ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467103.1| Oryza sativa (japonica cultivar-group), mRNA 113 6e-22
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
3dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
4dbj|AK069133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 6e-22
5emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 105 1e-19
6emb|CR854945.5| Zebrafish DNA sequence from clone DKEY-155H10 in... 42 1.8
7emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on ch... 42 1.8
8gb|AY018571.1| Oryza sativa microsatellite MRG0896 containing (A... 40 7.0
9gb|AY018428.1| Oryza sativa microsatellite MRG0753 containing (A... 40 7.0
10gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 7.0
11gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 7.0
12gb|AC112261.4| Mus musculus BAC clone RP23-204O17 from 3, comple... 40 7.0
13emb|AL391375.11| Human DNA sequence from clone RP11-375A20 on ch... 40 7.0
14gb|AC098652.2| Homo sapiens chromosome 1 clone RP11-24D16, compl... 40 7.0
15emb|AL844518.5| Zebrafish DNA sequence from clone DKEY-83D9 in l... 40 7.0
16gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 7.0
17gb|AC092813.2| Homo sapiens chromosome 1 clone RP11-550H2, compl... 40 7.0
18gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, compl... 40 7.0
19gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.0
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
21gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, co... 40 7.0
22dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
23emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 i... 40 7.0
24emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in... 40 7.0
25emb|BX950852.8| Zebrafish DNA sequence from clone DKEY-154B17 in... 40 7.0
26emb|BX572633.7| Zebrafish DNA sequence from clone CH211-276P10 i... 40 7.0
27dbj|AP004523.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.0
28gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosom... 40 7.0 
>ref|XM_467103.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2909

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                        
Query: 248  cctaatctgtggtgggctctccaggcaatcgctcgtacagccgataaatcagccgcgatt 307
            |||||||| ||||||  ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct: 2585 cctaatctctggtggaatctccaggcaaccgctcatagagccgatatatcagccgcgatt 2526

                                                                     
Query: 308  tcgtcatctgatgctccctctccaggacgcagattacatccttcacagaaacagttc 364
            | ||||||||| | |||||||| ||||| || ||||||||||||| ||||| |||||
Sbjct: 2525 ttgtcatctgaggttccctctcgaggacacatattacatccttcatagaaatagttc 2469



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 394  aatgaacccttgccttgcctttccgtgcctccagttccaaaggccgcaagatggctcctc 453
            |||| |||| |||||||||| | | |||||||||||||||| || |||  |||| |||||
Sbjct: 2439 aatggacccctgccttgcctgttcatgcctccagttccaaacgctgcagaatgggtcctc 2380

                    
Query: 454  tttgaagc 461
            || |||||
Sbjct: 2379 ttcgaagc 2372
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                            
Query: 248      cctaatctgtggtgggctctccaggcaatcgctcgtacagccgataaatcagccgcgatt 307
                |||||||| ||||||  ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct: 26415318 cctaatctctggtggaatctccaggcaaccgctcatagagccgatatatcagccgcgatt 26415377

                                                                         
Query: 308      tcgtcatctgatgctccctctccaggacgcagattacatccttcacagaaacagttc 364
                | ||||||||| | |||||||| ||||| || ||||||||||||| ||||| |||||
Sbjct: 26415378 ttgtcatctgaggttccctctcgaggacacatattacatccttcatagaaatagttc 26415434
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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_B06
          Length = 131956

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                         
Query: 248   cctaatctgtggtgggctctccaggcaatcgctcgtacagccgataaatcagccgcgatt 307
             |||||||| ||||||  ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct: 15234 cctaatctctggtggaatctccaggcaaccgctcatagagccgatatatcagccgcgatt 15293

                                                                      
Query: 308   tcgtcatctgatgctccctctccaggacgcagattacatccttcacagaaacagttc 364
             | ||||||||| | |||||||| ||||| || ||||||||||||| ||||| |||||
Sbjct: 15294 ttgtcatctgaggttccctctcgaggacacatattacatccttcatagaaatagttc 15350
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>dbj|AK069133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007I15, full
            insert sequence
          Length = 2909

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                        
Query: 248  cctaatctgtggtgggctctccaggcaatcgctcgtacagccgataaatcagccgcgatt 307
            |||||||| ||||||  ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct: 2585 cctaatctctggtggaatctccaggcaaccgctcatagagccgatatatcagccgcgatt 2526

                                                                     
Query: 308  tcgtcatctgatgctccctctccaggacgcagattacatccttcacagaaacagttc 364
            | ||||||||| | |||||||| ||||| || ||||||||||||| ||||| |||||
Sbjct: 2525 ttgtcatctgaggttccctctcgaggacacatattacatccttcatagaaatagttc 2469



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 394  aatgaacccttgccttgcctttccgtgcctccagttccaaaggccgcaagatggctcctc 453
            |||| |||| |||||||||| | | |||||||||||||||| || |||  |||| |||||
Sbjct: 2439 aatggacccctgccttgcctgttcatgcctccagttccaaacgctgcagaatgggtcctc 2380

                    
Query: 454  tttgaagc 461
            || |||||
Sbjct: 2379 ttcgaagc 2372
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score =  105 bits (53), Expect = 1e-19
 Identities = 101/117 (86%)
 Strand = Plus / Plus

                                                                          
Query: 248    cctaatctgtggtgggctctccaggcaatcgctcgtacagccgataaatcagccgcgatt 307
              |||||||| ||||||  ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct: 137351 cctaatctctggtggaatctccaggcaaccgctcatagagccgatatatcagccgcgatt 137410

                                                                       
Query: 308    tcgtcatctgatgctccctctccaggacgcagattacatccttcacagaaacagttc 364
              | ||||||||| | |||||||| || || || ||||||||||||| ||||| |||||
Sbjct: 137411 ttgtcatctgaggttccctctcgagtacacatattacatccttcatagaaatagttc 137467
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>emb|CR854945.5| Zebrafish DNA sequence from clone DKEY-155H10 in linkage group 13,
             complete sequence
          Length = 231490

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   caccatcttatctgttaacag 131
             |||||||||||||||||||||
Sbjct: 43149 caccatcttatctgttaacag 43129
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>emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on chromosome 1 Contains two
              novel genes, complete sequence
          Length = 159399

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    acatgggatggtcttggagct 513
              |||||||||||||||||||||
Sbjct: 144366 acatgggatggtcttggagct 144346
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>gb|AY018571.1| Oryza sativa microsatellite MRG0896 containing (AT)X18, closest to
           marker S13922, genomic sequence
          Length = 236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 tgactatatttttatcctaa 252
           ||||||||||||||||||||
Sbjct: 192 tgactatatttttatcctaa 173
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>gb|AY018428.1| Oryza sativa microsatellite MRG0753 containing (AT)X16, closest to
           marker S13922, genomic sequence
          Length = 232

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 tgactatatttttatcctaa 252
           ||||||||||||||||||||
Sbjct: 188 tgactatatttttatcctaa 169
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tcctctttgaagcctcgctg 468
             ||||||||||||||||||||
Sbjct: 91699 tcctctttgaagcctcgctg 91680
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tcctctttgaagcctcgctg 468
             ||||||||||||||||||||
Sbjct: 78291 tcctctttgaagcctcgctg 78272
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>gb|AC112261.4| Mus musculus BAC clone RP23-204O17 from 3, complete sequence
          Length = 186290

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   ccttgccttgcctttccgtgcctc 424
             ||||||||||||||||| ||||||
Sbjct: 38255 ccttgccttgcctttccttgcctc 38232
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>emb|AL391375.11| Human DNA sequence from clone RP11-375A20 on chromosome X Contains a
             cytochrome b (MTCYB) pseudogene and two CpG islands,
             complete sequence
          Length = 170623

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    cccatgacaactctcccttt 74
             ||||||||||||||||||||
Sbjct: 74423 cccatgacaactctcccttt 74404
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>gb|AC098652.2| Homo sapiens chromosome 1 clone RP11-24D16, complete sequence
          Length = 156393

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 224   ctaaacaaatgactatatttttat 247
             ||||||| ||||||||||||||||
Sbjct: 25848 ctaaacagatgactatatttttat 25871
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>emb|AL844518.5| Zebrafish DNA sequence from clone DKEY-83D9 in linkage group 21 Contains
              novel genes similar to vertebrate AQP3 (aquaporin 3),human
              and mouse VPS29 (vacuolar protein sorting 29 (yeast)), to
              human MGC14560 (x 0004 protein), human and mouse ARPC3
              (actin related protein 2/3 complex, subunit 3, 21kDa),
              human UBE2G1 (ubiquitin-conjugating enzyme E2G 1 (UBC7
              homolog, C. elegans)), vertebrate ATP2A2 (ATPase, Ca++
              transporting, cardiac muscle, slow twitch 2), human BCR
              (breakpoint cluster region) and three CpG islands, complete
              sequence
          Length = 242235

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    caaatgactatatttttatc 248
              ||||||||||||||||||||
Sbjct: 111100 caaatgactatatttttatc 111119
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tcctctttgaagcctcgctg 468
             ||||||||||||||||||||
Sbjct: 80001 tcctctttgaagcctcgctg 79982
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>gb|AC092813.2| Homo sapiens chromosome 1 clone RP11-550H2, complete sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   ttgtatgaccattttggtgg 105
            ||||||||||||||||||||
Sbjct: 3319 ttgtatgaccattttggtgg 3338
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>gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, complete sequence
          Length = 198279

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 224  ctaaacaaatgactatatttttat 247
            ||||||| ||||||||||||||||
Sbjct: 5372 ctaaacagatgactatatttttat 5349
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 469     cgttctgccgatccttttccagat 492
               ||||||||||||||| ||||||||
Sbjct: 1639457 cgttctgccgatcctgttccagat 1639480
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 233      tgactatatttttatcctaa 252
                ||||||||||||||||||||
Sbjct: 11714652 tgactatatttttatcctaa 11714671
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>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence
          Length = 168432

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tcctctttgaagcctcgctg 468
             ||||||||||||||||||||
Sbjct: 10220 tcctctttgaagcctcgctg 10201
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    tgactatatttttatcctaa 252
              ||||||||||||||||||||
Sbjct: 149286 tgactatatttttatcctaa 149305
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>emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 in linkage group 9,
              complete sequence
          Length = 171835

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 401    ccttgccttgcctttccgtgcctc 424
              ||||||||||| ||||||||||||
Sbjct: 157529 ccttgccttgcttttccgtgcctc 157552
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>emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in linkage group 21,
              complete sequence
          Length = 202472

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    caaatgactatatttttatc 248
              ||||||||||||||||||||
Sbjct: 202058 caaatgactatatttttatc 202077
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>emb|BX950852.8| Zebrafish DNA sequence from clone DKEY-154B17 in linkage group 19,
              complete sequence
          Length = 242320

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    aaacaaatgactatatttttatcc 249
              |||||||||||||||||| |||||
Sbjct: 163242 aaacaaatgactatatttatatcc 163219
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>emb|BX572633.7| Zebrafish DNA sequence from clone CH211-276P10 in linkage group 18,
            complete sequence
          Length = 184987

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 401  ccttgccttgcctttccgtg 420
            ||||||||||||||||||||
Sbjct: 2133 ccttgccttgcctttccgtg 2152
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>dbj|AP004523.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03J05, TM0050,
             complete sequence
          Length = 86209

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 304   gatttcgtcatctgatgctccctctccaggac 335
             ||||||| ||||||| | ||||||||||||||
Sbjct: 46085 gatttcgacatctgaggttccctctccaggac 46054
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>gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosome 3, complete sequence
          Length = 222889

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    ccttgccttgcctttccgtgcctc 424
              ||||||||||||||||| ||||||
Sbjct: 208733 ccttgccttgcctttccttgcctc 208710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,475,113
Number of Sequences: 3902068
Number of extensions: 4475113
Number of successful extensions: 78287
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78162
Number of HSP's gapped (non-prelim): 125
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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