>ACHA3_CARAU (P18845) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor (GF-alpha-3)
          Length = 512

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 230 RRLPLFYTINLIIPCLLISFLTILVFYLPSDCGEK-VTLCISVLLSLT 276

>ACHA3_CHICK (P09481) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 496

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 229 RRLPLFYTINMIIPCLLISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 275

>ACHA3_HUMAN (P32297) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 503

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 236 RRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 282

>ACHA3_BOVIN (Q07263) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 495

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 228 RRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 274

>ACHA3_RAT (P04757) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 499

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 232 RRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 278

>ACHA3_MOUSE (Q8R4G9) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 499

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 232 RRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 278

>ACHA2_RAT (P12389) Neuronal acetylcholine receptor protein, alpha-2 subunit|
           precursor
          Length = 511

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 239 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-ITLCISVLLSLT 285

>ACHA2_MOUSE (Q91X60) Neuronal acetylcholine receptor protein, alpha-2 subunit|
           precursor
          Length = 512

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 239 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-ITLCISVLLSLT 285

>ACHA4_PANTR (Q5IS77) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 240 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-ITLCISVLLSLT 286

>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 240 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-ITLCISVLLSLT 286

>ACHA4_CHICK (P09482) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 622

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 235 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-ITLCISVLLSLT 281

>ACHA4_MOUSE (O70174) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 629

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 242 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-VTLCISVLLSLT 288

>ACHA4_RAT (P09483) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 630

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPSECGEK +  C SV   LT
Sbjct: 242 RRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK-VTLCISVLLSLT 288

>ACHA6_RAT (P43143) Neuronal acetylcholine receptor protein, alpha-6 subunit|
           precursor
          Length = 493

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+P+ + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 237 RRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 283

>ACHA6_PANTR (Q5IS76) Neuronal acetylcholine receptor protein, alpha-6 subunit|
           precursor
          Length = 494

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+P+ + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 237 RRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 283

>ACHA6_MOUSE (Q9R0W9) Neuronal acetylcholine receptor protein, alpha-6 subunit|
           precursor
          Length = 494

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+P+ + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 237 RRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 283

>ACHA6_HUMAN (Q15825) Neuronal acetylcholine receptor protein, alpha-6 subunit|
           precursor
          Length = 494

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+P+ + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 237 RRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 283

>ACHA6_CHICK (P49581) Neuronal acetylcholine receptor protein, alpha-6 subunit|
           precursor
          Length = 494

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+P+ + IN     L   + + + F+LPS+CGEK +  C SV   LT
Sbjct: 237 RRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEK-VTLCISVLLSLT 283

>ACHA2_CHICK (P09480) Neuronal acetylcholine receptor protein, alpha-2 subunit|
           precursor
          Length = 528

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPS+CGEK +  C SV   LT
Sbjct: 237 RRLPLFYTINLIIPCLLISCLTVLVFYLPSDCGEK-ITLCISVLLSLT 283

>ACHA2_HUMAN (Q15822) Neuronal acetylcholine receptor protein, alpha-2 subunit|
           precursor
          Length = 529

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 277 QRIPLHWAIN*CCNALAAHYQSFM-FHLPSECGEKPLFYCRSVHAKLT 137
           +R+PL + IN     L     + + F+LPS+CGEK +  C SV   LT
Sbjct: 262 RRLPLFYTINLIIPCLLISCLTVLVFYLPSDCGEK-ITLCISVLLSLT 308

>CHIA_RAT (Q6RY07) Acidic mammalian chitinase precursor (EC 3.2.1.14)|
           (AMCase)
          Length = 473

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 377 AAIWNCSFASFTGSCCMVLFRTFPVDGLLPELNLVMTSGTSAPFRRSEPYAT 532
           A IW      FTGS C      FP+   L +   + T+G +AP   SEP  T
Sbjct: 357 AMIWAIDLDDFTGSFCDQ--GKFPLTSTLNKALDIPTAGCTAPDLPSEPVTT 406

>RNFC_PASMU (Q9CNP2) Electron transport complex protein rnfC|
          Length = 835

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = -3

Query: 489 EVITRFNSGKS-PSTGKV----RKRTIQQDPVKLAK--EQFQIAAESGSDLGLRWLKRLG 331
           +V+TRFNSGK     G V    RK    Q P++ AK  E F I     +      L ++G
Sbjct: 2   DVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNILVKVG 61

Query: 330 DYEKEPQELKQ 298
           DY  + Q L Q
Sbjct: 62  DYVFKGQPLTQ 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,543,275
Number of Sequences: 219361
Number of extensions: 1653044
Number of successful extensions: 4313
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4309
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)