ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63i16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464530.1| Oryza sativa (japonica cultivar-group), mRNA 268 2e-68
2ref|XM_507458.1| PREDICTED Oryza sativa (japonica cultivar-group... 268 2e-68
3ref|XM_506752.2| PREDICTED Oryza sativa (japonica cultivar-group... 268 2e-68
4dbj|AK101844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
5dbj|AK099277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
6dbj|AK068376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
7gb|AY110039.1| Zea mays CL15732_1 mRNA sequence 202 9e-49
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
9dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
10ref|NM_128115.2| Arabidopsis thaliana unknown protein AT2G25570 ... 76 1e-10
11gb|BT015506.1| Arabidopsis thaliana At2g25570 mRNA sequence 76 1e-10
12gb|BT025254.1| Arabidopsis thaliana At2g25570 mRNA, complete cds 76 1e-10
13gb|DQ446566.1| Arabidopsis thaliana clone pENTR221-At2g25565 unk... 76 1e-10
14emb|BX821444.1|CNS0A95N Arabidopsis thaliana Full-length cDNA Co... 76 1e-10
15gb|AY086172.1| Arabidopsis thaliana clone 21954 mRNA, complete s... 76 1e-10
16dbj|AK176743.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 76 1e-10
17emb|BX821302.1|CNS0A929 Arabidopsis thaliana Full-length cDNA Co... 68 4e-08
18gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B15 ma... 52 0.002
19gb|AC006053.3| Arabidopsis thaliana chromosome 2 clone F3N11 map... 52 0.002
20gb|BT013087.1| Lycopersicon esculentum clone 114353F, mRNA sequence 46 0.13
21emb|BX901957.4| Zebrafish DNA sequence from clone CH211-150G5 in... 44 0.51
22emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on ... 44 0.51
23emb|AL136449.10| Human DNA sequence from clone RP1-292M15 on chr... 44 0.51
24ref|XM_681907.1| PREDICTED: Danio rerio similar to tryptase 4 (L... 44 0.51
25dbj|AP004951.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.51
26gb|AC159381.10| Mus musculus 6 BAC RP24-460E4 (Roswell Park Canc... 42 2.0
27gb|AC183376.4| Pan troglodytes BAC clone CH251-735O6 from chromo... 42 2.0
28gb|AC183528.2| Pan troglodytes BAC clone CH251-737P22 from chrom... 42 2.0
29gb|AC007964.3| Homo sapiens BAC clone GS1-179L18 from 7, complet... 42 2.0
30emb|AL359457.12| Human DNA sequence from clone RP11-76K19 on chr... 42 2.0
31emb|AL355132.19| Human DNA sequence from clone RP11-181D10 on ch... 42 2.0
32emb|BX640588.5| Zebrafish DNA sequence from clone DKEY-110L7 in ... 42 2.0
33gb|AC174233.4| Pan troglodytes BAC clone CH251-560K10 from chrom... 42 2.0
34gb|AC013734.4|AC013734 Homo sapiens BAC clone RP11-557B9 from Y,... 42 2.0
35gb|AC006327.3| Homo sapiens BAC clone RP11-59I21 from 2, complet... 42 2.0
36emb|BX255963.11| Zebrafish DNA sequence from clone CH211-195D17 ... 42 2.0
37gb|AC170088.9| Mus musculus BAC RP23-94A1 (Roswell Park Cancer ... 42 2.0
38ref|XM_631998.1| Dictyostelium discoideum ABC transporter C fami... 40 8.0
39ref|NM_001031383.1| Gallus gallus phosphoglucomutase 2 (PGM2), mRNA 40 8.0
40gb|AF053356.1| Homo sapiens chromosome 7q22 sequence, complete s... 40 8.0
41gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 40 8.0
42ref|XM_868499.1| PREDICTED: Bos taurus similar to tolloid-like 1... 40 8.0
43gb|AC138376.11| Mus musculus chromosome 7, clone RP23-53O7, comp... 40 8.0
44ref|XM_420895.1| PREDICTED: Gallus gallus similar to phosphogluc... 40 8.0
45gb|AC074277.6| Homo sapiens 3 BAC RP11-82N13 (Roswell Park Cance... 40 8.0
46gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone... 40 8.0
47emb|AL096710.8|HSDJ61B2 Human DNA sequence from clone RP1-61B2 o... 40 8.0
48emb|AJ721042.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.0
49gb|AC098972.2| Homo sapiens chromosome 3 clone RP11-197J13, comp... 40 8.0
50gb|AF474335.1| Dictyostelium discoideum ABC transporter ABCC.3 (... 40 8.0
51ref|XM_682795.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 8.0
52gb|AC009488.5| Homo sapiens BAC clone RP11-336D7 from 7, complet... 40 8.0
53gb|AC154203.2| Mus musculus BAC clone RP24-387L1 from chromosome... 40 8.0
54gb|AC090514.1|AC090514 Homo sapiens chromosome 15 clone RP11-2O1... 40 8.0
55gb|AC023829.6| Homo sapiens chromosome 16 clone RP11-578P21, com... 40 8.0
56gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome... 40 8.0
57gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,... 40 8.0
58gb|M97764.1|HUMERPALU Homo sapiens erythropoietin gene 5' flank ... 40 8.0 
>ref|XM_464530.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1149

 Score =  268 bits (135), Expect = 2e-68
 Identities = 237/271 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 908 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 849

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 848 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 789

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 788 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 729

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           |||||||| |  |||||||| |||||||||| |||||||||||  |||||||||||||| 
Sbjct: 728 gcaccttttaatagaagtgatccatatgcaattgcagctccagagtgtcccttttctgat 669

                                          
Query: 560 gctctatggaaacaccacatagctgaagcta 590
           ||||| |||||||||||||| ||||||||||
Sbjct: 668 gctctgtggaaacaccacattgctgaagcta 638
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>ref|XM_507458.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1135_F06.7 mRNA
          Length = 1209

 Score =  268 bits (135), Expect = 2e-68
 Identities = 237/271 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 936 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 877

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 876 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 817

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 816 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 757

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           |||||||| |  |||||||| |||||||||| |||||||||||  |||||||||||||| 
Sbjct: 756 gcaccttttaatagaagtgatccatatgcaattgcagctccagagtgtcccttttctgat 697

                                          
Query: 560 gctctatggaaacaccacatagctgaagcta 590
           ||||| |||||||||||||| ||||||||||
Sbjct: 696 gctctgtggaaacaccacattgctgaagcta 666
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>ref|XM_506752.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1135_F06.7 mRNA
          Length = 1299

 Score =  268 bits (135), Expect = 2e-68
 Identities = 237/271 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 908 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 849

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 848 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 789

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 788 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 729

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           |||||||| |  |||||||| |||||||||| |||||||||||  |||||||||||||| 
Sbjct: 728 gcaccttttaatagaagtgatccatatgcaattgcagctccagagtgtcccttttctgat 669

                                          
Query: 560 gctctatggaaacaccacatagctgaagcta 590
           ||||| |||||||||||||| ||||||||||
Sbjct: 668 gctctgtggaaacaccacattgctgaagcta 638
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>dbj|AK101844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H18, full
           insert sequence
          Length = 1299

 Score =  268 bits (135), Expect = 2e-68
 Identities = 237/271 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 908 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 849

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 848 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 789

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 788 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 729

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           |||||||| |  |||||||| |||||||||| |||||||||||  |||||||||||||| 
Sbjct: 728 gcaccttttaatagaagtgatccatatgcaattgcagctccagagtgtcccttttctgat 669

                                          
Query: 560 gctctatggaaacaccacatagctgaagcta 590
           ||||| |||||||||||||| ||||||||||
Sbjct: 668 gctctgtggaaacaccacattgctgaagcta 638
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>dbj|AK099277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C15, full
           insert sequence
          Length = 1149

 Score =  268 bits (135), Expect = 2e-68
 Identities = 237/271 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 908 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 849

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 848 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 789

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 788 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 729

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           |||||||| |  |||||||| |||||||||| |||||||||||  |||||||||||||| 
Sbjct: 728 gcaccttttaatagaagtgatccatatgcaattgcagctccagagtgtcccttttctgat 669

                                          
Query: 560 gctctatggaaacaccacatagctgaagcta 590
           ||||| |||||||||||||| ||||||||||
Sbjct: 668 gctctgtggaaacaccacattgctgaagcta 638
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>dbj|AK068376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150O18, full
           insert sequence
          Length = 1209

 Score =  268 bits (135), Expect = 2e-68
 Identities = 237/271 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 936 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 877

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 876 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 817

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 816 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 757

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           |||||||| |  |||||||| |||||||||| |||||||||||  |||||||||||||| 
Sbjct: 756 gcaccttttaatagaagtgatccatatgcaattgcagctccagagtgtcccttttctgat 697

                                          
Query: 560 gctctatggaaacaccacatagctgaagcta 590
           ||||| |||||||||||||| ||||||||||
Sbjct: 696 gctctgtggaaacaccacattgctgaagcta 666
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>gb|AY110039.1| Zea mays CL15732_1 mRNA sequence
          Length = 1212

 Score =  202 bits (102), Expect = 9e-49
 Identities = 212/248 (85%), Gaps = 3/248 (1%)
 Strand = Plus / Minus

                                                                       
Query: 320 ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
           ||||| ||| || ||||||||||||||||||| | |||||| ||| | || | |||||||
Sbjct: 877 ttttcataagcttcaagcctcttcaaccaccgcagaccgagatcacagcctgcctcagct 818

                                                                       
Query: 380 gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
           || || || ||||||||||| || ||||||||||| |||||||||  ||||||||| |||
Sbjct: 817 gcaatttgaaactgttctttcgctagctttactggatcctgctgttgggtccttttccgc 758

                                                                       
Query: 440 accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
           |  ||||||||||| ||||||||||||||||||||||| ||||| |||||||| | ||||
Sbjct: 757 attttcccagttgatggactcttgcctgagttgaaccttgtaataacttcaggtatttca 698

                                                                       
Query: 500 gcacctttcagaagaagtgaaccatatgcaactgcagctccagcatgtcccttttctgaa 559
           ||||||||   |||||| || |||||||| |  || || |||||||||||||||||||||
Sbjct: 697 gcaccttt---aagaagggatccatatgcgatagctgcaccagcatgtcccttttctgaa 641

                   
Query: 560 gctctatg 567
           ||||||||
Sbjct: 640 gctctatg 633
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  178 bits (90), Expect = 1e-41
 Identities = 162/186 (87%)
 Strand = Plus / Plus

                                                                           
Query: 320     ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
               ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 5745183 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 5745242

                                                                           
Query: 380     gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
               || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 5745243 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 5745302

                                                                           
Query: 440     accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
               | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 5745303 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 5745362

                     
Query: 500     gcacct 505
               ||||||
Sbjct: 5745363 gcacct 5745368



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 549     ccttttctgaagctctatggaaacaccacatagctgaagcta 590
               |||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 5745694 ccttttctgatgctctgtggaaacaccacattgctgaagcta 5745735



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 512     agaagtgaaccatatgcaactgcagctccagcatgtccct 551
               |||||||| |||||||||| |||||||||||  |||||||
Sbjct: 5745577 agaagtgatccatatgcaattgcagctccagagtgtccct 5745616
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>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score =  178 bits (90), Expect = 1e-41
 Identities = 162/186 (87%)
 Strand = Plus / Plus

                                                                         
Query: 320   ttttcgtaatctccaagcctcttcaaccaccgtaaaccgaggtcagatccagactcagct 379
             ||||| ||||| ||||||||||||| ||| || |||||||| ||| ||||||  ||||||
Sbjct: 34697 ttttcataatccccaagcctcttcagccatcgcaaaccgagatcacatccagcttcagct 34756

                                                                         
Query: 380   gctatctggaactgttcttttgcaagctttactgggtcctgctgtatggtcctttttcgc 439
             || || || ||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct: 34757 gcaatttgaaactgctcctttgctagcttcactggatcctgctgtatgggcctttttcgc 34816

                                                                         
Query: 440   accttcccagttgacggactcttgcctgagttgaacctggtaatgacttcaggcacttca 499
             | ||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 34817 atctttccagttgatggactcttacctgagttgaacctggtaataacctcaggcacttca 34876

                   
Query: 500   gcacct 505
             ||||||
Sbjct: 34877 gcacct 34882



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 549   ccttttctgaagctctatggaaacaccacatagctgaagcta 590
             |||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 35208 ccttttctgatgctctgtggaaacaccacattgctgaagcta 35249



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 512   agaagtgaaccatatgcaactgcagctccagcatgtccct 551
             |||||||| |||||||||| |||||||||||  |||||||
Sbjct: 35091 agaagtgatccatatgcaattgcagctccagagtgtccct 35130
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>ref|NM_128115.2| Arabidopsis thaliana unknown protein AT2G25570 mRNA, complete cds
          Length = 1129

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 684 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 631
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>gb|BT015506.1| Arabidopsis thaliana At2g25570 mRNA sequence
          Length = 822

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 560 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 507
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>gb|BT025254.1| Arabidopsis thaliana At2g25570 mRNA, complete cds
          Length = 867

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 605 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 552
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>gb|DQ446566.1| Arabidopsis thaliana clone pENTR221-At2g25565 unknown (At2g25565)
           mRNA, complete cds
          Length = 867

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 605 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 552
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>emb|BX821444.1|CNS0A95N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL42ZB07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 980

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 626 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 573
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>gb|AY086172.1| Arabidopsis thaliana clone 21954 mRNA, complete sequence
          Length = 1103

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 684 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 631
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>dbj|AK176743.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-28-I06
          Length = 1076

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 652 gcagcaccagcatgtcccttctctgaagccctatggaaacaccatatagctgaa 599
to top
>emb|BX821302.1|CNS0A929 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL32ZG02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 991

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 533 gcagctccagcatgtcccttttctgaagctctatggaaacaccacatagctgaa 586
           ||||| |||||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 618 gcagcaccagcatgtcccttctctgaagccctatggaaacaccataaagctgaa 565
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>gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B15 map mi238, complete
             sequence
          Length = 88770

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 549   ccttttctgaagctctatggaaacaccacatagctgaa 586
             |||| |||||||| |||||||||||||| |||||||||
Sbjct: 85828 ccttctctgaagccctatggaaacaccatatagctgaa 85865
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>gb|AC006053.3| Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete
            sequence
          Length = 100745

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 549  ccttttctgaagctctatggaaacaccacatagctgaa 586
            |||| |||||||| |||||||||||||| |||||||||
Sbjct: 3576 ccttctctgaagccctatggaaacaccatatagctgaa 3613
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>gb|BT013087.1| Lycopersicon esculentum clone 114353F, mRNA sequence
          Length = 1392

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 536 gctccagcatgtcccttttctgaagctctatggaaacaccaca 578
           ||||||||||| ||||| |  || |||||||||||||||||||
Sbjct: 696 gctccagcatgacccttctgagatgctctatggaaacaccaca 654
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>emb|BX901957.4| Zebrafish DNA sequence from clone CH211-150G5 in linkage group 15,
             complete sequence
          Length = 175019

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 378   ctgctatctggaactgttcttt 399
             ||||||||||||||||||||||
Sbjct: 24770 ctgctatctggaactgttcttt 24791
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>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the
              5' end of the GRIA3 gene for glutamate receptor,
              ionotrophic, AMPA 3, the gene for a novel protein and a CpG
              island, complete sequence
          Length = 169693

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 298    ttgctttagctcttggggctcttttt 323
              |||||||||||||| |||||||||||
Sbjct: 131673 ttgctttagctcttcgggctcttttt 131698
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>emb|AL136449.10| Human DNA sequence from clone RP1-292M15 on chromosome Xq25-26.3,
             complete sequence
          Length = 24756

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 299   tgctttagctcttggggctctttttc 324
             |||||||||| |||||||||||||||
Sbjct: 23238 tgctttagctgttggggctctttttc 23213
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>ref|XM_681907.1| PREDICTED: Danio rerio similar to tryptase 4 (LOC558663), mRNA
          Length = 942

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 378 ctgctatctggaactgttcttt 399
           ||||||||||||||||||||||
Sbjct: 40  ctgctatctggaactgttcttt 19
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>dbj|AP004951.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT26I01, TM0124,
             complete sequence
          Length = 79571

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 502   acctttcagaagaagtgaaccatatgcaactgcagctccagcatgtccct 551
             |||||| |||||||| || ||||||||||  || ||||||||||| ||||
Sbjct: 65060 acctttaagaagaagagatccatatgcaatagctgctccagcatgcccct 65011
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>gb|AC159381.10| Mus musculus 6 BAC RP24-460E4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 211463

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 518    gaaccatatgcaactgcagctccag 542
              |||||| ||||||||||||||||||
Sbjct: 129762 gaaccacatgcaactgcagctccag 129786
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>gb|AC183376.4| Pan troglodytes BAC clone CH251-735O6 from chromosome 13, complete
              sequence
          Length = 188255

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    gtcattgctgaatttgcttta 305
              |||||||||||||||||||||
Sbjct: 173648 gtcattgctgaatttgcttta 173668
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>gb|AC183528.2| Pan troglodytes BAC clone CH251-737P22 from chromosome 13, complete
              sequence
          Length = 202694

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    gtcattgctgaatttgcttta 305
              |||||||||||||||||||||
Sbjct: 164334 gtcattgctgaatttgcttta 164354
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>gb|AC007964.3| Homo sapiens BAC clone GS1-179L18 from 7, complete sequence
          Length = 154706

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 175    gtttctctccacattctgaaggcag 199
              ||||||||||||||| |||||||||
Sbjct: 154156 gtttctctccacattttgaaggcag 154180
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>emb|AL359457.12| Human DNA sequence from clone RP11-76K19 on chromosome 13 Contains a
            mitochondrial ribosomal protein S31 (MRPS31) pseudogene
            an estrogen-related receptor alpha pseudogene (ESRRAP),
            the 5' end of a novel gene, a novel protein (LOC113201)
            pseudogene, a novel gene and four CpG islands, complete
            sequence
          Length = 129779

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 285  gtcattgctgaatttgcttta 305
            |||||||||||||||||||||
Sbjct: 6364 gtcattgctgaatttgcttta 6384
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>emb|AL355132.19| Human DNA sequence from clone RP11-181D10 on chromosome 13 Contains a
              ring finger protein 12 (RNF12) pseudogene, the 5' end of
              the FOXO1A gene for forkhead box O1A (rhabdomyosarcoma),
              the 3' end of the MRPS31 gene for mitochondrial ribosomal
              protein S31 and a CpG island, complete sequence
          Length = 151261

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    gtcattgctgaatttgcttta 305
              |||||||||||||||||||||
Sbjct: 118369 gtcattgctgaatttgcttta 118389
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>emb|BX640588.5| Zebrafish DNA sequence from clone DKEY-110L7 in linkage group 6,
            complete sequence
          Length = 117506

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  ctgctatctggaactgttctt 398
            |||||||||||||||||||||
Sbjct: 9745 ctgctatctggaactgttctt 9765
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>gb|AC174233.4| Pan troglodytes BAC clone CH251-560K10 from chromosome unknown, complete
              sequence
          Length = 179813

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 513    gaagtgaaccatatgcaactg 533
              |||||||||||||||||||||
Sbjct: 113389 gaagtgaaccatatgcaactg 113369
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>gb|AC013734.4|AC013734 Homo sapiens BAC clone RP11-557B9 from Y, complete sequence
          Length = 180019

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 285    gtcattgctgaatttgcttta 305
              |||||||||||||||||||||
Sbjct: 119055 gtcattgctgaatttgcttta 119035
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>gb|AC006327.3| Homo sapiens BAC clone RP11-59I21 from 2, complete sequence
          Length = 92705

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 513   gaagtgaaccatatgcaactg 533
             |||||||||||||||||||||
Sbjct: 65244 gaagtgaaccatatgcaactg 65264
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>emb|BX255963.11| Zebrafish DNA sequence from clone CH211-195D17 in linkage group 20,
             complete sequence
          Length = 103956

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   tgctatctggaactgttcttt 399
             |||||||||||||||||||||
Sbjct: 96687 tgctatctggaactgttcttt 96707
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>gb|AC170088.9| Mus musculus  BAC RP23-94A1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 253441

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 518   gaaccatatgcaactgcagctccag 542
             |||||| ||||||||||||||||||
Sbjct: 11893 gaaccacatgcaactgcagctccag 11917
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>ref|XM_631998.1| Dictyostelium discoideum ABC transporter C family protein
            (DDB0216251), partial mRNA
          Length = 4239

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 223  gtgcagcaagagcattgcaacatcaatt 250
            ||||| ||||||||||||| ||||||||
Sbjct: 2435 gtgcatcaagagcattgcatcatcaatt 2462
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>ref|NM_001031383.1| Gallus gallus phosphoglucomutase 2 (PGM2), mRNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 195  ggcagatgaaacatgaagctctggtaat 222
            ||||||||||| |||||||| |||||||
Sbjct: 1450 ggcagatgaaatatgaagctttggtaat 1423
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>gb|AF053356.1| Homo sapiens chromosome 7q22 sequence, complete sequence
          Length = 227968

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   tccagcatgtcccttttctg 557
             ||||||||||||||||||||
Sbjct: 62018 tccagcatgtcccttttctg 62037
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>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tctccacattctgaaggcag 199
              ||||||||||||||||||||
Sbjct: 149048 tctccacattctgaaggcag 149029
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>ref|XM_868499.1| PREDICTED: Bos taurus similar to tolloid-like 1 (LOC616468),
           partial mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 485 acttcaggcacttcagcacc 504
           ||||||||||||||||||||
Sbjct: 941 acttcaggcacttcagcacc 922
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>gb|AC138376.11| Mus musculus chromosome 7, clone RP23-53O7, complete sequence
          Length = 247484

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    caggcacttcagcacctttc 508
              ||||||||||||||||||||
Sbjct: 168070 caggcacttcagcacctttc 168051
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>ref|XM_420895.1| PREDICTED: Gallus gallus similar to phosphoglucomutase 2
           (LOC422961), partial mRNA
          Length = 1664

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 195 ggcagatgaaacatgaagctctggtaat 222
           ||||||||||| |||||||| |||||||
Sbjct: 762 ggcagatgaaatatgaagctttggtaat 735
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>gb|AC074277.6| Homo sapiens 3 BAC RP11-82N13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175064

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 298    ttgctttagctcttggggctctttttcg 325
              ||||||| ||| ||||||||||||||||
Sbjct: 141299 ttgctttggctattggggctctttttcg 141326
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>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
             complete sequence
          Length = 202430

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   tctccacattctgaaggcag 199
             ||||||||||||||||||||
Sbjct: 81224 tctccacattctgaaggcag 81205
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>emb|AL096710.8|HSDJ61B2 Human DNA sequence from clone RP1-61B2 on chromosome 6p11.2-12.3
             Contains part of the BPAG1 gene for bullous pemphigoid
             antigen 1 (230/240kD), complete sequence
          Length = 119666

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   aacaaaggtttctctccacattct 191
             ||||| ||||||||||||||||||
Sbjct: 91024 aacaagggtttctctccacattct 91047
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>emb|AJ721042.1| Gallus gallus mRNA for hypothetical protein, clone 33e1
          Length = 2141

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 195  ggcagatgaaacatgaagctctggtaat 222
            ||||||||||| |||||||| |||||||
Sbjct: 1450 ggcagatgaaatatgaagctttggtaat 1423
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>gb|AC098972.2| Homo sapiens chromosome 3 clone RP11-197J13, complete sequence
          Length = 145993

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   tctttggctggaggtcattg 291
             ||||||||||||||||||||
Sbjct: 69840 tctttggctggaggtcattg 69859
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>gb|AF474335.1| Dictyostelium discoideum ABC transporter ABCC.3 (abcC3) gene,
            complete cds
          Length = 6007

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 223  gtgcagcaagagcattgcaacatcaatt 250
            ||||| ||||||||||||| ||||||||
Sbjct: 3306 gtgcatcaagagcattgcatcatcaatt 3333
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>ref|XM_682795.1| PREDICTED: Danio rerio hypothetical protein LOC559455 (LOC559455),
           mRNA
          Length = 1656

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 375 cagctgctatctggaactgttctt 398
           |||||||| |||||||||||||||
Sbjct: 46  cagctgctttctggaactgttctt 23
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>gb|AC009488.5| Homo sapiens BAC clone RP11-336D7 from 7, complete sequence
          Length = 98876

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   tccagcatgtcccttttctg 557
             ||||||||||||||||||||
Sbjct: 56138 tccagcatgtcccttttctg 56119
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>gb|AC154203.2| Mus musculus BAC clone RP24-387L1 from chromosome 13, complete sequence
          Length = 174845

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    tcagcacctttcagaagaag 516
              ||||||||||||||||||||
Sbjct: 116393 tcagcacctttcagaagaag 116412
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>gb|AC090514.1|AC090514 Homo sapiens chromosome 15 clone RP11-2O16 map 15q15, complete sequence
          Length = 166518

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     aaaatccttagtggcaaaaa 32
              ||||||||||||||||||||
Sbjct: 133048 aaaatccttagtggcaaaaa 133067
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>gb|AC023829.6| Homo sapiens chromosome 16 clone RP11-578P21, complete sequence
          Length = 161477

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   ttcagcacctttcagaagaa 515
             ||||||||||||||||||||
Sbjct: 52376 ttcagcacctttcagaagaa 52357
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>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence
          Length = 203909

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   ctttggctggaggtcattgc 292
             ||||||||||||||||||||
Sbjct: 89492 ctttggctggaggtcattgc 89473
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>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
              aminoalcoholphosphotransferase, putative growth-regulating
              factor 1, putative GAG-POL precursor, putative GAG-POL
              precursor, putative RIRE2 orf3, putative anthocyanin
              regulatory C1, putative protein T30F21.6, putative copia
              polyprotein, putative copia polyprotein, putative protein
              NP_196765.1, and gb protein genes, complete cds; and
              putative zinc finger protein gene, partial cds
          Length = 144159

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tctgaaggcagatgaaacat 208
              ||||||||||||||||||||
Sbjct: 142178 tctgaaggcagatgaaacat 142159
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>gb|M97764.1|HUMERPALU Homo sapiens erythropoietin gene 5' flank including Alu repeats
          Length = 5169

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 tccagcatgtcccttttctg 557
           ||||||||||||||||||||
Sbjct: 137 tccagcatgtcccttttctg 118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,193,080
Number of Sequences: 3902068
Number of extensions: 5193080
Number of successful extensions: 97874
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97742
Number of HSP's gapped (non-prelim): 131
length of query: 590
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 567
effective length of database: 17,143,297,704
effective search space: 9720249798168
effective search space used: 9720249798168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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