Clone Name | rbah63h22 |
---|---|
Clone Library Name | barley_pub |
>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds Length = 1531 Score = 420 bits (212), Expect = e-114 Identities = 420/490 (85%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 ||||||||||||| ||||| | | |||||||| |||||||||| ||||| ||||| | Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 | |||||||| |||||||||||||| ||||||||||| || || ||| ||| || || | Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 256 | || | | |||||||||||| |||||||| || ||||||||||||||||| |||||| Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195 Query: 257 tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 316 |||||||| || ||| |||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135 Query: 317 gagcgaccatggctggatagccatagccaccgactccgacctgcttctncagatcagctt 376 |||| |||||||| |||||||| ||||| || || || ||||| |||| |||| ||||| Sbjct: 1134 gagctaccatggcgggatagccgtagccgcccacaccaacctggttctcgagattagctt 1075 Query: 377 gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 436 ||||||| || ||| |||||||||||||||||||||||| ||||| |||||||| |||| Sbjct: 1074 gcttgccagcagctgtccagacaaaactgtatggactctttttaaacttctcagctacag 1015 Query: 437 atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtctggga 496 | || || ||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct: 1014 agagcaggagctcaaggtacttgtttcttccttctgcctttgaatcaaggatgtctggaa 955 Query: 497 ggaaagacacaaagcaaatggcagcagaagcacacttctcttccatnacatctgcgctag 556 |||| || ||||| ||||||||||||||||| |||||||||||||| ||||| | || || Sbjct: 954 ggaatgatacaaaacaaatggcagcagaagcgcacttctcttccatgacatccgggccag 895 Query: 557 tcaactcaga 566 |||||||||| Sbjct: 894 tcaactcaga 885
>dbj|AK062254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G06, full insert sequence Length = 1642 Score = 412 bits (208), Expect = e-112 Identities = 419/490 (85%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 1429 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1370 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 1369 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1310 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 256 ||| || |||| |||||| || ||||| || ||||||||||| ||| |||||||||| | Sbjct: 1309 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccctcacaaactcag 1250 Query: 257 tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 316 | ||||| | |||| ||| || |||||||| ||||| ||||||||||| |||||||||| Sbjct: 1249 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttga 1190 Query: 317 gagcgaccatggctggatagccatagccaccgactccgacctgcttctncagatcagctt 376 | || ||||| |||||||||||||| ||||| ||||| || ||||||| |||||||||| Sbjct: 1189 gggcaaccatcgctggatagccataaccaccaactccaacttgcttctcaagatcagctt 1130 Query: 377 gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 436 |||| || || ||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1129 gcttcccagcagctgtccagacaaaactgtatggactctttttaaatttctcagcaacag 1070 Query: 437 atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtctggga 496 ||| |||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| | Sbjct: 1069 ataatagcagctcaaggtacttgtttcttccttcggcctttgaatccaagatatctggaa 1010 Query: 497 ggaaagacacaaagcaaatggcagcagaagcacacttctcttccatnacatctgcgctag 556 ||||||| |||||||||||||||||||||||||| ||||||||||| | |||| || || Sbjct: 1009 ggaaagatacaaagcaaatggcagcagaagcacatttctcttccatggcgtctgggccag 950 Query: 557 tcaactcaga 566 |||||||||| Sbjct: 949 tcaactcaga 940
>dbj|AK072941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full insert sequence Length = 1738 Score = 410 bits (207), Expect = e-111 Identities = 401/466 (86%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 1573 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1514 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 1513 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1454 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 256 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct: 1453 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactcag 1394 Query: 257 tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 316 | ||||| | |||| ||| || |||||||| ||||| ||||||||||| ||||||||| Sbjct: 1393 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttgt 1334 Query: 317 gagcgaccatggctggatagccatagccaccgactccgacctgcttctncagatcagctt 376 |||| ||||| |||||||||||||| ||||| ||||| || ||||||| |||||||||| Sbjct: 1333 gagcaaccatcgctggatagccataaccaccaactccaacttgcttctcaagatcagctt 1274 Query: 377 gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 436 |||| || || ||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1273 gcttcccagcagctgtccagacaaaactgtatggactctttttaaatttctcagcaacag 1214 Query: 437 atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtctggga 496 ||| |||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| | Sbjct: 1213 ataatagcagctcaaggtacttgtttcttccttcggcctttgaatccaagatatctggaa 1154 Query: 497 ggaaagacacaaagcaaatggcagcagaagcacacttctcttccat 542 ||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 1153 ggaaagatacaaagcaaatggcagcagaagcacatttctcttccat 1108
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 206 bits (104), Expect = 6e-50 Identities = 131/140 (93%) Strand = Plus / Minus Query: 403 ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 462 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 16880229 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 16880170 Query: 463 cttccttctgcctttgagtccaggatgtctgggaggaaagacacaaagcaaatggcagca 522 |||||||| |||||||| |||| ||| ||||| |||||||| |||||||||||||||||| Sbjct: 16880169 cttccttcggcctttgaatccaagatatctggaaggaaagatacaaagcaaatggcagca 16880110 Query: 523 gaagcacacttctcttccat 542 |||||||| ||||||||||| Sbjct: 16880109 gaagcacatttctcttccat 16880090 Score = 125 bits (63), Expect = 2e-25 Identities = 110/126 (87%) Strand = Plus / Minus Query: 280 ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 339 |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 16880755 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 16880696 Query: 340 tagccaccgactccgacctgcttctncagatcagcttgcttgccggcgcctgcccagaca 399 || ||||| ||||| || ||||||| |||||||||||||| || || ||| ||||||| Sbjct: 16880695 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 16880636 Query: 400 aaactg 405 |||||| Sbjct: 16880635 aaactg 16880630 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 16881040 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 16880981 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 16880980 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 16880921 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 254 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| Sbjct: 16880920 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 16880863
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 206 bits (104), Expect = 6e-50 Identities = 131/140 (93%) Strand = Plus / Minus Query: 403 ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 462 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 10042 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 9983 Query: 463 cttccttctgcctttgagtccaggatgtctgggaggaaagacacaaagcaaatggcagca 522 |||||||| |||||||| |||| ||| ||||| |||||||| |||||||||||||||||| Sbjct: 9982 cttccttcggcctttgaatccaagatatctggaaggaaagatacaaagcaaatggcagca 9923 Query: 523 gaagcacacttctcttccat 542 |||||||| ||||||||||| Sbjct: 9922 gaagcacatttctcttccat 9903 Score = 125 bits (63), Expect = 2e-25 Identities = 110/126 (87%) Strand = Plus / Minus Query: 280 ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 339 |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 10568 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 10509 Query: 340 tagccaccgactccgacctgcttctncagatcagcttgcttgccggcgcctgcccagaca 399 || ||||| ||||| || ||||||| |||||||||||||| || || ||| ||||||| Sbjct: 10508 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 10449 Query: 400 aaactg 405 |||||| Sbjct: 10448 aaactg 10443 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 10853 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 10794 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 10793 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 10734 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 254 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| Sbjct: 10733 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 10676
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1163_C07 Length = 107121 Score = 206 bits (104), Expect = 6e-50 Identities = 131/140 (93%) Strand = Plus / Minus Query: 403 ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 462 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 77920 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 77861 Query: 463 cttccttctgcctttgagtccaggatgtctgggaggaaagacacaaagcaaatggcagca 522 |||||||| |||||||| |||| ||| ||||| |||||||| |||||||||||||||||| Sbjct: 77860 cttccttcggcctttgaatccaagatatctggaaggaaagatacaaagcaaatggcagca 77801 Query: 523 gaagcacacttctcttccat 542 |||||||| ||||||||||| Sbjct: 77800 gaagcacatttctcttccat 77781 Score = 125 bits (63), Expect = 2e-25 Identities = 110/126 (87%) Strand = Plus / Minus Query: 280 ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 339 |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 78446 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 78387 Query: 340 tagccaccgactccgacctgcttctncagatcagcttgcttgccggcgcctgcccagaca 399 || ||||| ||||| || ||||||| |||||||||||||| || || ||| ||||||| Sbjct: 78386 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 78327 Query: 400 aaactg 405 |||||| Sbjct: 78326 aaactg 78321 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 78731 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 78672 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 78671 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 78612 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 254 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| Sbjct: 78611 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 78554
>gb|AY112452.1| Zea mays CL286_2 mRNA sequence Length = 1510 Score = 206 bits (104), Expect = 6e-50 Identities = 227/268 (84%) Strand = Plus / Minus Query: 77 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 136 ||||||||||||| ||||| | | |||||||| |||||||||| ||||| ||||| | Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315 Query: 137 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 196 | |||||||| |||||||||||||| ||||||||||| || || ||| ||| || || | Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255 Query: 197 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 256 | || | | |||||||||||| |||||||| || ||||||||||||||||| |||||| Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195 Query: 257 tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 316 |||||||| || ||| |||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135 Query: 317 gagcgaccatggctggatagccatagcc 344 |||| |||||||| |||||||| ||||| Sbjct: 1134 gagctaccatggcgggatagccgtagcc 1107 Score = 95.6 bits (48), Expect = 2e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 484 aggatgtctgggaggaaagacacaaagcaaatggcagcagaagcacacttctcttccatn 543 ||||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||| Sbjct: 967 aggatgtctggaaggaatgatacaaaacaaatggcagcagaagcgcacttctcttccatg 908 Query: 544 acatctgcgctagtcaactcaga 566 ||||| | || |||||||||||| Sbjct: 907 acatccgggccagtcaactcaga 885 Score = 54.0 bits (27), Expect = 5e-04 Identities = 52/62 (83%) Strand = Plus / Minus Query: 393 ccagacaaaactgtatggactcttcttaaatttctcagcaacagatagtagcagctcaag 452 |||||||||||||||||||||| ||| |||||||| ||||| || || |||||||| Sbjct: 1058 ccagacaaaactgtatggactcnnnnnaaacttctcagctacagagagcaggagctcaag 999 Query: 453 gt 454 || Sbjct: 998 gt 997
>emb|AJ719135.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT2-31-530, cultivar Bright Yellow 2 Length = 501 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/69 (85%) Strand = Plus / Minus Query: 496 aggaaagacacaaagcaaatggcagcagaagcacacttctcttccatnacatctgcgcta 555 ||||| || |||||||| || ||||||||| ||| |||| |||||| ||||||| |||| Sbjct: 329 aggaatgaaacaaagcagatngcagcagaattacatttctnttccatgacatctgggcta 270 Query: 556 gtcaactca 564 ||||||||| Sbjct: 269 gtcaactca 261
>emb|AL590093.10| Human DNA sequence from clone RP11-240D10 on chromosome 1 Contains the 3' end of the THEA gene for thioesterase (adipose associated), a novel gene (MGC27169), a novel gene and the 5' end of a novel gene (FLJ46354), complete sequence Length = 62485 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 483 caggatgtctgggaggaaaga 503 ||||||||||||||||||||| Sbjct: 31700 caggatgtctgggaggaaaga 31720
>gb|M99566.1|SYNSCOS sCos cloning vector SfiI containing bacteriophage promoters and flanking restriction sites in sCos vectors Length = 7937 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 1567 cacaaagcaaatggcagcaga 1547 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 486 cacaaagcaaatggcagcaga 466
>gb|M99569.1|SYNPWE15 sCos cloning vector SfiI containing bacteriophage promoters and flanking restriction sites in sCos vectors Length = 8164 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 1036 cacaaagcaaatggcagcaga 1016
>gb|AC025962.5|AC025962 Homo sapiens chromosome 8, clone RP11-790J24, complete sequence Length = 167872 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 517 gcagcagaagcacacttctct 537 ||||||||||||||||||||| Sbjct: 21268 gcagcagaagcacacttctct 21248
>gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1, complete sequence Length = 122146 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 caggatgtctgggaggaaaga 503 ||||||||||||||||||||| Sbjct: 62028 caggatgtctgggaggaaaga 62008
>gb|U00003.1|PIB8 pIB8 cosmid vector; complete sequence Length = 5406 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 4433 cacaaagcaaatggcagcaga 4453
>gb|AY532632.1| Cloning vector pLAFR, complete sequence Length = 20352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 18606 cacaaagcaaatggcagcaga 18626
>gb|AE004686.1| Pseudomonas aeruginosa PAO1, section 247 of 529 of the complete genome Length = 10905 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 tcctcgatgacctctccatcc 162 ||||||||||||||||||||| Sbjct: 9036 tcctcgatgacctctccatcc 9016
>gb|AF184978.1|AF184978 Binary vector pCLD04541, complete sequence Length = 27608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 4587 cacaaagcaaatggcagcaga 4607
>emb|Z96759.1|HS8QT041 H.sapiens telomeric DNA sequence, clone 8QTEL041, read 8QTELOO041.seq Length = 342 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 79 cacaaagcaaatggcagcaga 99
>gb|L19900.1|SYNSVPHEP Cloning vector cosmid svPHEP DNA sequence encoding beta-lactamase and HSV thymidine kinase genes Length = 9201 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 7111 cacaaagcaaatggcagcaga 7131
>gb|L19899.1|SYNCVPTCF Cloning vector cosmid pTCF DNA sequence encoding beta-lactamase gene Length = 7941 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 6508 cacaaagcaaatggcagcaga 6488
>gb|AF136442.1|AF136442 Cloning vector pScosBC1, E. coli-Burkholderia shuttle cosmid vector, complete sequence Length = 8772 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 1567 cacaaagcaaatggcagcaga 1547 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 486 cacaaagcaaatggcagcaga 466
>gb|AF129504.1|AF129504 Cloning vector pWDYcos1.0.1, complete sequence Length = 7478 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 5387 cacaaagcaaatggcagcaga 5367 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 4305 cacaaagcaaatggcagcaga 4285
>dbj|AB055064.1| Synthetic transposable element dAc-I-RS DNA, complete sequence Length = 7635 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 5342 cacaaagcaaatggcagcaga 5322
>emb|Z12112.1|PWE15A pWE15A cosmid vector DNA Length = 8213 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 7175 cacaaagcaaatggcagcaga 7195
>emb|X94336.1|CVBETLACT Cloning vector beta-lactamase gene Length = 11142 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 678 cacaaagcaaatggcagcaga 698
>emb|X98612.1|CVPJB8 Artificial cloning vector pjb8 Length = 5410 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 978 cacaaagcaaatggcagcaga 958
>emb|X65279.1|PWE15 pWE15 cosmid vector DNA Length = 8136 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 7135 cacaaagcaaatggcagcaga 7155
>gb|AF075573.1|AF075573 Cloning vector pWEB, complete sequence Length = 8179 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 1053 cacaaagcaaatggcagcaga 1033
>emb|CT485796.1| Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE Length = 129047 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 493 gggaggaaagacacaaagcaa 513 ||||||||||||||||||||| Sbjct: 105013 gggaggaaagacacaaagcaa 104993
>gb|L76273.1|SYNHPH Cloning vector pMLF2 hygromycin B phosphotransferase (HPH) gene, complete cds Length = 9184 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 4763 cacaaagcaaatggcagcaga 4743
>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence Length = 217373 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 ttgtttcttccttctgccttt 477 ||||||||||||||||||||| Sbjct: 142631 ttgtttcttccttctgccttt 142611
>gb|U07340.1|U07340 Cosmid vector pTL5, complete sequence Length = 5793 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcaga 524 ||||||||||||||||||||| Sbjct: 3261 cacaaagcaaatggcagcaga 3281
>dbj|AP003697.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1261H7, complete sequence Length = 170468 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gcagcagaagcacacttctct 537 ||||||||||||||||||||| Sbjct: 149915 gcagcagaagcacacttctct 149935
>ref|XM_483499.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1345 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tgacctctccatccttgccg 168 |||||||||||||||||||| Sbjct: 1050 tgacctctccatccttgccg 1031
>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 215 ggttgccctttccgccgcgccctgcctccttc 246 ||||||||||||| || | ||||||||||||| Sbjct: 75976 ggttgccctttccccctctccctgcctccttc 76007
>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence Length = 191054 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 atggctggatagccatagcc 344 |||||||||||||||||||| Sbjct: 58625 atggctggatagccatagcc 58644
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 cttgtttcttccttctgcctttga 479 |||||||||| ||||||||||||| Sbjct: 1938790 cttgtttcttacttctgcctttga 1938813
>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence Length = 199464 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 agcaacagatagtagcagct 448 |||||||||||||||||||| Sbjct: 191521 agcaacagatagtagcagct 191502
>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tcctcgatgacctctccatc 161 |||||||||||||||||||| Sbjct: 1370 tcctcgatgacctctccatc 1351
>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tcctcgatgacctctccatc 161 |||||||||||||||||||| Sbjct: 1370 tcctcgatgacctctccatc 1351
>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence Length = 171061 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gagaactcgtcctcctcgat 149 |||||||||||||||||||| Sbjct: 170896 gagaactcgtcctcctcgat 170915
>gb|AC147348.2| Xenopus tropicalis clone CH216-122H9, complete sequence Length = 161088 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tggcagcagaagcacacttc 534 |||||||||||||||||||| Sbjct: 38892 tggcagcagaagcacacttc 38873
>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes Length = 5940 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ctcgtcctcctcgatgacct 154 |||||||||||||||||||| Sbjct: 5665 ctcgtcctcctcgatgacct 5646
>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence Length = 219899 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gagaactcgtcctcctcgat 149 |||||||||||||||||||| Sbjct: 33851 gagaactcgtcctcctcgat 33870
>emb|AL035608.11|HS479J7 Human DNA sequence from clone RP3-479J7 on chromosome Xq21.33-23 Contains the gene for tenomodulin protein (TNMD), the TM4SF6 gene for transmembrane 4 superfamily member 6, the 5' end of the gene for sushi-repeat protein (SRPUL) and two CpG islands, complete sequence Length = 97189 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cttgtttcttccttctgcct 475 |||||||||||||||||||| Sbjct: 23481 cttgtttcttccttctgcct 23462
>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains a novel gene similar to PPP1R14B (protein phosphatase 1, regulatory (inhibitor) subunit 14B), a novel gene similar to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1), the pc gene for pyruvate carboxylase and three putative novel retrotransposons, complete sequence Length = 192531 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tgcctccttcacaaactcgg 256 |||||||||||||||||||| Sbjct: 144220 tgcctccttcacaaactcgg 144201
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 cacaaagcaaatggcagcag 523 |||||||||||||||||||| Sbjct: 2159956 cacaaagcaaatggcagcag 2159975
>gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, complete sequence Length = 173917 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 tttcttccttctgcctttga 479 |||||||||||||||||||| Sbjct: 54830 tttcttccttctgcctttga 54849
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgacctctccatccttgccg 168 |||||||||||||||||||| Sbjct: 26540041 tgacctctccatccttgccg 26540060
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgacctctccatccttgccg 168 |||||||||||||||||||| Sbjct: 88908 tgacctctccatccttgccg 88927
>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20, complete sequence Length = 107263 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tgcctccttcacaaactcgg 256 |||||||||||||||||||| Sbjct: 31198 tgcctccttcacaaactcgg 31217
>dbj|AK119370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H09, full insert sequence Length = 2945 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgacctctccatccttgccg 168 |||||||||||||||||||| Sbjct: 1139 tgacctctccatccttgccg 1158
>dbj|AK073978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full insert sequence Length = 1345 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tgacctctccatccttgccg 168 |||||||||||||||||||| Sbjct: 1050 tgacctctccatccttgccg 1031
>tpe|BN000648.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx119 gene for class III peroxidase 119 precursor, exons 1-3 Length = 2477 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tgacctctccatccttgccg 168 |||||||||||||||||||| Sbjct: 2448 tgacctctccatccttgccg 2429
>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence Length = 200503 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 atggctggatagccatagcc 344 |||||||||||||||||||| Sbjct: 182782 atggctggatagccatagcc 182801
>dbj|AP001574.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1991G8 Length = 148582 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 gaggaaagacacaaagcaaa 514 |||||||||||||||||||| Sbjct: 44446 gaggaaagacacaaagcaaa 44427
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ggaccaccgtcggggcgccc 204 |||||||||||||||||||| Sbjct: 157627 ggaccaccgtcggggcgccc 157646
>gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complete sequence Length = 218283 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 agcaacagatagtagcagct 448 |||||||||||||||||||| Sbjct: 26327 agcaacagatagtagcagct 26308
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete sequence Length = 217775 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 aaaactgtatggactcttct 418 |||||||||||||||||||| Sbjct: 147074 aaaactgtatggactcttct 147055 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,453,585 Number of Sequences: 3902068 Number of extensions: 4453585 Number of successful extensions: 86240 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86040 Number of HSP's gapped (non-prelim): 192 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)