ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63i07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185332.2| Oryza sativa (japonica cultivar-group), mRNA 206 4e-50
2gb|AF149812.1| Oryza sativa predicted protein gene, complete cds 206 4e-50
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 206 4e-50
4dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 206 4e-50
5dbj|AK111784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 4e-50
6gb|AY596522.1| Saccharum officinarum clone SCQGLR1019B07, comple... 149 9e-33
7gb|AY105042.1| Zea mays PCO098401 mRNA sequence 135 1e-28
8gb|BT017404.1| Zea mays clone EL01N0329H05.c mRNA sequence 111 2e-21
9ref|NM_112160.2| Arabidopsis thaliana unknown protein AT3G13200 ... 50 0.006
10gb|AF083766.1| Arabidopsis thaliana clone sps694 unknown mRNA 50 0.006
11gb|AY072487.1| Arabidopsis thaliana unknown protein (At3g13220; ... 50 0.006
12gb|AY054673.1| Arabidopsis thaliana Unknown protein (At3g13220; ... 50 0.006
13gb|AY086234.1| Arabidopsis thaliana clone 22807 mRNA, complete s... 50 0.006
14dbj|AP000375.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 50 0.006
15dbj|AP006399.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.023
16gb|AC125177.4| Mus musculus BAC clone RP23-315H8 from chromosome... 42 1.4
17gb|AC118474.10| Mus musculus chromosome 8, clone RP23-288O12, co... 42 1.4
18emb|AL136980.5| Human DNA sequence from clone RP11-207C16 on chr... 42 1.4
19gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8,... 42 1.4
20dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.4
21gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 42 1.4
22emb|BX823170.1|CNS0A5W9 Arabidopsis thaliana Full-length cDNA Co... 42 1.4
23ref|XM_235542.3| PREDICTED: Rattus norvegicus similar to leucine... 42 1.4
24gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.4
25dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 42 1.4
26gb|AY216005.1| Wedelia tegetis chloroplast tRNA-Thr (trnT) gene,... 40 5.6
27gb|AY215934.1| Hymenopappus filifolius var. filifolius chloropla... 40 5.6
28gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome... 40 5.6
29ref|XM_385684.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 5.6
30gb|AC138087.17| Medicago truncatula clone mth2-22p8, complete se... 40 5.6
31gb|AC098799.2| Homo sapiens BAC clone RP11-642E20 from 4, comple... 40 5.6
32emb|CR391995.4| Zebrafish DNA sequence from clone CH211-229I10, ... 40 5.6
33emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chrom... 40 5.6
34gb|AC154785.2| Mus musculus BAC clone RP23-92M20 from chromosome... 40 5.6
35gb|AY093642.1| Acipenser oxyrhynchus oxyrhynchus clone AoxD172 m... 40 5.6
36gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, co... 40 5.6
37dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.6
38gb|AC123705.12| Mus musculus chromosome 12, clone RP23-355K21, c... 40 5.6 
>ref|NM_185332.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1152

 Score =  206 bits (104), Expect = 4e-50
 Identities = 119/124 (95%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcagcatcatttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtc 357
           ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 802 gcagcatcacttcatgtacctctgcagaaacttacggtggaaatcacttctgatagtgtc 743

                                                                       
Query: 358 gttgatgaaccgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 417
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gttgatgaaacgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 683

               
Query: 418 atca 421
           ||||
Sbjct: 682 atca 679
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>gb|AF149812.1| Oryza sativa predicted protein gene, complete cds
          Length = 1250

 Score =  206 bits (104), Expect = 4e-50
 Identities = 119/124 (95%)
 Strand = Plus / Plus

                                                                       
Query: 298 gcagcatcatttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtc 357
           ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 823 gcagcatcacttcatgtacctctgcagaaacttacggtggaaatcacttctgatagtgtc 882

                                                                       
Query: 358 gttgatgaaccgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 417
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gttgatgaaacgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 942

               
Query: 418 atca 421
           ||||
Sbjct: 943 atca 946
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  206 bits (104), Expect = 4e-50
 Identities = 119/124 (95%)
 Strand = Plus / Plus

                                                                          
Query: 298    gcagcatcatttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtc 357
              ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 412669 gcagcatcacttcatgtacctctgcagaaacttacggtggaaatcacttctgatagtgtc 412728

                                                                          
Query: 358    gttgatgaaccgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 417
              ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412729 gttgatgaaacgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 412788

                  
Query: 418    atca 421
              ||||
Sbjct: 412789 atca 412792
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0644B06
          Length = 194509

 Score =  206 bits (104), Expect = 4e-50
 Identities = 119/124 (95%)
 Strand = Plus / Plus

                                                                          
Query: 298    gcagcatcatttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtc 357
              ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 122622 gcagcatcacttcatgtacctctgcagaaacttacggtggaaatcacttctgatagtgtc 122681

                                                                          
Query: 358    gttgatgaaccgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 417
              ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122682 gttgatgaaacgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 122741

                  
Query: 418    atca 421
              ||||
Sbjct: 122742 atca 122745
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>dbj|AK111784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086E16, full
           insert sequence
          Length = 1151

 Score =  206 bits (104), Expect = 4e-50
 Identities = 119/124 (95%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcagcatcatttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtc 357
           ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 801 gcagcatcacttcatgtacctctgcagaaacttacggtggaaatcacttctgatagtgtc 742

                                                                       
Query: 358 gttgatgaaccgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 417
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttgatgaaacgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatc 682

               
Query: 418 atca 421
           ||||
Sbjct: 681 atca 678
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>gb|AY596522.1| Saccharum officinarum clone SCQGLR1019B07, complete sequence
          Length = 997

 Score =  149 bits (75), Expect = 9e-33
 Identities = 108/119 (90%)
 Strand = Plus / Minus

                                                                       
Query: 302 catcatttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtcgttg 361
           ||||| ||||||||||| || ||||| || |||||||||||||| |||||||| ||||||
Sbjct: 747 catcacttcatgtacctctgaagaaatttacggtggaaatcactcctgatggtatcgttg 688

                                                                      
Query: 362 atgaaccgtttcggtgtcttggtctctccacgagcctggttcttgaatacaacatcatc 420
           |||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct: 687 atgaaccgtttcggtgtcttggtctctccacgtgcttggttcttgaaaaccacatcatc 629
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>gb|AY105042.1| Zea mays PCO098401 mRNA sequence
          Length = 1154

 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 308 ttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtcgttgatgaac 367
           ||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 839 ttcatgtacctctgaagaaatttacggtggaaatcactcctgatggtgtcgttgatgaac 780

                                                       
Query: 368 cgtttcggtgtcttggtctctccacgagcctggttcttgaatac 411
           ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 779 cgtttcggtgtcttggtctctcctcgtgcttgattcttgaatac 736
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>gb|BT017404.1| Zea mays clone EL01N0329H05.c mRNA sequence
          Length = 866

 Score =  111 bits (56), Expect = 2e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                       
Query: 308 ttcatgtacctatgcagaaacttgcggtggaaatcacttctgatggtgtcgttgatgaac 367
           ||||||||||| || ||||| || ||| |||||||||| ||||||| |||||||||||||
Sbjct: 674 ttcatgtacctctgaagaaatttacgggggaaatcactcctgatggggtcgttgatgaac 615

                                                       
Query: 368 cgtttcggtgtcttggtctctccacgagcctggttcttgaatac 411
           |||||||| |||||||||||||| || || || |||||||||||
Sbjct: 614 cgtttcggggtcttggtctctcctcgtgcttgattcttgaatac 571
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>ref|NM_112160.2| Arabidopsis thaliana unknown protein AT3G13200 mRNA, complete cds
          Length = 964

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 389 ccacgagcctggttcttgaatacaacatcatca 421
           ||||| |||||||| ||||||||||||||||||
Sbjct: 722 ccacgtgcctggtttttgaatacaacatcatca 690
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>gb|AF083766.1| Arabidopsis thaliana clone sps694 unknown mRNA
          Length = 457

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 389 ccacgagcctggttcttgaatacaacatcatca 421
           ||||| |||||||| ||||||||||||||||||
Sbjct: 206 ccacgtgcctggtttttgaatacaacatcatca 238
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>gb|AY072487.1| Arabidopsis thaliana unknown protein (At3g13220; MJG19.16) mRNA,
           complete cds
          Length = 773

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 389 ccacgagcctggttcttgaatacaacatcatca 421
           ||||| |||||||| ||||||||||||||||||
Sbjct: 608 ccacgtgcctggtttttgaatacaacatcatca 576
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>gb|AY054673.1| Arabidopsis thaliana Unknown protein (At3g13220; MJG19.16) mRNA,
           complete cds
          Length = 943

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 389 ccacgagcctggttcttgaatacaacatcatca 421
           ||||| |||||||| ||||||||||||||||||
Sbjct: 717 ccacgtgcctggtttttgaatacaacatcatca 685
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>gb|AY086234.1| Arabidopsis thaliana clone 22807 mRNA, complete sequence
          Length = 950

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 389 ccacgagcctggttcttgaatacaacatcatca 421
           ||||| |||||||| ||||||||||||||||||
Sbjct: 722 ccacgtgcctggtttttgaatacaacatcatca 690
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>dbj|AP000375.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MJG19
          Length = 62948

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 389   ccacgagcctggttcttgaatacaacatcatca 421
             ||||| |||||||| ||||||||||||||||||
Sbjct: 53257 ccacgtgcctggtttttgaatacaacatcatca 53225
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>dbj|AP006399.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22I23, TM0281a,
             complete sequence
          Length = 20838

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                         
Query: 334   gtggaaatcacttctgatggtgtcgttgatgaaccgtttcggtgtcttggtctctccacg 393
             |||||||||| | |||||||| || || ||||| || ||| ||| |||||  || |||||
Sbjct: 17820 gtggaaatcattcctgatggtatcattaatgaatcgcttcagtgccttggcttcaccacg 17761

                                         
Query: 394   agcctggttcttgaatacaacatcatca 421
              || |||||||| || ||||||||||||
Sbjct: 17760 ggcttggttcttaaacacaacatcatca 17733
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>gb|AC125177.4| Mus musculus BAC clone RP23-315H8 from chromosome 8, complete sequence
          Length = 217567

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    cacagcaaagcatcagtaata 135
              |||||||||||||||||||||
Sbjct: 148289 cacagcaaagcatcagtaata 148269
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>gb|AC118474.10| Mus musculus chromosome 8, clone RP23-288O12, complete sequence
          Length = 191490

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    cacagcaaagcatcagtaata 135
              |||||||||||||||||||||
Sbjct: 165905 cacagcaaagcatcagtaata 165925
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>emb|AL136980.5| Human DNA sequence from clone RP11-207C16 on chromosome 9p23-24.3
              Contains a novel gene (contains DKFZp434D105, FLJ12580 and
              KIAA1432), a novel gene and the 3' end of a novel gene
              (FLJ23309), complete sequence
          Length = 169562

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 242    agaaacatcacaggctcttcc 262
              |||||||||||||||||||||
Sbjct: 148194 agaaacatcacaggctcttcc 148214
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>gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8, complete sequence
          Length = 172253

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   aacaaagatattacagttatg 216
             |||||||||||||||||||||
Sbjct: 43624 aacaaagatattacagttatg 43644
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 349     gatggtgtcgttgatgaaccgtttc 373
               |||||||||||||||||| ||||||
Sbjct: 1495798 gatggtgtcgttgatgaagcgtttc 1495822
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    acaaagatattacagttatgt 217
              |||||||||||||||||||||
Sbjct: 155014 acaaagatattacagttatgt 154994
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>emb|BX823170.1|CNS0A5W9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB95ZA12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 879

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 389 ccacgagcctggttcttgaatacaacatcatca 421
           ||||| |||||| | ||||||||||||||||||
Sbjct: 701 ccacgtgcctgggttttgaatacaacatcatca 669
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>ref|XM_235542.3| PREDICTED: Rattus norvegicus similar to leucine zipper,
           down-regulated in cancer 1; breast cancer, up-regulated
           1 (predicted) (LOC300114), mRNA
          Length = 2751

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 116 acagcaaagcatcagtaatat 136
           |||||||||||||||||||||
Sbjct: 238 acagcaaagcatcagtaatat 218
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 349     gatggtgtcgttgatgaaccgtttc 373
               |||||||||||||||||| ||||||
Sbjct: 1511311 gatggtgtcgttgatgaagcgtttc 1511335
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
              sequence
          Length = 157927

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    acaaagatattacagttatgt 217
              |||||||||||||||||||||
Sbjct: 111269 acaaagatattacagttatgt 111249
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>gb|AY216005.1| Wedelia tegetis chloroplast tRNA-Thr (trnT) gene, partial
          sequence; trnT-trnL intergenic spacer, complete
          sequence
          Length = 564

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 71 aagaattcaaatagtaaata 90
          ||||||||||||||||||||
Sbjct: 89 aagaattcaaatagtaaata 70
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>gb|AY215934.1| Hymenopappus filifolius var. filifolius chloroplast tRNA-Thr
          (trnT) gene, partial sequence; trnT-trnL intergenic
          spacer, complete sequence
          Length = 577

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 71 aagaattcaaatagtaaata 90
          ||||||||||||||||||||
Sbjct: 89 aagaattcaaatagtaaata 70
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>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence
          Length = 187364

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ctgagtacaccacaagcata 42
              ||||||||||||||||||||
Sbjct: 123109 ctgagtacaccacaagcata 123090
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>ref|XM_385684.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05508.1)
           partial mRNA
          Length = 714

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 389 ccacgagcctggttcttgaatacaacatcatc 420
           |||||||| ||||||||||| || ||||||||
Sbjct: 623 ccacgagcttggttcttgaagaccacatcatc 592
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>gb|AC138087.17| Medicago truncatula clone mth2-22p8, complete sequence
          Length = 130194

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 335   tggaaatcacttctgatggtgtcgttgatgaa 366
             ||||||||| | ||||||||||| ||||||||
Sbjct: 48423 tggaaatcattcctgatggtgtcattgatgaa 48454
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>gb|AC098799.2| Homo sapiens BAC clone RP11-642E20 from 4, complete sequence
          Length = 160712

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gaatacagaaacatcacagg 255
             ||||||||||||||||||||
Sbjct: 85895 gaatacagaaacatcacagg 85876
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>emb|CR391995.4| Zebrafish DNA sequence from clone CH211-229I10, complete sequence
          Length = 134975

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aatagtaaatactagtaata 99
             ||||||||||||||||||||
Sbjct: 93645 aatagtaaatactagtaata 93626
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>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the
            Myo1g gene for myosin 1G, a novel gene, a ribosomal
            protein L21 (Rpl21) pseudogene, the 5' end of a novel
            gene and two CpG islands, complete sequence
          Length = 93553

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 311  atgtacctatgcagaaactt 330
            ||||||||||||||||||||
Sbjct: 6766 atgtacctatgcagaaactt 6785
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>gb|AC154785.2| Mus musculus BAC clone RP23-92M20 from chromosome 12, complete sequence
          Length = 231183

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    atacaagcagtgggttcttt 154
              ||||||||||||||||||||
Sbjct: 148627 atacaagcagtgggttcttt 148646
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>gb|AY093642.1| Acipenser oxyrhynchus oxyrhynchus clone AoxD172 microsatellite
           sequence
          Length = 536

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tgggtctgaaagaattcaaa 81
           ||||||||||||||||||||
Sbjct: 509 tgggtctgaaagaattcaaa 490
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>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence
          Length = 195558

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tgggcagtcacacaaactga 26
             ||||||||||||||||||||
Sbjct: 86141 tgggcagtcacacaaactga 86160
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 361     gatgaaccgtttcggtgtcttggt 384
               ||||| ||||||||||||||||||
Sbjct: 3109436 gatgacccgtttcggtgtcttggt 3109413
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>gb|AC123705.12| Mus musculus chromosome 12, clone RP23-355K21, complete sequence
          Length = 217397

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   cgtacagcagcatcatttca 311
             ||||||||||||||||||||
Sbjct: 55519 cgtacagcagcatcatttca 55538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,907,135
Number of Sequences: 3902068
Number of extensions: 3907135
Number of successful extensions: 73775
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73681
Number of HSP's gapped (non-prelim): 94
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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