>ref|XM_464669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2610

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 349  ccatcagcagcaacacacggatcgtccattatctcctgcgatatagggcagatgaagtgg 408
            ||||||||||||||| | ||||| | ||||| |||||||  |||||||||||||||||||
Sbjct: 2450 ccatcagcagcaacataaggatcattcattacctcctgcattatagggcagatgaagtgg 2391

                     
Query: 409  cttggcaca 417
            |||||||||
Sbjct: 2390 cttggcaca 2382

>gb|AY106098.1| Zea mays PCO073295 mRNA sequence
          Length = 523

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 108/132 (81%)
 Strand = Plus / Minus

                                                                       
Query: 451 gtaaccctgcttagaatattttcaagctctggaagcacctcttgctcgagatcaggcctg 510
           ||||||||||| || |||||||| ||||||||||||||| ||  ||| || | ||| |||
Sbjct: 157 gtaaccctgctcaggatattttcgagctctggaagcaccactgactcaaggttaggtctg 98

                                                                       
Query: 511 tccctgcatctcagcgccgtacagtgcagccccagttttgccagcatctncgcctcagcg 570
           ||||||||| | |  || |||||   || ||| |||||||||| |||||  |||||||| 
Sbjct: 97  tccctgcattttaaggcagtacaccacaacccaagttttgccaacatctcagcctcagca 38

                       
Query: 571 attggccaatca 582
           ||||||||||||
Sbjct: 37  attggccaatca 26



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                       
Query: 289 attggggagatcgtgtgtttctcgaaccaagcttcgatcgcccttcgctcgtaggtatga 348
           |||||||| ||| ||||||| |||| |||||||| ||| |||||  | || ||||| || 
Sbjct: 313 attggggatatcttgtgtttttcgagccaagctttgattgccctgtgttcataggtgtgc 254

                                                                       
Query: 349 ccatcagcagcaacacacggatcgtccattatctcctgcgatatagggcagatgaagtgg 408
           ||||| ||||||||  | ||||  ||||||| ||||||| |||| || |||| |||||||
Sbjct: 253 ccatctgcagcaacgtaaggattttccattacctcctgcaatatcggacagaagaagtgg 194

                
Query: 409 cttgg 413
           |||||
Sbjct: 193 cttgg 189



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 216 cttccattgctggatcgcttcatgcaaggaatggctgggaattatgg 262
           |||||||||||| || ||| |||||||||||||| ||||||||||||
Sbjct: 386 cttccattgctgtattgctgcatgcaaggaatggttgggaattatgg 340

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 383      cctgcgatatagggcagatgaagtggcttggcacaactgcgtttggact 431
                ||||| |||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 21924026 cctgcaatattgggcagatgaagtggctcggcacagctgcgtttggact 21924074



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                            
Query: 302      tgtgtttctcgaaccaagcttcgatcgcccttcgctcgtaggtatgaccatcagcagcaa 361
                ||||||||| || ||||||||  || |||||  |||||||||| || |||||||||||||
Sbjct: 21923864 tgtgtttcttgagccaagcttttattgccctgtgctcgtaggtgtgcccatcagcagcaa 21923923

                                          
Query: 362      cacacggatcgtccattatctcctgc 387
                || | || || ||||||| |||||||
Sbjct: 21923924 cataagggtcatccattacctcctgc 21923949



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 546      ttttgccagcatctncgcctcagcgattggccaatca 582
                ||||||||  ||||  |||||||||||||||||||||
Sbjct: 21924189 ttttgccaagatctctgcctcagcgattggccaatca 21924225



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 217      ttccattgctggatcgcttcatgcaaggaatggctgggaattatgg 262
                |||||||| || |||||  || ||||||||||| ||||||||||||
Sbjct: 21923779 ttccattgttgtatcgccacacgcaaggaatggttgggaattatgg 21923824

>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0006A22
          Length = 190690

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                               
Query: 383    cctgcgatatagggcagatgaagtggcttggcacaactgcgtttggact 431
              ||||| |||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 146511 cctgcaatattgggcagatgaagtggctcggcacagctgcgtttggact 146559



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                          
Query: 302    tgtgtttctcgaaccaagcttcgatcgcccttcgctcgtaggtatgaccatcagcagcaa 361
              ||||||||| || ||||||||  || |||||  |||||||||| || |||||||||||||
Sbjct: 146349 tgtgtttcttgagccaagcttttattgccctgtgctcgtaggtgtgcccatcagcagcaa 146408

                                        
Query: 362    cacacggatcgtccattatctcctgc 387
              || | || || ||||||| |||||||
Sbjct: 146409 cataagggtcatccattacctcctgc 146434



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 546    ttttgccagcatctncgcctcagcgattggccaatca 582
              ||||||||  ||||  |||||||||||||||||||||
Sbjct: 146674 ttttgccaagatctctgcctcagcgattggccaatca 146710



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 217    ttccattgctggatcgcttcatgcaaggaatggctgggaattatgg 262
              |||||||| || |||||  || ||||||||||| ||||||||||||
Sbjct: 146264 ttccattgttgtatcgccacacgcaaggaatggttgggaattatgg 146309

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 390     tatagggcagatgaagtggcttggcaca 417
               ||||||||||||||||||||||||||||
Sbjct: 6621769 tatagggcagatgaagtggcttggcaca 6621742

>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 390   tatagggcagatgaagtggcttggcaca 417
             ||||||||||||||||||||||||||||
Sbjct: 56144 tatagggcagatgaagtggcttggcaca 56117

>emb|AL928850.5| Mouse DNA sequence from clone RP23-260B13 on chromosome 2, complete
             sequence
          Length = 166560

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 469   ttttcaagctctggaagcacctct 492
             ||||||||||||||||||||||||
Sbjct: 55486 ttttcaagctctggaagcacctct 55463

>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 471   ttcaagctctggaagcacctc 491
             |||||||||||||||||||||
Sbjct: 42650 ttcaagctctggaagcacctc 42630

>gb|AE014192.1| Streptococcus agalactiae 2603V/R section 2 of 100 of the complete
             genome
          Length = 22135

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 471   ttcaagctctggaagcacctc 491
             |||||||||||||||||||||
Sbjct: 21638 ttcaagctctggaagcacctc 21618

>emb|AL766843.1|SAG766843 Streptococcus agalactiae NEM316 complete genome, segment 1
          Length = 143050

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 471   ttcaagctctggaagcacctc 491
             |||||||||||||||||||||
Sbjct: 42735 ttcaagctctggaagcacctc 42715

>emb|AL596382.12| Mouse DNA sequence from clone RP23-337J7 on chromosome 11, complete
              sequence
          Length = 225083

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 189    aggaaacaactgtcatctaga 209
              |||||||||||||||||||||
Sbjct: 104641 aggaaacaactgtcatctaga 104621

>gb|AE012552.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 460
           of 460 of the complete genome
          Length = 6799

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 224 gctggatcgcttcatgcaagg 244
           |||||||||||||||||||||
Sbjct: 637 gctggatcgcttcatgcaagg 657

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 224     gctggatcgcttcatgcaagg 244
               |||||||||||||||||||||
Sbjct: 5142547 gctggatcgcttcatgcaagg 5142567

>gb|AF463762.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence
          Length = 14207

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   aggaaacaactgtcatctaga 209
             |||||||||||||||||||||
Sbjct: 10914 aggaaacaactgtcatctaga 10894

>emb|AL929220.13| Zebrafish DNA sequence from clone DKEY-65B13 in linkage group 20,
             complete sequence
          Length = 227539

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 455   ccctgcttagaatattttcaa 475
             |||||||||||||||||||||
Sbjct: 71239 ccctgcttagaatattttcaa 71219

>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 232     gcttcatgcaaggaatggctggga 255
               |||||||||||||||| |||||||
Sbjct: 1152914 gcttcatgcaaggaatcgctggga 1152891

>ref|XM_544191.2| PREDICTED: Canis familiaris similar to TSPY-like 5 (LOC487063),
           mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 503 caggcctgtccctgcatctc 522
           ||||||||||||||||||||
Sbjct: 475 caggcctgtccctgcatctc 456

>ref|XM_571689.1| Cryptococcus neoformans var. neoformans JEC21 yippee-like
           (CNF03960) partial mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 gcttcatgcaaggaatggctggga 255
           |||||||||||||||| |||||||
Sbjct: 440 gcttcatgcaaggaatcgctggga 463

>emb|Z81138.1|CEW05B2 Caenorhabditis elegans Cosmid W05B2, complete sequence
          Length = 35530

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    taaagaactaaatcttcctg 103
             ||||||||||||||||||||
Sbjct: 29873 taaagaactaaatcttcctg 29892

>gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence
          Length = 171421

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 100    cctgctactaagatatacaactat 123
              ||||| ||||||||||||||||||
Sbjct: 109462 cctgcaactaagatatacaactat 109485

>emb|AL731825.1|BTPBTOXIS Bacillus thuringiensis subsp. israelensis plasmid pBtoxis
          Length = 127923

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  caaaaatcatctagatttga 187
            ||||||||||||||||||||
Sbjct: 1073 caaaaatcatctagatttga 1092

>emb|AJ719485.1| Gallus gallus mRNA for hypothetical protein, clone 2m7
          Length = 2823

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 530  tacagtgcagccccagtttt 549
            ||||||||||||||||||||
Sbjct: 2196 tacagtgcagccccagtttt 2177

>ref|NM_001007982.1| Gallus gallus S-phase kinase-associated protein 2 (p45) (SKP2), mRNA
          Length = 2823

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 530  tacagtgcagccccagtttt 549
            ||||||||||||||||||||
Sbjct: 2196 tacagtgcagccccagtttt 2177

>emb|BX571839.8| Zebrafish DNA sequence from clone DKEY-259P7 in linkage group 16,
             complete sequence
          Length = 168648

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tttcaagctctggaagcacc 489
             ||||||||||||||||||||
Sbjct: 20282 tttcaagctctggaagcacc 20263

>gb|U53332.2| Caenorhabditis elegans cosmid F59G1, complete sequence
          Length = 25643

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 161  atttaaccaaaaatcatctagatt 184
            |||||||||||||||| |||||||
Sbjct: 3465 atttaaccaaaaatcaactagatt 3442

>ref|NM_067008.3| Caenorhabditis elegans COLlagen family member (col-93) (col-93)
           mRNA, complete cds
          Length = 1012

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 84  taaagaactaaatcttcctg 103
           ||||||||||||||||||||
Sbjct: 964 taaagaactaaatcttcctg 945

>gb|AC153071.3| Equus caballus clone CH241-77F8, complete sequence
          Length = 245146

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 100   cctgctactaagatatacaactat 123
             ||||| ||||||||||||||||||
Sbjct: 96522 cctgcaactaagatatacaactat 96545

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     atgaccatcagcagcaacac 364
               ||||||||||||||||||||
Sbjct: 1692151 atgaccatcagcagcaacac 1692132

>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 100     cctgctactaagatatacaactat 123
               ||||| ||||||||||||||||||
Sbjct: 1122930 cctgcaactaagatatacaactat 1122953



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 100   cctgctactaagatatacaactat 123
             ||||| ||||||||||||||||||
Sbjct: 96522 cctgcaactaagatatacaactat 96545

>emb|AJ296631.1|BTH296631 Bacillus thuringiensis subsp. israelensis pBtoxis plasmid, subclone
           pTOX3b
          Length = 1050

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 caaaaatcatctagatttga 187
           ||||||||||||||||||||
Sbjct: 460 caaaaatcatctagatttga 441

>emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chromosome 2, complete
             sequence
          Length = 207100

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 577   caatcattcagagatatgtc 596
             ||||||||||||||||||||
Sbjct: 16238 caatcattcagagatatgtc 16219


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,742,109
Number of Sequences: 3902068
Number of extensions: 4742109
Number of successful extensions: 79045
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78875
Number of HSP's gapped (non-prelim): 170
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)