ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63i09 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 146 bits (368), Expect(2) = 1e-54 Identities = 72/73 (98%), Positives = 72/73 (98%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 GIENIGKRLVNSRDGPVTFEQPKMTV KLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD Sbjct: 355 GIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 414 Query: 314 ANQDAMKTGSFYG 276 ANQDAMKTGSFYG Sbjct: 415 ANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 1e-54 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -2 Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 115 bits (289), Expect(2) = 1e-39 Identities = 54/73 (73%), Positives = 65/73 (89%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G++ IGK+LVNS++GP +FEQPKMT+ KLL YG MLVQEQ+NVKRVQLAD YMS+AALGD Sbjct: 365 GVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGD 424 Query: 314 ANQDAMKTGSFYG 276 AN DA+K G+FYG Sbjct: 425 ANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 1e-39 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -2 Query: 231 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 114 bits (286), Expect(2) = 1e-39 Identities = 54/73 (73%), Positives = 64/73 (87%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G+E IGKRLVNSR+GP FEQP+MT KL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGD Sbjct: 365 GVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGD 424 Query: 314 ANQDAMKTGSFYG 276 AN DA+ G+FYG Sbjct: 425 ANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 1e-39 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -2 Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 115 bits (288), Expect(2) = 1e-38 Identities = 52/73 (71%), Positives = 66/73 (90%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G++N+GK+LVNS+DGP FEQP+MT+ KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGD Sbjct: 363 GVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGD 422 Query: 314 ANQDAMKTGSFYG 276 AN+DA+ G+F+G Sbjct: 423 ANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 1e-38 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -2 Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 121 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 125 bits (315), Expect = 5e-29 Identities = 58/73 (79%), Positives = 67/73 (91%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G+ENI KRLVNSR+GP TF+QPKMT+ KL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG Sbjct: 352 GVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQ 411 Query: 314 ANQDAMKTGSFYG 276 AN DAMKTG+FYG Sbjct: 412 ANDDAMKTGAFYG 424
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 125 bits (313), Expect = 8e-29 Identities = 58/73 (79%), Positives = 68/73 (93%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G+ENIGKRLVNSR+GP FEQPKMT+ KL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGD Sbjct: 355 GVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGD 414 Query: 314 ANQDAMKTGSFYG 276 AN DAMKTGSFYG Sbjct: 415 ANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 122 bits (306), Expect = 5e-28 Identities = 56/73 (76%), Positives = 68/73 (93%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G+++IGK+LVNS++GP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGD Sbjct: 365 GVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGD 424 Query: 314 ANQDAMKTGSFYG 276 AN DAM TG+FYG Sbjct: 425 ANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 118 bits (295), Expect = 1e-26 Identities = 53/72 (73%), Positives = 67/72 (93%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G+ENI ++LVNS++GP TFEQPK+T+ KLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+ Sbjct: 361 GVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGE 420 Query: 314 ANQDAMKTGSFY 279 AN+DAMKTGSF+ Sbjct: 421 ANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 115 bits (289), Expect = 5e-26 Identities = 53/71 (74%), Positives = 66/71 (92%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G++ IGK+LVNS++GP TFEQPKMT+ KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGD Sbjct: 365 GVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGD 424 Query: 314 ANQDAMKTGSF 282 ANQDA+K G+F Sbjct: 425 ANQDAIKRGTF 435
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 111 bits (278), Expect = 9e-25 Identities = 53/72 (73%), Positives = 62/72 (86%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 GIE IG +L+NS DGP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGD Sbjct: 369 GIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGD 428 Query: 314 ANQDAMKTGSFY 279 AN DA+ GSF+ Sbjct: 429 ANADAINNGSFF 440
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 111 bits (278), Expect = 9e-25 Identities = 54/71 (76%), Positives = 63/71 (88%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 GIE IG +L+NS DGP TFEQPKMTV KLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGD Sbjct: 369 GIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGD 428 Query: 314 ANQDAMKTGSF 282 AN DA+ TG+F Sbjct: 429 ANADAINTGNF 439
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 111 bits (277), Expect = 1e-24 Identities = 53/69 (76%), Positives = 63/69 (91%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 GIE IG++L+NSRDGP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGD Sbjct: 364 GIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGD 423 Query: 314 ANQDAMKTG 288 AN DA+ TG Sbjct: 424 ANADAINTG 432
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 108 bits (270), Expect = 8e-24 Identities = 48/72 (66%), Positives = 67/72 (93%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G++ GK+LVNS++GP TF+QPKM++ KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+ Sbjct: 367 GVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGN 426 Query: 314 ANQDAMKTGSFY 279 AN+DA+K+GSF+ Sbjct: 427 ANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 107 bits (268), Expect = 1e-23 Identities = 48/72 (66%), Positives = 66/72 (91%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGD 315 G++++GK+LVNS++GP TF+QPKMT+ KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+ Sbjct: 369 GVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGN 428 Query: 314 ANQDAMKTGSFY 279 AN+DA+K+GSF+ Sbjct: 429 ANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 74.3 bits (181), Expect = 2e-13 Identities = 33/48 (68%), Positives = 42/48 (87%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQL 351 G+E IG+ LVNS++ P TF+QPKMT+ KLLEYG+MLV EQ+NVKRV+L Sbjct: 362 GVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 55.8 bits (133), Expect = 6e-08 Identities = 29/58 (50%), Positives = 40/58 (68%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 321 G++ IG++LVN+R V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 338 GVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/52 (40%), Positives = 32/52 (61%) Frame = -3 Query: 494 GIENIGKRLVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTY 339 G EN+ R+VNS +GP F++P T+ L+E + +V EQ ++ QL D Y Sbjct: 238 GYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 343 VSASCTRLTLSCSWTSMCPYSSSXSTVIFGCSKVT 447 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -3 Query: 446 VTFEQPKMTVX-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 291 VTF +T K +E H +QE NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 290 GSFYG*KILHTHPPSLAA 237 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -2 Query: 288 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 130 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,044,366 Number of Sequences: 219361 Number of extensions: 1309977 Number of successful extensions: 3599 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3598 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
