>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect(2) = 5e-22
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -2

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



 Score = 35.8 bits (81), Expect(2) = 5e-22
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           GDANQDAMKTGSFYG
Sbjct: 413 GDANQDAMKTGSFYG 427

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 4e-14
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -2

Query: 231 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



 Score = 28.9 bits (63), Expect(2) = 4e-14
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           GDAN DA+K G+FYG
Sbjct: 423 GDANNDAIKRGTFYG 437

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect(2) = 1e-13
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



 Score = 25.8 bits (55), Expect(2) = 1e-13
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           GDAN DA+  G+FYG
Sbjct: 423 GDANADAIGRGTFYG 437

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect(2) = 2e-12
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -2

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 121
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



 Score = 25.4 bits (54), Expect(2) = 2e-12
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           GDAN+DA+  G+F+G
Sbjct: 421 GDANKDAIDRGTFFG 435

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           GDAN DAMKTGSFYG
Sbjct: 413 GDANSDAMKTGSFYG 427

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           GDAN DAM TG+FYG
Sbjct: 423 GDANSDAMNTGTFYG 437

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 320 GDANQDAMKTGSFYG 276
           G AN DAMKTG+FYG
Sbjct: 410 GQANDDAMKTGAFYG 424

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = -3

Query: 320 GDANQDAMKTGSFY 279
           G+AN+DAMKTGSF+
Sbjct: 419 GEANEDAMKTGSFF 432

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 288 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 130
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 132  CRRRSLPLGRSSWHFGRCNLP 194
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134

>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 198  VPEGCTDQNAKNYDPTARSD 139
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402

>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 202 ARAGRLHRPKCQELRPNGKERRR 134
           A+  R  R K Q LRPNG E+RR
Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169

>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 58  WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 219
           ++RCG    +  ++K       K  AVV  C    VL   G+L GA  R+     +C
Sbjct: 57  YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113

>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox|
           protein PBX4)
          Length = 378

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 285 LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 169
           LLRL+N      +S     G+GA  G+   P GC + N+
Sbjct: 88  LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126

>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 84  KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 188
           ++S+ +S      KGS +    PL  + W FG CN
Sbjct: 4   RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,566,182
Number of Sequences: 219361
Number of extensions: 912169
Number of successful extensions: 2472
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2471
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)