ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah63i03 |
|---|---|
| Clone Library Name | barley_pub |
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 33.5 bits (75), Expect = 0.36 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 341 LHPSQKQFAVAHASGDLRMNPCLAFPCLQFQRPQDGSSLKPR 466 +HPS Q ++A G ++ NP + Q+ PQ GS+L PR Sbjct: 737 MHPSMNQSSIAQDRGYMQRNPQMP----QYSSPQPGSALSPR 774
>EX5B_CHLTR (O84645) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1026 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 6 MKAGQVHRQTHTAQSYSHDNS 68 +K+ Q H +TH AQSYSHD S Sbjct: 321 LKSVQQHLKTHCAQSYSHDES 341
>SSPA_STAAR (Q6GI34) Glutamyl endopeptidase precursor (EC 3.4.21.19)| (Staphylococcal serine proteinase) (V8 protease) (V8 proteinase) (Endoproteinase Glu-C) Length = 357 Score = 30.4 bits (67), Expect = 3.0 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 511 LQDHPMYLEKDRQNAARLQRGAILRPLELEAR 416 + +HP + D+Q ++Q+G L+PLE R Sbjct: 35 MDNHPQQTQTDKQQTPKIQKGGNLKPLEQRER 66
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 30.4 bits (67), Expect = 3.0 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -1 Query: 518 APAPRPSHVSGKGSAERSEASKRSHLAAFGTGGTERQGKGSFANRHS 378 AP + S SG GS +RS + RS + G+G GS +RHS Sbjct: 30 APGSQRSRRSGSGS-DRSRSGSRSSRSRSGSGSPRSARSGSAESRHS 75
>TONB_NEIMA (P57003) Protein tonB| Length = 280 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -1 Query: 515 PAPRPSHVSGKGSAERSEAS-KRSHLAAFGTGGTERQGKGSFANRHSHG 372 PA P + S K +E+ K + + GTG E GKGS + HG Sbjct: 141 PAEHPGNASAKADSEQGNGEDKGTGIKGDGTGRGEGSGKGSGGVKGEHG 189
>XYLA_SALTI (Q7C637) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 29.3 bits (64), Expect = 6.8 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 381 LAWATANCFCEGCNLRPGEGAS---DDEIAADLSAVRAIAWRAHHRLG 247 L W TANCF N R G GA+ D E+ + + A A H+LG Sbjct: 137 LLWGTANCF---TNPRYGAGAATNPDPEVFSCAATQVVTAMNATHKLG 181
>POGZ_HUMAN (Q7Z3K3) Pogo transposable element with ZNF domain| Length = 1410 Score = 29.3 bits (64), Expect = 6.8 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 289 R*ISRDFVI*CSLSRTQITSFTETVRCGPCEWRFANEPL 405 R S F + C L + + T +C CEW F +EPL Sbjct: 537 RQFSTPFQLQCHLENVH-SPYESTTKCKICEWAFESEPL 574
>TONB_NEIMB (P57004) Protein tonB| Length = 280 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -1 Query: 515 PAPRPSHVSGKGSAERSEAS-KRSHLAAFGTGGTERQGKGSFANRHSHG 372 PA P + S K +E+ K + GTG E GKGS + HG Sbjct: 141 PAEHPGNASAKADSEQGNGEDKGTGTKGDGTGRGEGSGKGSGGVKGEHG 189
>POGZ_MOUSE (Q8BZH4) Pogo transposable element with ZNF domain| Length = 1409 Score = 29.3 bits (64), Expect = 6.8 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 289 R*ISRDFVI*CSLSRTQITSFTETVRCGPCEWRFANEPL 405 R S F + C L + + T +C CEW F +EPL Sbjct: 534 RQFSTPFQLQCHLENVH-SPYESTTKCKICEWAFESEPL 571
>XYLA_SALTY (Q8ZL90) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 381 LAWATANCFCEGCNLRPGEGAS---DDEIAADLSAVRAIAWRAHHRLG 247 L W TANCF N R G GA+ D E+ + + A A H+LG Sbjct: 137 LLWGTANCF---TNPRYGAGAATNPDPEVFSWAATQVVTAMNATHKLG 181
>XYLA_ECOLI (P00944) Xylose isomerase (EC 5.3.1.5) (D-xylulose keto-isomerase)| Length = 440 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 381 LAWATANCFCEGCNLRPGEGAS---DDEIAADLSAVRAIAWRAHHRLG 247 L W TANCF N R G GA+ D E+ + + A A H+LG Sbjct: 137 LLWGTANCF---TNPRYGAGAATNPDPEVFSWAATQVVTAMEATHKLG 181
>XYLA_ECOL6 (Q8FCE3) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 381 LAWATANCFCEGCNLRPGEGAS---DDEIAADLSAVRAIAWRAHHRLG 247 L W TANCF N R G GA+ D E+ + + A A H+LG Sbjct: 137 LLWGTANCF---TNPRYGAGAATNPDPEVFSWAATQVVTAMEATHKLG 181
>XYLA_ECO57 (Q7A9X4) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 381 LAWATANCFCEGCNLRPGEGAS---DDEIAADLSAVRAIAWRAHHRLG 247 L W TANCF N R G GA+ D E+ + + A A H+LG Sbjct: 137 LLWGTANCF---TNPRYGAGAATNPDPEVFSWAATQVVTAMEATHKLG 181
>SC61B_PONPY (Q5RB31) Protein transport protein Sec61 beta subunit| Length = 95 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = +1 Query: 382 WRFANEPLPCLSVPPVPKAARWLLFEASL 468 WRF E P L V PVP LLF AS+ Sbjct: 55 WRFYTEDSPGLKVGPVPVLVMSLLFIASV 83
>SC61B_HUMAN (P60468) Protein transport protein Sec61 beta subunit| Length = 95 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = +1 Query: 382 WRFANEPLPCLSVPPVPKAARWLLFEASL 468 WRF E P L V PVP LLF AS+ Sbjct: 55 WRFYTEDSPGLKVGPVPVLVMSLLFIASV 83
>SC61B_CANFA (P60467) Protein transport protein Sec61 beta subunit| Length = 95 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = +1 Query: 382 WRFANEPLPCLSVPPVPKAARWLLFEASL 468 WRF E P L V PVP LLF AS+ Sbjct: 55 WRFYTEDSPGLKVGPVPVLVMSLLFIASV 83
>EX5B_CHLMU (Q9PLT8) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1026 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 6 MKAGQVHRQTHTAQSYSHDNS 68 +K+ Q H +T+ AQSYSHD S Sbjct: 321 LKSVQQHLKTYCAQSYSHDES 341 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,877,926 Number of Sequences: 219361 Number of extensions: 1808641 Number of successful extensions: 4989 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4825 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4989 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
