ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63i09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 146 1e-54
2RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 115 1e-39
3RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 114 1e-39
4RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 115 1e-38
5RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 125 5e-29
6RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 125 8e-29
7RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 122 5e-28
8RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 118 1e-26
9RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 115 5e-26
10RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 111 9e-25
11RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 111 9e-25
12RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 111 1e-24
13RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 108 8e-24
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 107 1e-23
15RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 74 2e-13
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 56 6e-08
17RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a... 48 1e-05
18GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre... 31 2.1
19EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-... 29 6.0
20TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription... 29 7.8

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  146 bits (368), Expect(2) = 1e-54
 Identities = 72/73 (98%), Positives = 72/73 (98%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           GIENIGKRLVNSRDGPVTFEQPKMTV KLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD
Sbjct: 355 GIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 414

Query: 314 ANQDAMKTGSFYG 276
           ANQDAMKTGSFYG
Sbjct: 415 ANQDAMKTGSFYG 427



 Score = 86.3 bits (212), Expect(2) = 1e-54
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -2

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  115 bits (289), Expect(2) = 1e-39
 Identities = 54/73 (73%), Positives = 65/73 (89%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G++ IGK+LVNS++GP +FEQPKMT+ KLL YG MLVQEQ+NVKRVQLAD YMS+AALGD
Sbjct: 365 GVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGD 424

Query: 314 ANQDAMKTGSFYG 276
           AN DA+K G+FYG
Sbjct: 425 ANNDAIKRGTFYG 437



 Score = 66.6 bits (161), Expect(2) = 1e-39
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -2

Query: 231 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  114 bits (286), Expect(2) = 1e-39
 Identities = 54/73 (73%), Positives = 64/73 (87%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G+E IGKRLVNSR+GP  FEQP+MT  KL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGD
Sbjct: 365 GVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGD 424

Query: 314 ANQDAMKTGSFYG 276
           AN DA+  G+FYG
Sbjct: 425 ANADAIGRGTFYG 437



 Score = 67.8 bits (164), Expect(2) = 1e-39
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  115 bits (288), Expect(2) = 1e-38
 Identities = 52/73 (71%), Positives = 66/73 (90%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G++N+GK+LVNS+DGP  FEQP+MT+ KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGD
Sbjct: 363 GVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGD 422

Query: 314 ANQDAMKTGSFYG 276
           AN+DA+  G+F+G
Sbjct: 423 ANKDAIDRGTFFG 435



 Score = 63.9 bits (154), Expect(2) = 1e-38
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -2

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 121
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  125 bits (315), Expect = 5e-29
 Identities = 58/73 (79%), Positives = 67/73 (91%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G+ENI KRLVNSR+GP TF+QPKMT+ KL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG 
Sbjct: 352 GVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQ 411

Query: 314 ANQDAMKTGSFYG 276
           AN DAMKTG+FYG
Sbjct: 412 ANDDAMKTGAFYG 424



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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  125 bits (313), Expect = 8e-29
 Identities = 58/73 (79%), Positives = 68/73 (93%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G+ENIGKRLVNSR+GP  FEQPKMT+ KL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGD
Sbjct: 355 GVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGD 414

Query: 314 ANQDAMKTGSFYG 276
           AN DAMKTGSFYG
Sbjct: 415 ANSDAMKTGSFYG 427



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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  122 bits (306), Expect = 5e-28
 Identities = 56/73 (76%), Positives = 68/73 (93%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G+++IGK+LVNS++GP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGD
Sbjct: 365 GVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGD 424

Query: 314 ANQDAMKTGSFYG 276
           AN DAM TG+FYG
Sbjct: 425 ANSDAMNTGTFYG 437



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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  118 bits (295), Expect = 1e-26
 Identities = 53/72 (73%), Positives = 67/72 (93%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G+ENI ++LVNS++GP TFEQPK+T+ KLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+
Sbjct: 361 GVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGE 420

Query: 314 ANQDAMKTGSFY 279
           AN+DAMKTGSF+
Sbjct: 421 ANEDAMKTGSFF 432



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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  115 bits (289), Expect = 5e-26
 Identities = 53/71 (74%), Positives = 66/71 (92%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G++ IGK+LVNS++GP TFEQPKMT+ KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGD
Sbjct: 365 GVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGD 424

Query: 314 ANQDAMKTGSF 282
           ANQDA+K G+F
Sbjct: 425 ANQDAIKRGTF 435



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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  111 bits (278), Expect = 9e-25
 Identities = 53/72 (73%), Positives = 62/72 (86%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           GIE IG +L+NS DGP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGD
Sbjct: 369 GIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGD 428

Query: 314 ANQDAMKTGSFY 279
           AN DA+  GSF+
Sbjct: 429 ANADAINNGSFF 440



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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  111 bits (278), Expect = 9e-25
 Identities = 54/71 (76%), Positives = 63/71 (88%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           GIE IG +L+NS DGP TFEQPKMTV KLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGD
Sbjct: 369 GIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGD 428

Query: 314 ANQDAMKTGSF 282
           AN DA+ TG+F
Sbjct: 429 ANADAINTGNF 439



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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  111 bits (277), Expect = 1e-24
 Identities = 53/69 (76%), Positives = 63/69 (91%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           GIE IG++L+NSRDGP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGD
Sbjct: 364 GIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGD 423

Query: 314 ANQDAMKTG 288
           AN DA+ TG
Sbjct: 424 ANADAINTG 432



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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  108 bits (270), Expect = 8e-24
 Identities = 48/72 (66%), Positives = 67/72 (93%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G++  GK+LVNS++GP TF+QPKM++ KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+
Sbjct: 367 GVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGN 426

Query: 314 ANQDAMKTGSFY 279
           AN+DA+K+GSF+
Sbjct: 427 ANEDAIKSGSFF 438



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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  107 bits (268), Expect = 1e-23
 Identities = 48/72 (66%), Positives = 66/72 (91%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315
           G++++GK+LVNS++GP TF+QPKMT+ KLL Y  MLVQEQ+NVKRVQLAD Y+++AALG+
Sbjct: 369 GVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGN 428

Query: 314 ANQDAMKTGSFY 279
           AN+DA+K+GSF+
Sbjct: 429 ANEDAIKSGSFF 440



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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 42/48 (87%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQL 351
           G+E IG+ LVNS++ P TF+QPKMT+ KLLEYG+MLV EQ+NVKRV+L
Sbjct: 362 GVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409



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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 29/58 (50%), Positives = 40/58 (68%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 321
           G++ IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 338 GVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394



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>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -3

Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTY 339
           G EN+  R+VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 238 GYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289



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>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 343 VSASCTRLTLSCSWTSMCPYSSSXSTVIFGCSKVT 447
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453



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>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -3

Query: 446 VTFEQPKMTVX-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 291
           VTF    +T   K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 290 GSFYG*KILHTHPPSLAA 237
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355



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>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 288 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 130
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,044,366
Number of Sequences: 219361
Number of extensions: 1309977
Number of successful extensions: 3599
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3598
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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