ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63h24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANB_METCA (Q605H0) 3-methyl-2-oxobutanoate hydroxymethyltransfe... 29 7.7
2COLL_DROME (P56721) Transcription factor collier (Transcription ... 26 9.5
3KNG2_BOVIN (P01045) Kininogen-2 precursor (Kininogen II) (Thiol ... 29 10.0

>PANB_METCA (Q605H0) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 269

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 198 SITMPEVAGVRVVTVGDGMPHALVGDEVE*KPHTLSCAVYHASTHSAQCV 49
           S  + + AG+ V+ VGD +     G+ ++ +P TLS  + H   H+A CV
Sbjct: 30  SAALQDEAGIEVILVGDSL-----GNVIQGQPTTLSVTLDHMVYHTA-CV 73



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>COLL_DROME (P56721) Transcription factor collier (Transcription factor knot)|
          Length = 575

 Score = 26.2 bits (56), Expect(2) = 9.5
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +1

Query: 133 SVWH-AIADGHHAHTGHLRHSYAY 201
           S WH A    HHA T H  H Y +
Sbjct: 534 STWHQAFVQHHHAATAHPHHHYPH 557



 Score = 21.2 bits (43), Expect(2) = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 236 HNLNHGHQSWH 268
           H+  H HQ WH
Sbjct: 553 HHYPHPHQPWH 563



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>KNG2_BOVIN (P01045) Kininogen-2 precursor (Kininogen II) (Thiol proteinase|
           inhibitor) [Contains: Kininogen-2 heavy chain;
           Bradykinin (Kallidin I); Lysyl-bradykinin (Kallidin II);
           Kininogen-2 light chain]
          Length = 619

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 224 HSQSHNLNHGHQSWHG 271
           H +SH L HGHQ  HG
Sbjct: 453 HHRSHGLGHGHQKQHG 468


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,705,629
Number of Sequences: 219361
Number of extensions: 900819
Number of successful extensions: 1881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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