ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63i12 |
|---|---|
| Clone Library Name | barley_pub |
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 59.3 bits (142), Expect = 1e-08 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = -3 Query: 461 SRVTSSRKFRSPNAVVPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEK-HTISPIT 285 SRV S P +P F CPIS E+M DP + + G TYER IE W H P T Sbjct: 259 SRVLDSNGDSRP-ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTT 317 Query: 284 KGMLPSLTIIPSHSLHEAIQQW 219 + + + + P++ L I QW Sbjct: 318 QQKMSTSALTPNYVLRSLISQW 339
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 57.4 bits (137), Expect = 4e-08 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Frame = -3 Query: 461 SRVTSSRKFRSPNAVVPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEK-HTISPIT 285 SR+ S + RSP V+P +F CPIS E+M DP + + G TYER +I+ W + H P + Sbjct: 237 SRIVS--RHRSP--VIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKS 292 Query: 284 KGMLPSLTIIPSHSLHEAIQQWKRSS 207 + L + P++ L I W S+ Sbjct: 293 QETLLHAGLTPNYVLKSLIALWCESN 318
>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) Length = 314 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = -3 Query: 485 LPELENILSRVTSSRKFRSPNAVVPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEK 306 L +++ + S+V RK R +P + IS E+M +PC+ G TY+R+ IE ++ Sbjct: 219 LADMDELFSQVDEKRKKRD----IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 274 Query: 305 -HTISPITKGMLPSLTIIPSHSLHEAI 228 P+T+ L +IP+ ++ E I Sbjct: 275 VGHFDPVTRSPLTQDQLIPNLAMKEVI 301
>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) (CLL-associated antigen KW-8) (Antigen NY-C Length = 303 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = -3 Query: 485 LPELENILSRVTSSRKFRSPNAVVPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEK 306 + +++ + S+V RK R +P + IS E+M +PC+ G TY+R+ IE ++ Sbjct: 208 MADMDELFSQVDEKRKKRD----IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 263 Query: 305 -HTISPITKGMLPSLTIIPSHSLHEAI 228 P+T+ L +IP+ ++ E I Sbjct: 264 VGHFDPVTRSPLTQEQLIPNLAMKEVI 290
>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) Length = 304 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = -3 Query: 485 LPELENILSRVTSSRKFRSPNAVVPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEK 306 + +++ + S+V RK R +P + IS E+M +PC+ G TY+R+ IE ++ Sbjct: 209 MADMDELFSQVDEKRKKRD----IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 264 Query: 305 -HTISPITKGMLPSLTIIPSHSLHEAI 228 P+T+ L +IP+ ++ E I Sbjct: 265 VGHFDPVTRSPLTQEQLIPNLAMKEVI 291
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 38.5 bits (88), Expect = 0.017 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = -3 Query: 416 VPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEKHTISPITKGMLPSLTIIPSHSLH 237 VP F PI IM DP GH +R IE +P + L + P L Sbjct: 906 VPEEFKDPIMDAIMVDPVKLPSGHVMDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELK 965 Query: 236 EAIQQW---KRSSR 204 IQ+W KR+S+ Sbjct: 966 AKIQEWICQKRNSK 979
>PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Neuronal| differentiation-related gene protein) Length = 504 Score = 37.7 bits (86), Expect = 0.030 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 401 ICPISQEIMDDPCVA-ADGHTYERRAIEAWFEKHTISPITKGMLPSLTIIPSHSLH 237 IC IS E+ + PCV+ H YERR IE + ++ PI L +I H Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAH 59
>PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear| matrix protein 200) (Nuclear matrix protein SNEV) Length = 504 Score = 37.7 bits (86), Expect = 0.030 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 401 ICPISQEIMDDPCVA-ADGHTYERRAIEAWFEKHTISPITKGMLPSLTIIPSHSLH 237 IC IS E+ + PCV+ H YERR IE + ++ PI L +I H Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAH 59
>PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear| matrix protein 200) (hPso4) Length = 504 Score = 37.7 bits (86), Expect = 0.030 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 401 ICPISQEIMDDPCVA-ADGHTYERRAIEAWFEKHTISPITKGMLPSLTIIPSHSLH 237 IC IS E+ + PCV+ H YERR IE + ++ PI L +I H Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAH 59
>PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog)| Length = 505 Score = 37.4 bits (85), Expect = 0.039 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 401 ICPISQEIMDDPCVA-ADGHTYERRAIEAWFEKHTISPITKGMLPSLTIIPSHSLH 237 IC IS E+ + PCV+ H YERR IE + ++ P+ L +I H Sbjct: 4 ICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAH 59
>PRP19_CAEEL (Q10051) PRP19/PSO4 homolog| Length = 492 Score = 35.8 bits (81), Expect = 0.11 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 404 FICPISQEIMDDPCVA-ADGHTYERRAIEAWFEKHTISPITKGML 273 F+C IS E+ +DP V+ GH ++RR I + ++ PI+ G L Sbjct: 3 FVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGEL 47
>YT73_CAEEL (Q11087) Hypothetical protein C01C10.3| Length = 391 Score = 32.7 bits (73), Expect = 0.96 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 647 ILSAEEAIRKGTFPDILDISLNDWPIAEAXMLA 549 I+ A RKG PDI D+ + DW EA A Sbjct: 269 IIDATIGYRKGAVPDICDVMMGDWESVEASQFA 301
>YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in chromosome III| Length = 160 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Frame = -3 Query: 404 FICPISQEIMDDPCVAADGHTYERRAIEAWF---------EKHTISPITKGMLPSLTIIP 252 F C + + +PC+ GH+Y R IE+ HT +PI L SLT+ Sbjct: 6 FCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCRAHTGNPIRNRQLESLTMSY 65 Query: 251 SHSLHEAIQQWKR 213 S + + + ++R Sbjct: 66 VSSRNISTEYYER 78
>PPIL2_NEUCR (Q7RXA6) Peptidyl-prolyl cis-trans isomerase-like 2 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-60) (Cyclophilin-like protein Cyp-60) Length = 597 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 416 VPSHFICPISQEIMDDPCVAADGHTYERRAIEAWFEKHTISPITKGMLPSLTII 255 +P +F C S + +P DG ++ I +W EKH +P+T L + +I Sbjct: 43 LPFNF-CAASLQPFKNPVCTPDGTIFDVEVIGSWLEKHKTNPVTGEPLSAKDLI 95
>ATL4E_ARATH (Q9SN28) RING-H2 finger protein ATL4E| Length = 236 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -3 Query: 350 GHTYERRAIEAWFEKHTISPITK-GMLPSLTIIPSHSLHEAIQQWKRSS 207 GHT+ I+ W HT P+ + ++P ++ SH E + + S+ Sbjct: 131 GHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSN 179
>CP52G_CANTR (P30609) Cytochrome P450 52A7 (EC 1.14.14.-) (CYPLIIA7)| (Alkane-inducible P450-ALK4) Length = 507 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +3 Query: 480 WKHLLLEIRPVPASQRRTVQPQFCQHLRLSDWPIIQRYVEDIRK 611 WKH +RP A ++ + P H + +P QR+V DI++ Sbjct: 135 WKHSRAMLRPQFAREQLPMSPSLEPHFNVKAYPQEQRWVFDIQE 178
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 29.6 bits (65), Expect = 8.1 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +2 Query: 491 LARDQACPCISAPYSAAPVLPASXPQRLANHSEICRGYQEMCPFGWPLLR 640 L R +CP + AA PAS P+R+ + +E+ +G ++ G P LR Sbjct: 512 LERMLSCPVRLSEGPAALAGPASPPRRVTSFAELAKGRKKAAGSGSPPLR 561
>ATL4F_ARATH (Q9SN27) RING-H2 finger protein ATL4F| Length = 225 Score = 29.6 bits (65), Expect = 8.1 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -3 Query: 350 GHTYERRAIEAWFEKHTISPITK-GMLPSLTIIPSHSLHEAI 228 GHT+ I+ W HT P+ + ++P ++ SH E + Sbjct: 117 GHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIV 158 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,265,477 Number of Sequences: 219361 Number of extensions: 1918087 Number of successful extensions: 5272 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5266 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
