |||||||||||||| ||||| || || |||||||| Sbjct: 1301 accatggcagacacatcaccaggaacagtgtttttattggctgcaat 1255
>dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase -like protein, complete cds, clone: RAFL22-26-M08 Length = 909 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 343 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 284 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 283 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 237 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 552 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 504
>emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1960 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1429 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1370 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1369 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1323 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1639 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1591
>gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1319 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1273 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransferase mRNA, complete cds Length = 1803 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 325 cgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctc 384 |||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||||| | Sbjct: 1363 cgaaatcctcctcaacaaatccccttgaagtaagcgcaggagttcccatcctgatgccac 1304 Query: 385 cgggtaccatagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 | || |||||||| || ||||| || ||||||||||| || || || |||||||| Sbjct: 1303 caggaaccatagcagacacatctcctggaactgtgtttttattagcagcaatatg 1249 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 117 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 176 |||||||||||||| |||| || || || || ||||| |||||||||||| | ||||| Sbjct: 1571 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaactcctca 1512 Query: 177 acatc 181 ||||| Sbjct: 1511 acatc 1507
>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1746 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 ||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| || | Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529 Query: 169 attcctccacatcgtggcgaagctttgcaatttcagcttggatg 212 |||||||||| || ||||| ||||||| ||||| | ||||||| Sbjct: 1528 attcctccacgtcatggcgtagctttgagatttctgattggatg 1485 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 314 ggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccat 373 |||||| || || |||||||| ||||||||||| || || || || || ||||||||||| Sbjct: 1386 ggcaactttagcaaagtcctcttcaacaaatcccctagaggtgagagcaggggttcccat 1327 Query: 374 cctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgtttgctgc 433 |||||||| || || ||||| || || |||||||||||||| ||||| || || ||||| Sbjct: 1326 tctgatgccaccaggaaccatggcagagacatcaccaggaacagtgtttttattggctgc 1267 Query: 434 aat 436 ||| Sbjct: 1266 aat 1264
>gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1933 Score = 93.7 bits (47), Expect = 5e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||| |||||||||||||| || || || |||||||| |||||| ||||| ||| Sbjct: 1434 tcctcaatgaatcctcttgatgtgagggctggtgttcccatatggatgccaccgggaacc 1375 Query: 393 atagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatg 439 || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 1374 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatg 1328 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1643 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1595
>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase Length = 1745 Score = 79.8 bits (40), Expect = 7e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 109 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 168 ||||||| |||||||||||||| |||||||| || || ||||| ||||| || || |||| Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504 Query: 169 attcctccacatcgtggcgaagctttgcaatttcag 204 | ||||||||||| || || || ||||||||||||| Sbjct: 1503 actcctccacatcatgacggagttttgcaatttcag 1468 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 366 gttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttg 425 |||||||| |||||||| || || ||||| || || ||||| |||||||| ||||||||| Sbjct: 1306 gttcccattctgatgccaccagggaccatggcagatacatctccaggaacggtgttcttg 1247 Query: 426 tttgctgcaatatg 439 || ||||||||||| Sbjct: 1246 ttggctgcaatatg 1233
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 377 gatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgtttgctgcaat 436 |||||| ||||| ||||| || ||||||||||||||||| || ||||||||||||||||| Sbjct: 22521 gatgccaccgggaaccatggcagaaacatcaccaggaacagtattcttgtttgctgcaat 22462 Query: 437 atg 439 ||| Sbjct: 22461 atg 22459 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 124 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 172 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 23145 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 23097
>gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence Length = 1923 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Minus Query: 330 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 389 |||||||||||||| ||||| || || || || ||||| ||||| | ||||| || ||| Sbjct: 1376 tcctcctcaacaaaacctctagaagtgagagctggggtgcccatgcgaatgccaccaggt 1317 Query: 390 accatagctgaaacatcaccaggaactgtgttcttgtttgctgcaatatgcac 442 ||||| || || ||||||||||| || || ||||| || |||||||||||||| Sbjct: 1316 accatggcagatacatcaccaggcacagtattcttattggctgcaatatgcac 1264 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Minus Query: 114 ttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcc 173 |||||||| ||||| || ||||||||||| || | || ||||||||||| ||||| ||| Sbjct: 1592 ttcttgtatttcattgtttctttctcgaaaccaacagtagggaattgtttggcatagtcc 1533 Query: 174 tc 175 || Sbjct: 1532 tc 1531
>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA, complete cds Length = 1822 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1677 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1630 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1484 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1425 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1424 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1365 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1364 ttgttggatgcaat 1351
>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88 Length = 198493 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 134324 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 134371
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project) Length = 147215 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 19909 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 19956
>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1 gene) Length = 1797 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1653 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1606 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1460 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1401 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1400 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1341 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1340 ttgttggatgcaat 1327
>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1775 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1348 ttgttggatgcaat 1335
>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1716 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1607 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1560 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1414 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1355 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1354 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1295 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1294 ttgttggatgcaat 1281
>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1730 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1608 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1561 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1415 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1356 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1355 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1296 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1295 ttgttggatgcaat 1282
>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1770 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1348 ttgttggatgcaat 1335
>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds Length = 1554 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1554 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1507 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1361 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1302 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1301 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1242 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1241 ttgttggatgcaat 1228
>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1771 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1650 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1603 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1457 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1398 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1397 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1338 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1337 ttgttggatgcaat 1324
>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence Length = 1725 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 110 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 157 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1616 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1569 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 303 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 362 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1423 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1364 Query: 363 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttc 422 || || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct: 1363 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1304 Query: 423 ttgtttgctgcaat 436 ||||| | |||||| Sbjct: 1303 ttgttggatgcaat 1290
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 117 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 176 ||||||||||| || | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 7579 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 7520 Query: 177 acatcgtggcgaagctttgcaat 199 ||||||||||||||||||||||| Sbjct: 7519 acatcgtggcgaagctttgcaat 7497 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 369 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgttt 428 ||||||| |||||| || || |||||||| || ||||| || ||||| ||||| || ||| Sbjct: 7111 cccatccggatgccaccaggaaccatagcagacacatctcccggaacggtgtttttattt 7052 Query: 429 gctgcaat 436 |||||||| Sbjct: 7051 gctgcaat 7044
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 117 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 176 ||||||||||| || | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 95182 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 95123 Query: 177 acatcgtggcgaagctttgcaat 199 ||||||||||||||||||||||| Sbjct: 95122 acatcgtggcgaagctttgcaat 95100 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 369 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgttt 428 ||||||| |||||| || || |||||||| || ||||| || ||||| ||||| || ||| Sbjct: 94714 cccatccggatgccaccaggaaccatagcagacacatctcccggaacggtgtttttattt 94655 Query: 429 gctgcaat 436 |||||||| Sbjct: 94654 gctgcaat 94647
>gb|DQ139269.1| Medicago truncatula serine hydroxymethyltransferase mRNA, complete cds Length = 1524 Score = 50.1 bits (25), Expect = 0.006 Identities = 73/89 (82%) Strand = Plus / Minus Query: 333 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 392 ||||||||||| || || |||||||| || || |||||||| ||||| ||||| || ||| Sbjct: 1301 tcctcaacaaaacccctagatgtaagagcaggagttcccattctgatccctccaggaacc 1242 Query: 393 atagctgaaacatcaccaggaactgtgtt 421 || || || ||||| || ||||| ||||| Sbjct: 1241 attgcagacacatctcctggaacagtgtt 1213
>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence Length = 113964 Score = 46.1 bits (23), Expect = 0.097 Identities = 59/71 (83%) Strand = Plus / Minus Query: 369 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttcttgttt 428 ||||||||||| || || || |||||||| || ||||| || ||||| ||||| || || Sbjct: 58327 cccatcctgataccaccaggaaccatagcagacacatctcctggaacagtgtttttatta 58268 Query: 429 gctgcaatatg 439 ||||||||||| Sbjct: 58267 gctgcaatatg 58257 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 325 cgaagtcctcctcaacaaatcctcttgatgtaag 358 |||| ||||||||||||||||| ||||| ||||| Sbjct: 58456 cgaaatcctcctcaacaaatccccttgaagtaag 58423
>gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase mRNA, partial cds Length = 284 Score = 46.1 bits (23), Expect = 0.097 Identities = 50/59 (84%) Strand = Plus / Minus Query: 117 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctc 175 |||||||||||||| |||| || || || || ||||| |||||||||||| ||||||| Sbjct: 68 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaattcctc 10
>ref|XM_706590.1| Candida albicans SC5314 hypothetical protein (SHM1) partial mRNA Length = 1482 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 395 agctgaaacatcaccaggaactgtgttctt 424 |||||| |||||||||||||| |||||||| Sbjct: 1221 agctgatacatcaccaggaacggtgttctt 1192
>gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence Length = 201274 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 ctttaaccttcaaagccaagtt 292 |||||||||||||||||||||| Sbjct: 32135 ctttaaccttcaaagccaagtt 32114
>ref|XM_883849.1| Candida albicans SC5314 hypothetical protein (CaJ7.0385) partial mRNA Length = 1482 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 395 agctgaaacatcaccaggaactgtgttctt 424 |||||| |||||||||||||| |||||||| Sbjct: 1221 agctgatacatcaccaggaacggtgttctt 1192
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 395 agctgaaacatcaccaggaactgtgttctt 424 |||||| |||||||||||||| |||||||| Sbjct: 736359 agctgatacatcaccaggaacggtgttctt 736388
>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3, complete sequence Length = 122049 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 tttcagcttggatgttgctgt 219 ||||||||||||||||||||| Sbjct: 104450 tttcagcttggatgttgctgt 104470
>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence Length = 177777 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tgatatattgtatgtgtttct 45 ||||||||||||||||||||| Sbjct: 124463 tgatatattgtatgtgtttct 124443
>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence Length = 180486 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 tgatatattgtatgtgtttct 45 ||||||||||||||||||||| Sbjct: 145119 tgatatattgtatgtgtttct 145139
>gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y, complete sequence Length = 209287 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 tttcagcttggatgttgctgt 219 ||||||||||||||||||||| Sbjct: 169390 tttcagcttggatgttgctgt 169410
>ref|NM_029434.1| Mus musculus RIKEN cDNA 4930431B11 gene (4930431B11Rik), transcript variant 1, mRNA Length = 1982 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 atattgtatgtgtttcttaa 48 |||||||||||||||||||| Sbjct: 1927 atattgtatgtgtttcttaa 1946
>gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, complete sequence Length = 185681 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gggttcccatcctgatgcct 383 |||||||||||||||||||| Sbjct: 170075 gggttcccatcctgatgcct 170094
>emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, complete sequence Length = 12999 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 ggcgaagctttgcaatttcagctt 207 |||||||||| ||||||||||||| Sbjct: 7977 ggcgaagcttggcaatttcagctt 8000
>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence Length = 191116 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 aggaactgtgttcttgtttg 429 |||||||||||||||||||| Sbjct: 74177 aggaactgtgttcttgtttg 74158
>gb|AC116734.14| Mus musculus chromosome 7, clone RP23-359D11, complete sequence Length = 217741 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gggttcccatcctgatgcct 383 |||||||||||||||||||| Sbjct: 34173 gggttcccatcctgatgcct 34192
>gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, complete sequence Length = 165863 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gaagctttgcaatttcagct 206 |||||||||||||||||||| Sbjct: 21826 gaagctttgcaatttcagct 21807
>gb|AC146632.23| Medicago truncatula clone mth2-57b3, complete sequence Length = 139216 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ttggaggagagataatttgtttct 75 ||||||| |||||||||||||||| Sbjct: 124277 ttggaggtgagataatttgtttct 124300
>emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin heavy chain 3 (MHC-A) Length = 11621 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 ggcgaagctttgcaatttcagctt 207 |||||||||| ||||||||||||| Sbjct: 7886 ggcgaagcttggcaatttcagctt 7863
>gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, complete sequence Length = 170722 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ttcttgtacttcatggtctc 133 |||||||||||||||||||| Sbjct: 117303 ttcttgtacttcatggtctc 117322
>ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain structural genes family member (myo-3) (myo-3) mRNA, complete cds Length = 6059 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 ggcgaagctttgcaatttcagctt 207 |||||||||| ||||||||||||| Sbjct: 3565 ggcgaagcttggcaatttcagctt 3542
>dbj|AK015260.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930431B11 product:similar to BA342L8.1 (NOVEL PROTEIN SIMILAR TO C21ORF13) [Homo sapiens], full insert sequence Length = 1982 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 atattgtatgtgtttcttaa 48 |||||||||||||||||||| Sbjct: 1927 atattgtatgtgtttcttaa 1946
>gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosome 13, complete sequence Length = 178290 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gaagctttgcaatttcagct 206 |||||||||||||||||||| Sbjct: 83245 gaagctttgcaatttcagct 83226
>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete sequence Length = 116154 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 ttggaggagagataatttgtttct 75 ||||||| |||||||||||||||| Sbjct: 115833 ttggaggtgagataatttgtttct 115810
>gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA clone MGC:84058 IMAGE:6948237), complete cds Length = 6578 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 acctgctgctgcagctttaa 276 |||||||||||||||||||| Sbjct: 240 acctgctgctgcagctttaa 221
>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence Length = 166132 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 atattgtatgtgtttcttaa 48 |||||||||||||||||||| Sbjct: 117750 atattgtatgtgtttcttaa 117769
>gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 97451 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 atattgtatgtgtttcttaa 48 |||||||||||||||||||| Sbjct: 28330 atattgtatgtgtttcttaa 28311
>dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, complete cds Length = 1449 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cagtttggtacctgctgctg 267 |||||||||||||||||||| Sbjct: 1203 cagtttggtacctgctgctg 1222 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,397,479 Number of Sequences: 3902068 Number of extensions: 4397479 Number of successful extensions: 113912 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113709 Number of HSP's gapped (non-prelim): 202 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)