ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63h22 |
|---|---|
| Clone Library Name | barley_pub |
>PDIA6_PONPY (Q5R6T1) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| Length = 440 Score = 140 bits (354), Expect = 2e-33 Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 2/162 (1%) Frame = -1 Query: 563 ELTSADVMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGA 384 E+ S D+ + C +C VS LP ILD+ A GRN YLE+LL +A+K+KK + ++W A Sbjct: 280 EIISEDIAKRTCEEHQLCVVSVLPHILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEA 339 Query: 383 GKQADLXKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLE 204 G Q++L +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ Sbjct: 340 GAQSELETALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVG 399 Query: 203 GA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 84 G PT+V+ EPWDG+DGE+ ED+ L ++ D DEL Sbjct: 400 GGAFPTIVEREPWDGRDGELPVEDDIDLSDVELDDLG-KDEL 440
>PDIA6_HUMAN (Q15084) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Thioredoxin domain-containing protein 7) Length = 440 Score = 138 bits (348), Expect = 1e-32 Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%) Frame = -1 Query: 563 ELTSADVMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGA 384 E+ + D+ + C +C V+ LP ILD+ A GRN YLE+LL +A+K+KK + ++W A Sbjct: 280 EIINEDIAKRTCEEHQLCVVAVLPHILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEA 339 Query: 383 GKQADLXKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLE 204 G Q++L +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ Sbjct: 340 GAQSELETALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVG 399 Query: 203 GA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 84 G PT+V+ EPWDG+DGE+ ED+ L ++ D DEL Sbjct: 400 GGAFPTIVEREPWDGRDGELPVEDDIDLSDVELDDLG-KDEL 440
>PDIA6_MOUSE (Q922R8) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Thioredoxin domain-containing protein 7) Length = 440 Score = 136 bits (343), Expect = 4e-32 Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Frame = -1 Query: 563 ELTSADVMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGA 384 E+ + D+ ++ C +C V+ LP ILD+ A GRN YLE+LL +A+K+KK + ++W A Sbjct: 280 EIINEDIAKKTCEEHQLCVVAVLPHILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEA 339 Query: 383 GKQADLXKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLE 204 G Q +L +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ Sbjct: 340 GAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVG 399 Query: 203 GA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 84 G PT+ EPWDGKDGE+ ED+ L ++ D DEL Sbjct: 400 GGSFPTITPREPWDGKDGELPVEDDIDLSDVELD-DLEKDEL 440
>PDIA6_RAT (Q63081) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Calcium-binding protein 1) (CaBP1) (Thioredoxin domain-containing protein 7) Length = 440 Score = 134 bits (338), Expect = 1e-31 Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 2/162 (1%) Frame = -1 Query: 563 ELTSADVMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGA 384 E+ + D+ ++ C +C V+ LP ILD+ A GRN YLE+LL +A+K+KK + ++W A Sbjct: 280 EIINEDIAKKTCEEHQLCVVAVLPHILDTGATGRNSYLEVLLKLADKYKKKMWGWLWTEA 339 Query: 383 GKQADLXKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLE 204 G Q +L +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ Sbjct: 340 GAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVG 399 Query: 203 GA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 84 G P + EPWDGKDGE+ ED+ L ++ D DEL Sbjct: 400 GGSFPNITPREPWDGKDGELPVEDDIDLSDVELD-DLEKDEL 440
>PDIA6_MESAU (P38660) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) Length = 439 Score = 127 bits (319), Expect = 2e-29 Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 2/162 (1%) Frame = -1 Query: 563 ELTSADVMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGA 384 E+ + DV ++ C +C V+ LP ILD+ A RN YLE+LL +A+K+KK + ++W A Sbjct: 280 EIINEDVAKKMCEEHQLCVVAVLPHILDTGA-ARNSYLEILLKLADKYKKKMWGWLWTEA 338 Query: 383 GKQADLXKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLE 204 G Q++L +G+GG+GYPAM +N +K +A L+ +F I EF++E G P+ Sbjct: 339 GAQSELENALGIGGFGYPAMARINARKMKFALLKGSFSEQGINEFLRELSFGRASTAPVG 398 Query: 203 GA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 84 G P + EPWDG+DGE+ ED+ L ++ D DEL Sbjct: 399 GGSFPAITAREPWDGRDGELPVEDDIDLSDVELD-DLEKDEL 439
>PDIA6_CAEEL (Q11067) Probable protein disulfide-isomerase A6 precursor (EC| 5.3.4.1) Length = 440 Score = 120 bits (300), Expect = 3e-27 Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Frame = -1 Query: 545 VMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADL 366 V+E+ C +C +FLP ILD ++E RN YL +L +EKFKK+ + ++W Q L Sbjct: 289 VVEDACKEKQLCIFAFLPHILDCQSECRNNYLAMLKEQSEKFKKNLWGWIWVEGAAQPAL 348 Query: 365 XKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEA--GRGGKGNLPLEGAPT 192 + VGG+GYPAM ALN +K YA L+ +F I EF+++ G+G +L +G P Sbjct: 349 EESFEVGGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPK 408 Query: 191 VVQSEPWDGKDGEVIEEDEFSLEELMADSS 102 + ++E WDGKDG + ED+ L ++ D + Sbjct: 409 IQKTEKWDGKDGALPAEDDIDLSDIDLDKT 438
>MUTS_DESVH (P61666) DNA mismatch repair protein mutS| Length = 905 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -1 Query: 344 GYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEA-GRGGKGNLPLEGAPTVVQS 180 G PAM L + P RS F+L TE V A G G+L LEG P +V++ Sbjct: 183 GVDTPAMATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRA 238
>ZAN_PIG (Q28983) Zonadhesin precursor| Length = 2476 Score = 32.7 bits (73), Expect = 0.73 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = -2 Query: 538 KRSVLLLPFAL---CLSSQTSWTQRQKEETSTLSCYYLLLRNLRRVHTVLSGQ 389 +RS LL P CLS +TQR + +TL Y +L ++R+ HT+ SGQ Sbjct: 47 QRSALLSPLIQSSGCLSLSFQYTQRGQASGATLMVYASVLGSIRK-HTLFSGQ 98
>YAI1_ENCCU (Q8SU96) Hypothetical protein ECU10_1810| Length = 621 Score = 32.3 bits (72), Expect = 0.96 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -1 Query: 287 LRSAFELAEITEFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEED---EFSLEEL 117 LR+A EL + E K G+G K +G+ V + KD E +EE E SLEE+ Sbjct: 345 LRNALELLRMEEKEKSKGKGKKKKGGKKGSGEVTAKMEEEKKDSEEVEESAEAEVSLEEM 404
>YRS7_CAEEL (Q10003) Hypothetical protein T05H10.7| Length = 796 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -1 Query: 551 ADVMEEKCASAAICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPY 405 ADVM+ + I F SF PDI A +NKY L L V E + +P+ Sbjct: 580 ADVMKH-AGNRRIMFSSFDPDICSMVATKQNKYPVLFLCVGETQRYTPF 627
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 179 PTGPPSGRPPEEGCPFRRALPPSQ 250 P G P GRPP++G P + PP Q Sbjct: 100 PPGKPEGRPPQQGGPGKPERPPPQ 123
>PDIA4_CAEEL (P34329) Probable protein disulfide-isomerase A4 precursor (EC| 5.3.4.1) (ERp-72 homolog) Length = 618 Score = 30.8 bits (68), Expect = 2.8 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = -1 Query: 470 EGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLXKQVGVGGYGYPAMVAL---NVKKG 300 EG + +L++A+K++K Y F A + A +++G+G G V + + KK Sbjct: 398 EGSEYWRSKVLNIAQKYQKDKYKFAVADEEEFAKELEELGLGDSGLEHNVVVFGYDGKKY 457 Query: 299 AYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGAP 195 P EL E E + GK ++ AP Sbjct: 458 PMNPDEFDGELDENLEAFMKQISSGKAKAHVKSAP 492
>SYC_BACSK (Q5WLT3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/72 (33%), Positives = 35/72 (48%) Frame = -1 Query: 515 ICFVSFLPDILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLXKQVGVGGYG 336 + FVS D+ D N+ E + +VAE+F K+ Y+ A K+ADL +V Sbjct: 61 VTFVSNFTDVDDKIIRAANELGEEVAAVAERFIKAYYADTCALNVKEADLHPRVTETMDD 120 Query: 335 YPAMVALNVKKG 300 A +A KKG Sbjct: 121 IIAFIADLEKKG 132
>PEB1_DROME (Q9U6L5) Ejaculatory bulb-specific protein 1 precursor (Ejaculatory| bulb-specific protein I) (PEB-me) Length = 377 Score = 26.9 bits (58), Expect(2) = 3.8 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 13/57 (22%) Frame = -1 Query: 413 SPYSFVWAGAGKQADLXKQV-------------GVGGYGYPAMVALNVKKGAYAPLR 282 S YS + AG GK +DL + G+ GY YP L G Y P R Sbjct: 89 SGYSKISAGVGKGSDLITIIKNTRSYDPYLIPPGIPGYNYPLGWPLRYPLGPYWPNR 145 Score = 21.9 bits (45), Expect(2) = 3.8 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 Query: 222 GQPSSGGRPDGGP 184 G+PS GG GGP Sbjct: 179 GEPSPGGPSPGGP 191
>GUNC_PSEFL (P27033) Endoglucanase C precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGC) (Cellodextrinase C) Length = 748 Score = 30.0 bits (66), Expect = 4.8 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 11/116 (9%) Frame = +1 Query: 241 SFTNSVISASSKALRSGA-----YAPFFTLR-ATMAGXXXXXXXXCFXRSACLPAPAQTK 402 S ++SV+S+SS ++ SG Y + L +T +G C S C PA Sbjct: 164 SSSSSVVSSSSSSVVSGGGQCNWYGTLYPLCVSTTSGWGYENNRSCISPSTCSAQPAPYG 223 Query: 403 LYG-----LFLNFSATDSSSSRYLFLPSAFESRMSGRKDTKQMAAEAHFSSXTSAL 555 + G ++ S+ SSSS + PS+ S +++ + SS +S++ Sbjct: 224 IVGGSSSPSSISSSSVRSSSSSSVVPPSSSSSSSVPSSSCSSVSSSSVVSSSSSSV 279
>PURT_ECOLI (P33221) Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)| (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) Length = 391 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -1 Query: 350 VGGYGYPAMV--ALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEG 201 V GYP +V ++ +RSA +LA+ ++ ++ GR G G + +EG Sbjct: 144 VADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEG 195
>DEDD2_MOUSE (Q8QZV0) DNA-binding death effector domain-containing protein 2| (FADD-like anti-apoptotic molecule 3) (DED-containing protein FLAME-3) Length = 330 Score = 29.6 bits (65), Expect = 6.2 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -3 Query: 390 RRRQAS*SXEAGRSRWLWLSSHGRSQREERRIRSAP*RLRARRNHRVCEGGRARRK-GQP 214 RRRQAS S ++ +S+W S + QR R S+ R R R + + ++ G+P Sbjct: 133 RRRQASSSSDSPQSQWDTGSPPTKRQRRSRGRPSSGARQRRRAGLAASQQHQQHQELGRP 192 Query: 213 SSGGR 199 SS G+ Sbjct: 193 SSEGK 197
>PUR7_FUSNN (Q8REV1) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 237 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -1 Query: 287 LRSAFELAEIT--EFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDEF 132 L+ F+ IT +F E G+ KG + L T WD K GE +++D F Sbjct: 162 LKEKFDNIGITLVDFKIEFGKNSKGEILLADEITPDTCRLWDKKTGEKLDKDRF 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,570,551 Number of Sequences: 219361 Number of extensions: 1441832 Number of successful extensions: 6008 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5990 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
