ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ862532.1| Hordeum vulgare subsp. vulgare transposon Islay,... 52 0.002
2emb|AJ862531.1| Hordeum vulgare subsp. vulgare transposon Islay,... 52 0.002
3emb|AJ862533.1| Hordeum vulgare subsp. vulgare transposon Islay,... 48 0.025
4emb|AJ862540.1| Hordeum vulgare subsp. vulgare transposon Islay,... 44 0.39
5emb|AJ862539.1| Hordeum vulgare subsp. vulgare transposon Islay,... 44 0.39
6emb|AJ862537.1| Hordeum vulgare subsp. vulgare transposon Islay,... 44 0.39
7emb|AJ862536.1| Hordeum vulgare subsp. vulgare transposon Islay,... 44 0.39
8emb|AJ862535.1| Hordeum vulgare subsp. vulgare transposon Islay,... 44 0.39
9emb|AJ862534.1| Hordeum vulgare subsp. spontaneum transposon Isl... 44 0.39
10emb|AJ862529.1| Hordeum vulgare subsp. vulgare transposon Islay,... 44 0.39
11ref|XM_455184.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F02299g ... 42 1.5
12emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 1.5
13emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 42 1.5
14emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 42 1.5
15gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 42 1.5
16gb|AC116111.17| Mus musculus chromosome 10, clone RP23-23B18, co... 40 6.1
17gb|AC107864.10| Mus musculus chromosome 10, clone RP23-388A14, c... 40 6.1 
>emb|AJ862532.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7G5
          Length = 254

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagtn-cctgacttattgaaaccaa 51
          |||||||||  ||||||||||||  |||||||||||||||||||
Sbjct: 52 cttataagtcactggttttaagtcacctgacttattgaaaccaa 9
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>emb|AJ862531.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7D5
          Length = 253

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagtn-cctgacttattgaaaccaa 51
          |||||||||  ||||||||||||  |||||||||||||||||||
Sbjct: 52 cttataagtcactggttttaagtcacctgacttattgaaaccaa 9
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>emb|AJ862533.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7C3
          Length = 254

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 40/45 (88%), Gaps = 2/45 (4%)
 Strand = Plus / Minus

                                                       
Query: 9  cttataagttnctggttttaagtn--cctgacttattgaaaccaa 51
          |||||||||  ||||||||||||   |||||||||||||||||||
Sbjct: 53 cttataagtcactggttttaagtcatcctgacttattgaaaccaa 9
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>emb|AJ862540.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7E6
          Length = 253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagtn-cctgacttattgaaaccaa 51
          |||||||||  |||||||||||   |||||||||||||||||||
Sbjct: 52 cttataagtcactggttttaagccacctgacttattgaaaccaa 9
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>emb|AJ862539.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7G6
          Length = 253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagtn-cctgacttattgaaaccaa 51
          |||||||||  |||||||||||   |||||||||||||||||||
Sbjct: 52 cttataagtcactggttttaagccacctgacttattgaaaccaa 9
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>emb|AJ862537.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7E7
          Length = 253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagtn-cctgacttattgaaaccaa 51
          |||||||||  |||||||||||   |||||||||||||||||||
Sbjct: 52 cttataagtcactggttttaagccacctgacttattgaaaccaa 9
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>emb|AJ862536.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7H6
          Length = 253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagt-ncctgacttattgaaaccaa 51
          |||||||||  ||||||||||||  ||| |||||||||||||||
Sbjct: 52 cttataagtcactggttttaagtcacctcacttattgaaaccaa 9
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>emb|AJ862535.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7D3
          Length = 253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagt-ncctgacttattgaaaccaa 51
          |||||||||  ||||||||||||  ||| |||||||||||||||
Sbjct: 52 cttataagtcactggttttaagtcacctcacttattgaaaccaa 9
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>emb|AJ862534.1| Hordeum vulgare subsp. spontaneum transposon Islay, clone
          SQ001T7G7
          Length = 253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagt-ncctgacttattgaaaccaa 51
          |||||||||  ||||||||||||  ||| |||||||||||||||
Sbjct: 52 cttataagtcactggttttaagtcacctcacttattgaaaccaa 9
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>emb|AJ862529.1| Hordeum vulgare subsp. vulgare transposon Islay, clone SQ001T7E5
          Length = 263

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                      
Query: 9  cttataagttnctggttttaagt-ncctgacttattgaaaccaa 51
          |||||||||  ||||||||||||  |||||||||||| ||||||
Sbjct: 52 cttataagtcactggttttaagtcacctgacttattggaaccaa 9
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>ref|XM_455184.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F02299g predicted mRNA
          Length = 2619

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 398  gaatcgcttgcattttttgacaataatat 426
            |||| |||||||||||||||| |||||||
Sbjct: 1590 gaattgcttgcattttttgactataatat 1618
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2602197

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 398    gaatcgcttgcattttttgacaataatat 426
              |||| |||||||||||||||| |||||||
Sbjct: 207138 gaattgcttgcattttttgactataatat 207166
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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete
              sequence
          Length = 216800

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 159    tggacctcaaacaggcctcctattt 183
              ||||||||||||| |||||||||||
Sbjct: 125092 tggacctcaaacacgcctcctattt 125068
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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 159    tggacctcaaacaggcctcctattt 183
              ||||||||||||| |||||||||||
Sbjct: 120828 tggacctcaaacacgcctcctattt 120852
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>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 259    agctgctaagaaaactaaaggaggc 283
              ||||||| |||||||||||||||||
Sbjct: 201211 agctgctgagaaaactaaaggaggc 201235
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>gb|AC116111.17| Mus musculus chromosome 10, clone RP23-23B18, complete sequence
          Length = 211888

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 341   taattgttctagatgtcctttatt 364
             |||||||||||||| |||||||||
Sbjct: 12839 taattgttctagatttcctttatt 12816
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>gb|AC107864.10| Mus musculus chromosome 10, clone RP23-388A14, complete sequence
          Length = 207955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 341    taattgttctagatgtcctttatt 364
              |||||||||||||| |||||||||
Sbjct: 114780 taattgttctagatttcctttatt 114757


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,859,229
Number of Sequences: 3902068
Number of extensions: 3859229
Number of successful extensions: 64422
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 64394
Number of HSP's gapped (non-prelim): 28
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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