ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 195 3e-69
2RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 154 2e-51
3RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 155 2e-51
4RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 156 6e-51
5RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 171 1e-42
6RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 170 2e-42
7RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 164 1e-40
8RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 162 6e-40
9RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 158 1e-38
10RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 157 3e-38
11RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 157 3e-38
12RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 156 3e-38
13RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 150 2e-36
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 149 4e-36
15RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 115 1e-25
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 94 3e-19
17RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a... 75 1e-13
18RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a... 69 1e-11
19EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-... 32 1.6
20RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a... 31 2.8
21EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha) 30 4.7
22GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre... 30 4.7
23LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 p... 30 6.1
24EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF... 29 8.0

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  195 bits (496), Expect(2) = 3e-69
 Identities = 96/96 (100%), Positives = 96/96 (100%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV
Sbjct: 332 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 391

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
           QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG
Sbjct: 392 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427



 Score = 86.3 bits (212), Expect(2) = 3e-69
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -3

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



to top

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  154 bits (390), Expect(2) = 2e-51
 Identities = 75/96 (78%), Positives = 86/96 (89%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EKL+EYG+MLV
Sbjct: 342 IDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLV 401

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
            EQ+NVKRVQLA+TY+SQAALGDAN DA+  G+FYG
Sbjct: 402 MEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437



 Score = 67.8 bits (164), Expect(2) = 2e-51
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



to top

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  155 bits (392), Expect(2) = 2e-51
 Identities = 73/96 (76%), Positives = 85/96 (88%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVY DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++KLL YG MLV
Sbjct: 342 IDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLV 401

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
           QEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG
Sbjct: 402 QEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437



 Score = 66.6 bits (161), Expect(2) = 2e-51
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -3

Query: 231 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



to top

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  156 bits (395), Expect(2) = 6e-51
 Identities = 72/96 (75%), Positives = 87/96 (90%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++KL+EYG+MLV
Sbjct: 340 IDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLV 399

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
           QEQ+NVKRVQLAD YMS AALGDAN+DA+  G+F+G
Sbjct: 400 QEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435



 Score = 63.9 bits (154), Expect(2) = 6e-51
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -3

Query: 228 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 121
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



to top

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  171 bits (433), Expect = 1e-42
 Identities = 80/96 (83%), Positives = 89/96 (92%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLV
Sbjct: 329 IDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLV 388

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
           QEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG
Sbjct: 389 QEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424



to top

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  170 bits (431), Expect = 2e-42
 Identities = 80/96 (83%), Positives = 90/96 (93%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EKL+EYG+MLV
Sbjct: 332 IDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLV 391

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
           +EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG
Sbjct: 392 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427



to top

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  164 bits (416), Expect = 1e-40
 Identities = 76/96 (79%), Positives = 89/96 (92%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLV
Sbjct: 342 IDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLV 401

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 276
           QEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG
Sbjct: 402 QEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437



to top

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  162 bits (410), Expect = 6e-40
 Identities = 74/95 (77%), Positives = 89/95 (93%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EKLLEYGHMLV
Sbjct: 338 IDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLV 397

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 279
            EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+
Sbjct: 398 AEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432



to top

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  158 bits (399), Expect = 1e-38
 Identities = 73/94 (77%), Positives = 87/94 (92%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV
Sbjct: 342 IDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLV 401

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 282
           +EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F
Sbjct: 402 EEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435



to top

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  157 bits (396), Expect = 3e-38
 Identities = 76/94 (80%), Positives = 85/94 (90%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEKLLEYG+MLV
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLV 405

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 282
           QEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F
Sbjct: 406 QEQENVKRVQLAETYLKEAALGDANADAINTGNF 439



to top

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  157 bits (396), Expect = 3e-38
 Identities = 75/95 (78%), Positives = 84/95 (88%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EKLLEYG+MLV
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLV 405

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 279
           QEQ+NVKRVQLAD Y+ +AALGDAN DA+  GSF+
Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440



to top

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  156 bits (395), Expect = 3e-38
 Identities = 75/92 (81%), Positives = 85/92 (92%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLV
Sbjct: 341 IDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLV 400

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTG 288
           QEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG
Sbjct: 401 QEQENVKRVQLAETYLKEAALGDANADAINTG 432



to top

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  150 bits (379), Expect = 2e-36
 Identities = 67/95 (70%), Positives = 88/95 (92%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++KLL+YG+MLV
Sbjct: 344 IDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLV 403

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 279
           QEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 404 QEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438



to top

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  149 bits (377), Expect = 4e-36
 Identities = 67/95 (70%), Positives = 87/95 (91%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++KLL Y  MLV
Sbjct: 346 IDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLV 405

Query: 383 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 279
           QEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 406 QEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440



to top

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  115 bits (287), Expect = 1e-25
 Identities = 53/71 (74%), Positives = 62/71 (87%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV
Sbjct: 339 IDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLV 398

Query: 383 QEQDNVKRVQL 351
            EQ+NVKRV+L
Sbjct: 399 MEQENVKRVKL 409



to top

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 47/81 (58%), Positives = 60/81 (74%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFFGALRARVYDD VR+W+  TG++ IG++LVN+R   V   +  M +  L++YG  LV
Sbjct: 315 IDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLV 373

Query: 383 QEQDNVKRVQLADTYMSQAAL 321
            EQ+NVKRVQLAD Y+S A L
Sbjct: 374 DEQENVKRVQLADAYLSGAEL 394



to top

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 32/75 (42%), Positives = 50/75 (66%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFF ALR+R+YD+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E  + +V
Sbjct: 215 IDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMV 274

Query: 383 QEQDNVKRVQLADTY 339
            EQ  ++  QL D Y
Sbjct: 275 AEQKRIETSQLVDEY 289



to top

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 31/75 (41%), Positives = 48/75 (64%)
 Frame = -1

Query: 563 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 384
           IDFF ALR+R+YD ++R ++   G E I  R+VNS + P  F++P  ++  L+E G++++
Sbjct: 215 IDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVL 274

Query: 383 QEQDNVKRVQLADTY 339
            EQ  V   QL D Y
Sbjct: 275 GEQQRVDNSQLVDEY 289



to top

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = -1

Query: 446 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 291
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 290 GSFYG*KILHTHPPSLAA 237
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355



to top

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 458 RDGPVTFEQPKMTVEK 411
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32



to top

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -1

Query: 446 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 291
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 290 GSFYG*KILHTHPPSLAA 237
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355



to top

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 343 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 447
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453



to top

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 509 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 402
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257



to top

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -1

Query: 446 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 291
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 290 GSFYG*KILHTHPPSLAA 237
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,980,116
Number of Sequences: 219361
Number of extensions: 1582004
Number of successful extensions: 4799
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4797
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top